apoda.1 (LOC103353029,LOC104955147,LOC101484702,LOC102313692,LOC102209340)


Basic Information

Item Value
gene id apoda.1
gene name LOC103353029,LOC104955147,LOC101484702,LOC102313692,LOC102209340
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18716358 ~ 18718511 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816657.1
TCTACACAAAGACAGGCATTGATGACACAGCGTCGCACTGCTGCAAAATCTCGCAGAGAGCAACGTCTCCAATTCAAATCCTGGGATTTGTCCGAGGGAGAGAACATATATCTGATCCAACAGGCCACAGAGGTAACAAAGGCCTATCTCAACCATGAAGTTACcttttgttgtggtttttgcCTTCATCCTCCCGCTCATCAGGGCTCAGGTGCCCCATTGGGGACCTTGTCCAGACCCAGCTGTTCAACCGGCCTTCAACCTTAAGCAGTTCATGGGGAGATGGTTTGAAATTGCCAAACTGCCGGCCCAGTTTGAGAAGGGCCGGTGCATCGAAACCAATTTCACTTTGACAACAGACAACTCTATTCGAGTGGTCAGCTCTGAAAAACTaaaaggagAGCTGAGGAAAATCGAAGGGACTGGAGTCATAGAGGATATGAAGAATCCGGCAAAACTGGGAATAAGTTATTCCTACGTCCTGCCCTACTCTCCTTACTGGATCCTGTCCACTGACTACGTGGACTCTGCCCTGGTGTATTCCTGCACGGACATCCTGAGGCTCTTCCACGTCGACTTCGCCTGGATCCTAGGCCGAACGCGAACCCTGCCTGACACCACTGTTGAGAAAGCCATGAATACCTTCGCCAAGAACAACATTGATGTGAGCAGGATGATTCCCAGCAAGCAGCAAGGCTGTGACAAAACTCTCTGAACAGCAATGGAAACACAGAACAAGATGGTGCTGTTGACAGGAGGGAAAATAATTTATCATccatttaagaaaaatctttgaCTAATATTTAGATGATTATGACGAGGGATGTAGTGGAGGGTAGACTCAACTCAGTAACTCAGTTTGTTTATGAGTGAAAACACAGCTTTCCTGCCTTTTTCTAAAAATATTTACAGCACAAAATAACTGCATGCCTATACTGTGCATTATAGTAAGTTAAAGCATACACTAAGTGAAGTCATATTCATACccacctttttatttaacacaTCATCCCTGGTTGTAATATTACATGCTGAGCATAATGTTCTGCCCAGTTTTAGCCATTTAATATTTTCAATTTGTCATAATGAGCAATGTTTGCAGTTTGATTTGCAGTATAAAATCGAATAATCGTATTG

Function

NR:

description
PREDICTED: apolipoprotein D-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005215 transporter activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG:

id description
K03098 APOD; apolipoprotein D and lipocalin family protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816657.1 True 1137 mRNA 0.44 5 18716358 18718511

Neighbor

gene id symbol gene type direction distance location
LOC120568690 NA coding upstream 15131 18699482 ~ 18701227 (+)
LOC120568684 NA coding upstream 33939 18680600 ~ 18682419 (+)
nadkb LOC103353035,LOC102782138,LOC101483211,LOC102289018 coding upstream 91181 18609213 ~ 18625177 (+)
prkci prkci coding upstream 159998 18521969 ~ 18556360 (+)
dapk3 dapk3,LOC102784251 coding upstream 210691 18496691 ~ 18505667 (+)
and2 LOC103353068 coding downstream 12217 18730728 ~ 18737190 (+)
LOC120568945 LOC101485289,LOC100699127 coding downstream 37695 18756206 ~ 18799833 (+)
lrrcc1 lrrcc1 coding downstream 85140 18803651 ~ 18820386 (+)
e2f5 LOC100699665,LOC102779743 coding downstream 102585 18821096 ~ 18833039 (+)
si:ch211-106h4.9 LOC103360860 coding downstream 149571 18868082 ~ 18920043 (+)
G115864 NA non-coding upstream 21712 18694391 ~ 18694646 (+)
G115863 NA non-coding upstream 22057 18693005 ~ 18694301 (+)
LOC120568663 NA non-coding upstream 24237 18689634 ~ 18692121 (+)
G115862 NA non-coding upstream 31893 18683714 ~ 18684465 (+)
G115856 samd7 non-coding upstream 66554 18648774 ~ 18649804 (+)
G115889 NA non-coding downstream 115032 18833543 ~ 18833742 (+)
G115921 NA non-coding downstream 124061 18842572 ~ 18842794 (+)
G115923 NA non-coding downstream 146615 18865126 ~ 18866134 (+)
G115931 NA non-coding downstream 204242 18922753 ~ 18923170 (+)
G115934 NA non-coding downstream 213415 18931926 ~ 18933912 (+)
LOC120568691 NA other upstream 42218 18660429 ~ 18674140 (+)
skila skil,LOC102782637 other upstream 114095 18566633 ~ 18602263 (+)
G115729 NA other upstream 362014 18305149 ~ 18354344 (+)
LOC120567767 NA other upstream 686463 18027280 ~ 18029895 (+)
LOC120568596 LOC103479750,LOC106948690,LOC102229933,LOC103146349,LOC108232807,LOC105930991,LOC100691642,LOC103353958,LOC107383564 other upstream 1232805 17406497 ~ 17483553 (+)
LOC120568911 NA other downstream 1854 18720365 ~ 18725447 (+)
LOC120568770 NA other downstream 298528 19017039 ~ 19052242 (+)
emilin2a NA other downstream 728500 19447011 ~ 19465381 (+)
LOC120567833 gbg5 other downstream 1654716 20373227 ~ 20375633 (+)
LOC120568904 crhr2,LOC101476678,LOC102776588 other downstream 2164106 20882617 ~ 20915322 (+)

Expression


Co-expression Network