lig1 (lig1,LOC102777267)



Basic Information


Item Value
gene id lig1
gene name lig1,LOC102777267
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 31942203 ~ 32016352 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>XM_039816638.1
TTGGCTGGGATGTCACTTTGGCGCCGAATATTTGTCATTCTGCAGCGCGGGAGTTAGTTGGTGTATTTTTATGTGGATGTTGGATCCTGTGCTTTAATTTAACCATTAGTCTTAATCTAGTATCTATTAGGTGAAGGACGAATTTGAAGACAACATGCAGCGGAGCATCGCATCCTTCTTTCAGCCCAAGTGCAAGGACAAGGATATGCAGAAGAAATCCACAGATGGACCAGTGAAaaaACCTGTGAAAAGCCCTCTCAAGGTGCAGAACGGTGTTCAGAAGGCTGATTCACCCGTCACCAAGAAAGTTGCCAAACGCAGCCGTCAGATCCTGGACAGCGATGATGACGACGCGCCGGTCATTAAAGAGCAAGTCGCCACCAAGGGATATGGAGACAAAGAAGCTCTTGGTAAAACTGAAAAGAAGGATGCTGTCTTTACGGCAGTTCCCACCCCCCTGTCTCCTCCACCTGCCCCGGCCACCCCTGTAACTCCCGCTACTCCAGCCACCCCAGCTTCTTCGGCTTCACCCGGGACCCCCGGCACCCCAAACTCCATCTCCCCCTCTGGCATCGTTAAACGCAAGACTGCGAGGAAGATGTTCCCCAAGAGGAAGCTGGATGAGAGCAGGAGCGGCAGTGAGAGTCAGAAAGACGAAGCAGAGGCCAAGGAGGAGCAGGGTCAGCAAAACAAACGCGCCCGTGTGGAGAACAGCGCCAGCGGCACAGGGAACACAGACAAACCCATGGACGAGGacacaaaggaagagagagTTGAAAAGGCAGTGGCCGTGGCTAACAGCccagatgaggaggaggtgaagaagaagaagagagaggaagaagagaaggcCAAGGAGGAGGAGCGGGTGAAGCAAACGAGCTCTgatgagaaggaaaaaaaagctgaGGGGGCGGAAAATGAAGAGGAAGCAAAGGAGAAGACAGATGATGAGAAAAGGCCTGCCACTGCCAAGAAGAAGGAGGCGGTTGAAAAGGACACGCAAGAGGGAGAAGGGAGCCCAAAAAGTCAAACGGCGAGAAAGCAGAAAGAAGCAAAAGAGCAGAAAGATAAGGAGCCGCCCAAGAAAGCCCCCATCAGCAGTTTCTTTGCTCCAAGAAAAGCTGCAGTGAAGACGGAGAAAGCAGAGGAGAGTGAAGGGGAGAAAAAGACGAGTGCAGAGAGGAAGCCCTCAGCAGAGGACAGTAAAGACACAAAAAGTGAGTCGACCTCCGGACAAACGGACTACGATCCGTCCAGGCCCAAATACCATCCTGTGGACCATGCCTGCTGGAAGCAGGGCCAAAAAGTGCCGTACTTGGCGGTGGCTCGCACCTTTGAGAAGATTGAAGAGGACTCTGGCAGGTTGAGAAACATCGAGACGCTGTCGAACCTGCTTCGCTCCGTGCTGCTGCTCTCTCCAGATGACCTGTTGtgctgtgtgtacctgtgtttgAACCAGCTCGGTCCTGCCTACCTGGGGATGGAGCTTGGTGTTGGAGAGACGGTGCTAATGAAAGCTGTTGCTCAAGCaactgGGCGACAATTGGACAAAATCAAGGCAGAGGCGCAGGAGAAAGGTGATTTGGGCCTTGTGGCCGAGAGTTCCCGTAGCAACCAGCGCATGATGTTTCAGCCAGCCAGTCTGACAGCAGGGGGCGTGTTCAGGAAATTGAAGGAAATTGCCAGCATGAGTGGGAACTCGGCCATGAATAAGAAAATCGACATCATCAAAGGCCTCTTTGTGGCATGCCGCTTTTCCGAGGCCCGCTATATAGTCAGGTCTCTGGCTGGGAAGCTGAGGATAGGCCTGGCTGAGCAGAGTGTCCTATCTGCACTGAGCCAGGCTGTGTGCCTGACCCCCCCTGGACAAGGTTTCCCTCCCGCTGTGATCGACGCAGGGAAGGGTATGAGCACTGAGAGCAGGCGGGCCTGGATCGAAGAGAAGAGTCTCATTCTCAAACAGACTTACTGCGAGATGCCCAATTACGACGTCATCATCCCTGTTCTGCTAAAAGAAGGCATAGACGAGCTACCCAATCACTGCAAGCTCACTCCAGGTGTGCCGTTGAGACCCATGTTGGCTCACCCCACCAAGGGTGTCGGCGAGGTGATGAAGAGGTTTGACGAGGCGGCGTTCACCTGCGAATACAAATACGATGGAGAGCGAGCACAGATTCACATTCTGGAGAGTGGCGAGGTTCGCGTATTCAGCCGCAACCAGGAAGACAACACCAGCAAATACCCCGATATCATCTCTCGCATTCCCAAGGTGAAGAAGGACTCTGTGGTGTCGTGCGTCCTGGACTCTGAGGCGGTGGCCTGGGATCGGGAGAAGAAACAGATCCAGCCCTTCCAGGTCCTAACCACCCGCAAGAGAAAGGACGTGGATGCTTCTGAGATCAAAGTCCAGGTGTGCGTGTACGCCTTTGACCTGCTCTATCTCAACGGCGAGtCTCTAGTGCGACAGCCGTTGAGTCGGCGTCGGGCTCTGCTGAAAGAAAGCTTCTCAGAGGTGGAGGGAGAGTTTGTGTTCGCCCGATCCATCGACTCCGACAACACCGACGCCATCGCAGAGTTCCTGGAGCAGTCTGtccgagactccTGCGAGGGTCTAATGGTGAAAACTCTGGAGAAGGATGCCACCTATGAAATTGCCAAGCGCTCTCACAACTGGCTCAAGCTGAAGAAAGACTACCTGGACGGGGTGGGCGACACAGTCGACCTGTGTGTTATCGGCGCCTACCTGGGAAAAGGCAAGAGGACGGGCACCTACGGGGGCTTCCTGCTGGCCTGCTACGACGAGGACAACGAGGAGTTCCAGTCAGTCTGcaagATCGGGACAGGCTTCAAGGATGAAGATCTGGAGCAGCATTACAAGTTCTTAAAGGAGCACATTCTGCCCAAGCCCCGTGCCTACTACCGCATCGACCAATCAGCAGAGCCCGATGTGTGGCTGGACGCCGTGCAGGTTTGGGAGGTGAAGTGCGCTGACCTGTCGCTGTCGCCCGTCTACAAGGCCGCTATGGGAATGGTGGATCCAGAAAAGGGCATTTCTCTGAGGTTCCCTCGCTTCCTTCGGATCAGAGACGACAAGAAGCCCGAGGACGCCACGACCGGAGCTCAGATTGCTGATTTGTacaagaagcagcagcagattcAGAACCAGGGTGAGAAAGCTGACCCCGAGGACTACTACTGATCAATTGTAGTCATCAGCAGAGAATAATAAATAATGGCAATTtcaaaaataattgtaaatagcttcttttctttatgtaatttcaaatgaaaataaaggctCTTTGCCAGTTTTAAGCA
>XM_039816639.1
TTGGCTGGGATGTCACTTTGGCGCCGAATATTTGTCATTCTGCAGCGCGGGAGTTAGTTGGTGTATTTTTATGTGGATGTTGGATCCTGTGCTTTAATTTAACCATTAGTCTTAATCTAGTATCTATTAGGTGAAGGACGAATTTGAAGACAACATGCAGCGGAGCATCGCATCCTTCTTTCAGCCCAAGTGCAAGGACAAGGATATGCAGAAGAAATCCACAGATGGACCAGTGAAaaaACCTGTGAAAAGCCCTCTCAAGGTGCAGAACGGTGTTCAGAAGGCTGATTCACCCGTCACCAAGAAAGTTGCCAAACGCAGCCGTCAGATCCTGGACAGCGATGATGACGACGCGCCGGTCATTAAAGAGCAAGTCGCCACCAAGGGATATGGAGACAAAGAAGCTCTTGGTAAAACTGAAAAGGATGCTGTCTTTACGGCAGTTCCCACCCCCCTGTCTCCTCCACCTGCCCCGGCCACCCCTGTAACTCCCGCTACTCCAGCCACCCCAGCTTCTTCGGCTTCACCCGGGACCCCCGGCACCCCAAACTCCATCTCCCCCTCTGGCATCGTTAAACGCAAGACTGCGAGGAAGATGTTCCCCAAGAGGAAGCTGGATGAGAGCAGGAGCGGCAGTGAGAGTCAGAAAGACGAAGCAGAGGCCAAGGAGGAGCAGGGTCAGCAAAACAAACGCGCCCGTGTGGAGAACAGCGCCAGCGGCACAGGGAACACAGACAAACCCATGGACGAGGacacaaaggaagagagagTTGAAAAGGCAGTGGCCGTGGCTAACAGCccagatgaggaggaggtgaagaagaagaagagagaggaagaagagaaggcCAAGGAGGAGGAGCGGGTGAAGCAAACGAGCTCTgatgagaaggaaaaaaaagctgaGGGGGCGGAAAATGAAGAGGAAGCAAAGGAGAAGACAGATGATGAGAAAAGGCCTGCCACTGCCAAGAAGAAGGAGGCGGTTGAAAAGGACACGCAAGAGGGAGAAGGGAGCCCAAAAAGTCAAACGGCGAGAAAGCAGAAAGAAGCAAAAGAGCAGAAAGATAAGGAGCCGCCCAAGAAAGCCCCCATCAGCAGTTTCTTTGCTCCAAGAAAAGCTGCAGTGAAGACGGAGAAAGCAGAGGAGAGTGAAGGGGAGAAAAAGACGAGTGCAGAGAGGAAGCCCTCAGCAGAGGACAGTAAAGACACAAAAAGTGAGTCGACCTCCGGACAAACGGACTACGATCCGTCCAGGCCCAAATACCATCCTGTGGACCATGCCTGCTGGAAGCAGGGCCAAAAAGTGCCGTACTTGGCGGTGGCTCGCACCTTTGAGAAGATTGAAGAGGACTCTGGCAGGTTGAGAAACATCGAGACGCTGTCGAACCTGCTTCGCTCCGTGCTGCTGCTCTCTCCAGATGACCTGTTGtgctgtgtgtacctgtgtttgAACCAGCTCGGTCCTGCCTACCTGGGGATGGAGCTTGGTGTTGGAGAGACGGTGCTAATGAAAGCTGTTGCTCAAGCaactgGGCGACAATTGGACAAAATCAAGGCAGAGGCGCAGGAGAAAGGTGATTTGGGCCTTGTGGCCGAGAGTTCCCGTAGCAACCAGCGCATGATGTTTCAGCCAGCCAGTCTGACAGCAGGGGGCGTGTTCAGGAAATTGAAGGAAATTGCCAGCATGAGTGGGAACTCGGCCATGAATAAGAAAATCGACATCATCAAAGGCCTCTTTGTGGCATGCCGCTTTTCCGAGGCCCGCTATATAGTCAGGTCTCTGGCTGGGAAGCTGAGGATAGGCCTGGCTGAGCAGAGTGTCCTATCTGCACTGAGCCAGGCTGTGTGCCTGACCCCCCCTGGACAAGGTTTCCCTCCCGCTGTGATCGACGCAGGGAAGGGTATGAGCACTGAGAGCAGGCGGGCCTGGATCGAAGAGAAGAGTCTCATTCTCAAACAGACTTACTGCGAGATGCCCAATTACGACGTCATCATCCCTGTTCTGCTAAAAGAAGGCATAGACGAGCTACCCAATCACTGCAAGCTCACTCCAGGTGTGCCGTTGAGACCCATGTTGGCTCACCCCACCAAGGGTGTCGGCGAGGTGATGAAGAGGTTTGACGAGGCGGCGTTCACCTGCGAATACAAATACGATGGAGAGCGAGCACAGATTCACATTCTGGAGAGTGGCGAGGTTCGCGTATTCAGCCGCAACCAGGAAGACAACACCAGCAAATACCCCGATATCATCTCTCGCATTCCCAAGGTGAAGAAGGACTCTGTGGTGTCGTGCGTCCTGGACTCTGAGGCGGTGGCCTGGGATCGGGAGAAGAAACAGATCCAGCCCTTCCAGGTCCTAACCACCCGCAAGAGAAAGGACGTGGATGCTTCTGAGATCAAAGTCCAGGTGTGCGTGTACGCCTTTGACCTGCTCTATCTCAACGGCGAGtCTCTAGTGCGACAGCCGTTGAGTCGGCGTCGGGCTCTGCTGAAAGAAAGCTTCTCAGAGGTGGAGGGAGAGTTTGTGTTCGCCCGATCCATCGACTCCGACAACACCGACGCCATCGCAGAGTTCCTGGAGCAGTCTGtccgagactccTGCGAGGGTCTAATGGTGAAAACTCTGGAGAAGGATGCCACCTATGAAATTGCCAAGCGCTCTCACAACTGGCTCAAGCTGAAGAAAGACTACCTGGACGGGGTGGGCGACACAGTCGACCTGTGTGTTATCGGCGCCTACCTGGGAAAAGGCAAGAGGACGGGCACCTACGGGGGCTTCCTGCTGGCCTGCTACGACGAGGACAACGAGGAGTTCCAGTCAGTCTGcaagATCGGGACAGGCTTCAAGGATGAAGATCTGGAGCAGCATTACAAGTTCTTAAAGGAGCACATTCTGCCCAAGCCCCGTGCCTACTACCGCATCGACCAATCAGCAGAGCCCGATGTGTGGCTGGACGCCGTGCAGGTTTGGGAGGTGAAGTGCGCTGACCTGTCGCTGTCGCCCGTCTACAAGGCCGCTATGGGAATGGTGGATCCAGAAAAGGGCATTTCTCTGAGGTTCCCTCGCTTCCTTCGGATCAGAGACGACAAGAAGCCCGAGGACGCCACGACCGGAGCTCAGATTGCTGATTTGTacaagaagcagcagcagattcAGAACCAGGGTGAGAAAGCTGACCCCGAGGACTACTACTGATCAATTGTAGTCATCAGCAGAGAATAATAAATAATGGCAATTtcaaaaataattgtaaatagcttcttttctttatgtaatttcaaatgaaaataaaggctCTTTGCCAGTTTTAAGCA

Function


symbol description
lig1 Predicted to enable DNA ligase (ATP) activity. Predicted to be involved in DNA ligation and Okazaki fragment processing involved in mitotic DNA replication. Predicted to act upstream of or within DNA metabolic process and DNA replication. Predicted to be active in mitochondrion and nucleus. Human ortholog(s) of this gene implicated in inherited metabolic disorder and primary immunodeficiency disease. Orthologous to human LIG1 (DNA ligase 1).

NR:

description
PREDICTED: DNA ligase 1 isoform X1

GO: NA

KEGG:

id description
K10747 LIG1; DNA ligase 1

RNA


RNA id representative length rna type GC content exon number start site end site
XM_039816638.1 True 3321 mRNA 0.53 27 31942203 32016352
XM_039816639.1 False 3318 mRNA 0.53 27 31942203 32016352

Neighbor


gene id symbol gene type direction distance location
LOC120568893 LOC100705068 coding upstream 2725 31929145 ~ 31939478 (+)
eif3f eif3f coding upstream 76968 31860730 ~ 31865235 (+)
LOC120568980 NA coding upstream 488743 31431806 ~ 31453460 (+)
LOC120567691 LOC107740693 coding upstream 930879 31007722 ~ 31011324 (+)
LOC120568730 LOC101472437,LOC102310659,LOC102778004,LOC103360659,LOC106534850 coding upstream 1723481 30101634 ~ 30218722 (+)
mpz mpz,LOC102776110 coding downstream 15300 32031652 ~ 32051435 (+)
LOC120568430 LOC103373937,LOC105937883,LOC100694151 coding downstream 58724 32075076 ~ 32115947 (+)
sdhc sdhc,LOC103479501 coding downstream 102601 32118953 ~ 32124498 (+)
trnar-ucu_14 NA coding downstream 110005 32126357 ~ 32126430 (+)
kirrel1b LOC101488125,LOC102302400,LOC100705859 coding downstream 215856 32232208 ~ 32325647 (+)
G119332 NA non-coding upstream 26602 31849440 ~ 31915601 (+)
G119328 NA non-coding upstream 99232 31838382 ~ 31842971 (+)
G119306 LOC103370525 non-coding upstream 210913 31730145 ~ 31731290 (+)
G119285 NA non-coding upstream 299005 31641354 ~ 31643198 (+)
LOC120568739 NA non-coding upstream 331442 31608971 ~ 31610761 (+)
LOC120567918 NA non-coding downstream 39703 32056055 ~ 32059373 (+)
G119398 NA non-coding downstream 108212 32124564 ~ 32124915 (+)
G119409 NA non-coding downstream 324773 32341125 ~ 32341363 (+)
G119415 NA non-coding downstream 331769 32348121 ~ 32349713 (+)
G119416 NA non-coding downstream 348214 32364566 ~ 32364768 (+)
pip4p1a tmem55b,LOC101161334 other upstream 27499 31888908 ~ 31914704 (+)
dnaaf6 pih1d3,LOC106903480,LOC103138000,LOC103138005,LOC103137996,LOC106960166 other upstream 72708 31865755 ~ 31869495 (+)
G119257 NA other upstream 481295 31459864 ~ 31460908 (+)
G119123 NA other upstream 706638 31198960 ~ 31235565 (+)
G119114 NA other upstream 738617 31165226 ~ 31203586 (+)
LOC120567694 LOC103373937,LOC106569580,LOC100136182,LOC107383461,LOC106960171 other downstream 51211 32067563 ~ 32071312 (+)
cadm3 cadm3 other downstream 112106 32128458 ~ 32226483 (+)
LOC120568569 NA other downstream 436353 32452705 ~ 32471570 (+)
G119582 vangl2,LOC103137974 other downstream 752355 32768707 ~ 32769852 (+)
G119584 vangl2,LOC102795188 other downstream 758722 32775074 ~ 32775682 (+)

Expression



Co-expression Network