ptch2 (ptch2)


Basic Information

Item Value
gene id ptch2
gene name ptch2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 24808244 ~ 24837694 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816633.1
ATGGCCTCGGATCGCGGGGTCCCAGGGGCCGGCGTCTATGGAGATTTACCCCCGAGTTATACGCGCTCCCAGCAGCCTGCGAATCCAGACGTACTCCGGAGACCCAGCTACTGCCACGCTGCTTTCGCACTTAAACAGATCTCAAAGGGGAAGGCTGTAGGTCAGAAAGCTCCTCTGTGGATCCGGGCGAGGTTCCAGGCCCTCCTGTTCTCTCTGGGCTGCCACATCCAGAAGCACTGTGGGAAGGTCCTCTTTATTGGACTCTTAGTATTCGGGGCTCTGTCTGTGGGACTCCGAGTCGCAGCCATCGAAACGGACATCGAACAGCTATGGGTGGAAGCTGGTAGTCGAGTGAGCACAGAGCTTCGCTACACCAAGGAGAAGCAGGGAGACGAGTCAGTATTTACCTCACAGATGCTTATCCAGACCCCCAAAGAAGAGGGCACCAATATTCTTACCCAGGAGGCTTTGCTGGTTCACATGGAAGCCGCCCTGTCCGCCAGCAAGGTCCAGGTGTCACTGTTTGGAAAGTCGTGGGATCTTAACAAAATATGCTATAAATCAGGAGTTCCTATTATAGAAAATGTCATGATTGAAAGGATGATTGACAAGCTATTCCCCTGTATGATAATCACCCCATTGGACTGTTTTTGGGAAGGGGCCAAACTACAGGGAGGCTCCGCCTATTTACCGGGTATGCCAGATATCCAGTGGATGAATCTAGATCCAGTCAAGCTGATGGAGGAGCTGAGTCAGTTCACCTCCCTGGAAGGATTTAAGGAGATGTTGGACAAAGCCCAGGTGGGACATGCCTACATGAACAGGCCATGTCTAGATCCCTCAGACCCTGACTGCCCTCTCAGTGCACCCAACAAGGAGCAAGGAGAGAGTCCTGACATTGCTGGGCGTCTTCAGGGTGGTTGCCATGGTTTCAGTCAGAAGTTCATGCACTGGCAGGAGGAGCTGATCCTGGGAGGGCGGGTGAAGAGCAGCCAGGATATTCTGCTGAGtgCGGAGGCTCTCCAAACCATGTTCCTGTTGATGAGTCCTAAGCAGCTGTACGAGCACTTTAAAGATGACTACGAGATCCACGACATAAACTGGAATGTAGAAAAGGCTACCGCCATCCTCGAGTCCTGGCAGAGGAAGTTTGTGGAGGTGGTCCACCAGAGTATCCCATCTAACTCCAGCCAGTCCCTCCACGCTTTCTCCACCACCACCCTTAACGACATCATGAAATCTTTCTCTGATGTCAGCGTCATCAGGGTGGCTGGAGGATACCTGCTTATGCTGGCCTATGCCTGTGTGACCATGCTAAGGTGGGACTGTGCCAAGTCCCAGGGGGCCGTGGGGCTGGCCGGGGTGCTGTTAGTGGCTCTGTCAGTGGCTGCAGGACTGGGTCTCTGCTCCCTGCTTGGCCTCTCTTTCAATGCTGCCACCACACAGGTGCTTCCCTTCTTGGCACTAGGGATTGGCGTGGATGACATGTTTCTGTTGGCTCATTCCTTCACAGAGGCTGGAAGTAACATCCCCTTTAAGgacCGGACAGGAGACTGTTTGCGTCGCACCGGCACCAGTGTGGCTCTAACTTCCATCAACAATATGATTGCATTCTTTATGGCTGCTCTCGTACCCATTCCTGCCTTGCGAGCTTTCTCTTTGCAGGCGGCCATTGTGGTCGTGTTTAACTTCGCCATGGTGCTGCTCATCTTCCCTGCCATCCTCAGTTTGGACCTCCACAGGCGTGAGGATAAGCGTTTGGATGTCCTCTGCTGCCTGTACAGCCCCTGCTCCGACCGCGTCATCCACCTCTCTCCGCACGAGCTGTCAGACGCTGGGGAGCAGCCGCACACGCCTACGACGgcaacaacacacacgcaccagTACTCGGCGGGATCGACAATCACCACCAGCACCCAAATCACCACCACAGTGCAGGCATTCACGCAGTGTGACGCAGCCGGCCAGCATATCGTCACAATCCTACCACCTACCTCACAGATCTCCACCAGCCCGCCATCCATCATCCTCTGCCCCACTTCACAGTCACAAGCCATCACACCttcccccaccaccacctctgTGCAGGACCCCTACGGCTCCCAGCTCTTCACCCCTACGTCCAGCTCCACACGGGACCTCCTAGCTCAGGTGGAGGATTCCAAATCGGGAAAGAAGTGCGTCCCACTCCCTTTCCTGCACTGGAACCTGTCCAGCTTCGCCAGGGAGAAATACGCCCCTCTGCTCCTCAAACCCAAAAGCAAAGCCATCGTGGTGGTTCTCTTTCTGGGCCTCCTGGGCCTCAGCCTGTATGGGACCACCATGGTGCACGACGGCCTCTACCTAACCGACATTGTGCCACGCGACACCAAGGAGTATGATTTCATCGACGCCCAGTTCAAGTATTTCTCCTTCTACAACATGTATCTGGTGACCATGGATGGATTTGATTACGCCCAGTCACAGAGGCTGCTGATCCAGCTGCACAACGCCTTCAACTCTGTTAAATACGTGGTCAGAGACAGCGACAACAAACTGCCCCGAATGTGGCTGCACTACTTCCAGGACTGGCTAAGAGGTCTTCAGGCTGCTTTTGATGCAGactggcaggcaggcaggattACCTCTGACAGCTATCGTAACGGCACAGAGGACGGAGCGCTGGCGTACAAGCTCCTCATCCAGACCGGCTCCAAGAAAGAGCCTTTTAACTACAGCCAGCTGACTTCTCGTCGGCTGGTGGACGCAGAGGGTTTGATCCCGGCAGAGGTGTtttacatttacctgacagtcTGGGTCAGTAATGATCCTCTGGGCTATGCTGCCTCCCAGGCCAATTTCTACCCCCATCCTAGAGAGTGGATTCACGACAAGTATGACACTACAGGGGAGAATCTGCGCATCCCAGCTGCAGAGCCCCTGGAGTTTGCCCAGTTCCCCTTCTACCTGAACGGCCTTCGCCAGGCCAGCGACTTTGTGGAGGCCATTGAGAGTGTGCGCTCCATCTGCGACGAGTTTAGTCGCAAGGGCGTGTTAAACTACCCTAACGGATACCCCTTCCTGTTTTGGGAGCAGTACATTGGTCTCAGACACTGGTTCCTGCTGGCAATCAGCGTGGTGCTGGCCTGCACCTTCCTGGTCTGTGCGATTCTCCTGCTCAACCCCTGGACTGCCGGCATCATTGTGTTTATCTTGGCCATGATGACGGTGGAGTTGTTTGGCATCATGGGTCTGATTGGAATTAAGCTGAGCGCCATCCCTGTAGTCATTCTGATTGCCTCTGTGGGCATTGGGGTGGAGTTCACCGTTCACATCGCACTGGGCTTCTTGACAGCGATCGGCAACAGAAACAAGCGCTCGGCAGTGGCTCTGGAGCACATGTTTGCCCCGGTGGTTGACGGAGCGATCTCCACGCTGCTTGGCGTTCTCATGCTTGCAGGGTCAGAGTTTGACTTCATCATGAGGTATTTCTTTGCTGTGTTGGCTATCCTCACTGTATTGGGGATGCTGAATGGCTTGGTCCTCCTGCCAGTCCTCCTGTCCATGATGGGCCCTCCAGCTGAGGTCACCCCGGTTGACAATGCCAGCCGCTTGCCGACGCCTTCCCCTGAACCCCCACTGCCTCCACCCATGACCCACCATGGGTACTACACGGGCCACCACAACCCACGGTCGTCTCGTCAACAGGCTTTTTCGGAGTCGTCAGACTCTGAGTATTACTCGGAGATGACCACCACGTCAGGGATCGGGGAGGAGGATTATAAGTACTGTGACCAGAGCGCGTACATAGCATCGCAGACCAACATTCCACCTGCAACATCTCACATACTGCTGGAAGCCAGCAAGAATCCAAGCTTCCCCAAGCTTACGGTGGTGAAGCCATTCAGGGAAAATGCAACAGGCACTGGCGGAAGGATAGAACCATTAAATGAATCTTCCCACAACGCACAGTCACCTCTCGGCTCCCAGGTTACATGTTGGGATGGAAACAAGCAACAGCCGGGCCTCCAGAGGCTCCAGGCACAACACTTACCCAGCGACAGAGCTAACTTCCCTGGGAGGACTTGTCAAAGTGGCCCCAGGCTGCAGAACGCCAGAGGGCCTCAGCCAAACAGGACTAAAGGGCCGAGCTATAGCAATAGCAACTCCGCCCTGCCGACGGGCTGCACAGGGGGacctgttaccatggtaacGGCCACAGCCTCTGTGACGGTGGCTGTGCATCCAACCTTGCCAGGGGCGGCATACCAAGGCTATATGCATGAAGGTTTTGACACGGACAGTGAGTCGGACTGTTTTGAGGCTGCTAAGAGGACTGGTGACAAAACAAACTTTTCTTCATGTAAGAGAGACTCTTTAGAGCTCCAGGACTTGGAAGCAACACAGAGCCAGACAGAGCATCAAATCGGCAAGACAAAAGGTGGGTTGAGGATCCAGGCAGCCAAAGATTGCTAGACTGTCTGCCACACCCTGCCTTCTCTCTTCGAGTCTCTGGCTGCTTCTCCAGAGCACCTTGGCGCATCACATGGCGTCACATCACATGTTGAACTCTCAACTGTACATAGACTTCACACAAAAAGGATTTATTTCAAGGACATATTAAGAGAAAATGACATTTTAAGAATTATATAAATCTATGAGTATATATTTTAATACTAAACAAGAAGGAAGCTATTTAAAAGAGTACTGTATAACTTGGGTATACTCTTGTGTAAAAGTTAAGAtgtaaaagattatttttttgtggggCGGTTGATTGTTTTTCCCCCCACAGTGTATAGAATAAGAAATGTGCTATATGTAAAAAGTGTCCAGAAAAAGTGAGATGTTATTAAGATATTAGGCTATTGAACATACATGGTCAGtgttttatttctatttgtattatgttctctttttttgctgCTACACACTACAACATTTTAAGTGATTTGCCTTAAAAAATGCAGTACCCTTTCCTCCCCCTCTGGTTTTACAGTGTTTTACTGTGAGATATTCTGCATCTGAAACATTCTCTGTTGTAGTTTAATTATAGATGCTACCTGTCACAGTGTGCActgtagaaaaagaaaaagaaagacaaaaaagcaGAATTACACAGCAGATACTGTTTTCTTAACAGTAGAAACCGTCGTGCCTTCAATTTGTCTCCTTATCCTTGTCATCACAGCATTCAGCGCTCAGTATTATGTCCTTGCTttggtgtatgtatgttttgtcTCGTCCAGAAACAGAATGTTTGTCAAGAAGCAGTAGTAGACTGACGTTTGCCAGTTATCACCATTATCTGTCCATCTATCTGAATATTGCTGAATGTGATTCGTCAGCCAGCATGCTGACAGAGTCACACCTAACTCATTTTTCATGTTACATTTTGTCTGGGTGTCCCAACGTCTTGTGCAGTTTTAAACTACTTGAAGGAGCTGtgataagattttttttcttcagcagtTTTTGTAAGCTCTACAGTGGGTGAATTAACATTTGTCACTTAGTGTTTGACAATTGTTCACCTTCTTGTATTATTTTGAAAGGGAATTATAAAATCCAATGCAAAGGGAGTgattttattatgttatttttattttgctggCTGCTTTAGAGTTGTAACACGCTCATGTTGTTTCGACCCTGTGCAAATATTACATTGTGTAAACTGGTTCAGTCTTCATAATGCTCCAACCTGCTCTGACTCACTTTCTAATGTCTCACTCTTCTTGCTAATACGAACCTCATATATGCcacattacattttctttcattcttaGGATTTTCATGTAATTTGCTTTACAAAGTttccattgttgttgttgttcagtaTTGGTCTCATCACTGCCGGGTTAAATTGCAGGGAAAAACTTGCGGAtctattttttcatttcattttttaagtggcagctttgttttcttttgtacaTATGAAAGAAAAGTTGAGTAGCTACTGTGCAGTTGTGAATACTTAAGCAGAATGAGCAAAGCACCATTTACAGTTTGATCAGACCGTAGACCGCCAGCAGGTGTTGTCAGACAGTGGTGAGGAGTTTAAAAGGGA

Function

symbol description
ptch2 Predicted to enable hedgehog family protein binding activity; hedgehog receptor activity; and smoothened binding activity. Acts upstream of or within several processes, including cardioblast differentiation; negative regulation of smoothened signaling pathway; and retinal ganglion cell axon guidance. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including central nervous system; digestive system; head; mesoderm; and musculature system. Used to study coloboma. Human ortholog(s) of this gene implicated in basal cell carcinoma; medulloblastoma; and nevoid basal cell carcinoma syndrome. Orthologous to human PTCH2 (patched 2).

NR:

description
PREDICTED: protein patched homolog 2

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008158 hedgehog receptor activity molecular_function

KEGG:

id description
K11101 PTCH2; patched 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816633.1 True 6052 mRNA 0.50 23 24808244 24837694

Neighbor

gene id symbol gene type direction distance location
eif2b3 eif2b3 coding upstream 10996 24759165 ~ 24797248 (+)
plk3 plk3 coding upstream 122665 24676983 ~ 24685579 (+)
mrps14 mrps14,LOC101476193 coding upstream 146180 24660132 ~ 24662064 (+)
tnr tnr coding upstream 262484 24374289 ~ 24545760 (+)
LOC120568202 NA coding upstream 530166 24269684 ~ 24278078 (+)
kif2c kif2c,LOC101470919 coding downstream 16100 24853794 ~ 24861945 (+)
LOC120568223 NA coding downstream 37307 24875001 ~ 24876959 (+)
LOC120568221 NA coding downstream 50067 24887761 ~ 24892439 (+)
zgc:153615 schip1,LOC104951462,LOC103396042,LOC100710109,LOC101472499 coding downstream 56861 24894555 ~ 24906946 (+)
LOC120568308 NA coding downstream 70143 24907837 ~ 24911335 (+)
G117547 NA non-coding upstream 251587 24556419 ~ 24556657 (+)
LOC120568139 NA non-coding upstream 468988 24337693 ~ 24339256 (+)
G117523 NA non-coding upstream 549413 24257554 ~ 24258831 (+)
G117488 NA non-coding upstream 638291 24169668 ~ 24169953 (+)
G117487 LOC104957881 non-coding upstream 638689 24164854 ~ 24169555 (+)
G117632 NA non-coding downstream 262 24837956 ~ 24838229 (+)
G117704 NA non-coding downstream 280537 25118231 ~ 25118502 (+)
LOC120568228 NA non-coding downstream 288137 25125831 ~ 25130929 (+)
LOC120568901 NA non-coding downstream 944481 25782175 ~ 25793191 (+)
LOC120568900 NA non-coding downstream 1034635 25872329 ~ 25873402 (+)
LOC120569045 cacybp other upstream 132490 24667879 ~ 24675754 (+)
LOC120568789 kiaa0040,LOC102782613 other upstream 229932 24569528 ~ 24578312 (+)
LOC120569114 NA other upstream 753540 24049764 ~ 24054704 (+)
G117400 LOC104965054 other upstream 784585 24022441 ~ 24023659 (+)
hes6 LOC104918282,LOC104941260,LOC103366710 other upstream 893746 23912664 ~ 23914498 (+)
selenot1a selenot,LOC103365166 other downstream 25302 24862996 ~ 24870087 (+)
G117664 NA other downstream 112874 24950568 ~ 24954247 (+)
fgf12a fgf12,LOC100711708,LOC108245531,LOC107083782,LOC107384013,LOC103396031,LOC103365152,LOC103148287,LOC101467833,LOC106535044,LOC102236041,LOC105935916 other downstream 149805 24987499 ~ 25044057 (+)
LOC120568894 LOC102789372,LOC104966552 other downstream 905633 25743327 ~ 25773468 (+)
LOC120568895 NA other downstream 936083 25773777 ~ 25793954 (+)

Expression


Co-expression Network