rpl5a (LOC104920939,LOC100700425,LOC103149531,LOC106904255,LOC106958298,LOC107396374)


Basic Information

Item Value
gene id rpl5a
gene name LOC104920939,LOC100700425,LOC103149531,LOC106904255,LOC106958298,LOC107396374
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 33657799 ~ 33661745 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816651.1
GTGTTGTCCACCGGGGCCGCAGGGGGCGCTGCCTGCTCAACAGACGGCCCTACTCGTGAGGAAAAGTTGCCAGGTTAACTTCCGCCGCAAAGAGACACATCTGAGTCCAAGAGGAAGGCGAGTAAAATCCGCCTAAAATGGGTTTCGTCAAAGTGGTGAAGAACAAGGCCTACTTCAAGAGATACGAAGTCAAATTCAGGAGAAGAAGAGAGGGAAAAACGGACTTCTTTGCCCGCAAGCGCCTGGTTGTGCAGGACAAGAACAAGTACAACACGCCCAAGTACCGCATGATCGTCAGGTTCTCCAACAGGGACATCTGCTGCCAGATTGCATATGCAAAGATTGAAGGAGACCATATTGTGTGTGCTTCTTACTCTCACGAGCTTCCCAAATATGGCATCACTGTAGGCCTCACTAACTATGCTGCGGCCTACTGCACCGGGCTGCTGCTGGCTCGCCGGCTGCTGCACAAGTTTGGCATGGATCAGGTGTACGAGGGCCAGGTGGAGGTGACGGGAGATGAGTTCAACGTGGAAAGCATTGACGGACAGCCCGGTGCCTTTACCTGTTACCTGGACGCAGGCCTGGCCAGAACCACCACAGGGAACAAGGTTTTTGGAGCGCTGAAGGGGGCAGTCGACGGAGGCCTGGCCATTCCTCACAGCCTGAAACGTTTCCCCGGTTACGACACAGAGAGTAAAGAGTTCAACGCCGAGGTGCATCGGAAACACATCATGGGCATGAACGTGGCCGACTACATGTCCTACCTGAtggaggaggacgaggacgcCTACAAGAAACAGTTCTCTCGCTTCATCAAGAACGGAGTCACGCCAGACACGGTCGAAGAAATGTACAAGAAAGCACACGCCAGCATCCGAGCAAACCCCGCCCACGAAAAGAAAGCCACAAAAGACGTCAAGAAGAAGAGGTGGAATCGCGCCAAGTTATCTCTGGCACAGAGGAAGGATCGCGTCGCCCAGAAAAAGGCCAGCTTCTTACGAGCACAAGAGCAAGAAGAAGGGGACGGTTAGGTGTTCCGCTGCAAAAACCCAACACACATCACAGACAAATAAATTTATTACAAACCCAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K02932 RP-L5e, RPL5; large subunit ribosomal protein L5e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816651.1 True 1093 mRNA 0.53 8 33657799 33661745

Neighbor

gene id symbol gene type direction distance location
rpap2 NA coding upstream 14216 33622388 ~ 33643583 (+)
cdc7 cdc7 coding upstream 47196 33602063 ~ 33610603 (+)
hfm1 hfm1 coding upstream 56348 33574164 ~ 33601451 (+)
LOC120569066 NA coding upstream 97891 33551632 ~ 33559908 (+)
lrrc8da LOC103355795 coding upstream 107920 33533074 ~ 33549879 (+)
mtf2 mtf2 coding downstream 20956 33682701 ~ 33698786 (+)
ccdc18 NA coding downstream 39887 33701632 ~ 33729640 (+)
scinlb LOC106958286,LOC106904251,LOC103149535 coding downstream 81514 33743259 ~ 33767779 (+)
wls wls coding downstream 107134 33768879 ~ 33809676 (+)
dmbx1a dmbx1,LOC102206215,LOC102778954,LOC100697381,LOC103354234 coding downstream 267322 33929067 ~ 33938778 (+)
G119922 NA non-coding upstream 59142 33597873 ~ 33598657 (+)
G119901 NA non-coding upstream 95728 33538172 ~ 33562071 (+)
G119767 NA non-coding upstream 367219 33290330 ~ 33290580 (+)
G119763 NA non-coding upstream 388597 33268370 ~ 33269202 (+)
G119744 NA non-coding upstream 464600 33192587 ~ 33193199 (+)
LOC120569016 NA non-coding downstream 199693 33861438 ~ 33866996 (+)
LOC120569017 NA non-coding downstream 205650 33867395 ~ 33870784 (+)
G119961 NA non-coding downstream 206024 33867769 ~ 33868000 (+)
G119963 NA non-coding downstream 206641 33868386 ~ 33868686 (+)
G120058 pif1 non-coding downstream 314083 33975828 ~ 33976887 (+)
pkn2a pkn2 other upstream 142375 33477336 ~ 33515424 (+)
G119769 grk7,LOC106528614,LOC104920904 other upstream 349935 33304822 ~ 33307864 (+)
LOC120568463 NA other upstream 491699 33163916 ~ 33166100 (+)
tep1 LOC104950563,LOC104941471 other upstream 608718 32988817 ~ 33049081 (+)
G119585 NA other upstream 876328 32780988 ~ 32781471 (+)
gng12a gng12,LOC104920945,LOC104956611,LOC103354642 other downstream 149223 33810968 ~ 33851937 (+)
G119957 gadd45a,LOC106598934,LOC106568974 other downstream 196797 33858542 ~ 33859847 (+)
LOC120568585 LOC108244495 other downstream 293421 33955166 ~ 33957504 (+)
mrpl34 NA other downstream 502335 34164080 ~ 34165852 (+)
LOC120568953 dda1,LOC105024194,LOC106568965,LOC104920954 other downstream 505231 34166976 ~ 34172309 (+)

Expression


Co-expression Network