LOC120568912 (apcdd1,LOC102777074)


Basic Information

Item Value
gene id LOC120568912
gene name apcdd1,LOC102777074
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 16685480 ~ 16712264 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816659.1
GTCCCCAGTCTCTGAACACAAGTACAAACATCCTCCAGGACGCACGGATGGAGGACGCGCGTAAAAGCTACCGAGCTGCTTTATTTCAAACGTGAACGACAGCGTTGAATTCCGTTAGCGTGTCCAGTAGTAATGTTTggacttttctttgttttctagGTGCTGTTCAGCAGGTACAGCGGGGGTTTTATTCGCTGTAGCGATCCGGAGGCGTGTTTCCTTATGATGCTCGGATATCTCAGAAGTGTATGCTCCCCGCTTTGGATACATAATGCAAGGATTTGTGACGGATTAAACAAGGACGCTGCGTAAAGGAAAACCTGATCTCACCAGTGTGGCCAGTGACGCTTATTTGAATCCTCCAAAGTGCGGAATGGGGCCGTCATCTACACTGCTTATCGTTGCTTTTTTGGGCTGGGCTGAAGGTGGTTCATCTCTTCACTACTCAGATGGTCGATCCAGCCGTCTCTCTCTGGAGAAAACCTTTGGCCGGTCGCTCAAAGACTCCCAGTGCCAACACATGTTGAAGCACCTTCACAATGGAGCCCGAATCGCTGTGCAGATGCCTCCCAACGTAGAGGGTCACTGGGTGTCCACCAGCTGTGAGGTGAGACCAGGCCCGGAGTTCCTGACACGCTCCTACAGTTTCTACTCCAACAACAGCTTTGAAGCTCACCAGTTCTACTACGAGGACAACCACTGCACCAAACCCACCTACACTCTGGTGATCCGGGGTCGTCTGCGCTTACGCCAGGCCTCCTGGATCATCCGCGGCGGTACAGAGGCGGAGTACCACCTCCACCGGGTCCAGATGGTTTGTCACACAGCCACTGTGGCCAAAGAGCTCAGCCAGAGGCTCAACCGCAGCTGCAGAGGGGCCGTTAAGGGCCCCTGGGAGCCCAGTGTGATCTACTCGCTGTGGAGTGAGGAGGGCGGCTACGACTGCTCCAGGGAGCTTAACTTTGCCATGCATGAGCTGCAGCTGCTGAGGGTGGAGAAGCAGTACCTGCATCACAACCTGGATCACCTGGTGGAGGAGCTGTTTCTAGGAGACATCCACACGGAGCCATCCCAGAGGCTGTACTACAAGCCGTCCAGCTACCAAACCGCCCTGCAAAACGCCAAGAACCATGACCACGGCTGCATCGCCTGTCGTATCATCTACCGCTCAGATGAGTTCCACCCTCCCATCCTGCCGCCGCGGGCTGACCTGACCGTCGGCCTGTACGGTCAGTGGGTGAGCCAGCGCTGCGAAGTTCGTCCTGAGGTCCTCTTCCTCACCCGTCACTTCACCTTCCACGACAACAACCACACCTGGGAGGGCAACTACTACCACTACTCTGACCCCGTCTGTAAACACCCCACCTTCACCATCTACGCCCGCGGACGCTACAGCAGAGGGCTACACTCCACCCGCGTCATGGGTGGGACAGACTTTGTCTTCAAGGTGAACCACATGAGAGTAACTCCCATGGACTTTGCCACCACCTCCCTACTCAACGTCTTCAATGGTAACGAGTGTGGAGTGCAGGGGTCCTGGCAGGTCGGGGTGGAGCAGGACGTCACCTTAACCAACGGCTGCGTGGCATTGGGCATCCGTCTCCCCCACACAGAGTACGAGCTTTTCCGCATGGAGCAGGACGCCCACGGCCGCTACCTGCTCTACAACGGCCAGCGTCCCAGCGACGGCTCCAGCCCAGACCGGCCGGAGAAGCGGGCCACCTCCTACCAGATGCCCCTGGTGCAGTGCTCGGCAAGCAGCCAGCCGTCCGAGTACAGCAGAACGGACGACATCGACAGGCCTCTACTGCACCACAACGACTGCACAGGATGGCACAGAGGCAGCCAGCAACACGTCACAGTGGCTCTCATTGCATTCATCACGTCTCTGCTTCTCAGATGGCAAAGCTAGAGAgcagttttctttgtttttacaaaaagacaaaagtgtGGATTAAAAGAACAGACAGCAAAGTAAACTTTCTACTTGTCTGATGAGAAAAGATGAAAACTGGTGTCCCTGATCCTCTGAACTCCCACCCAGCTCCCAAAGACTCGACACTGCTGCACCACAGAAACTTTAGCACTTTAGAGTGGAACCAAAGACCAACCTGTCTGTGTTTCCACAAGTATACAAAGATGTCTATATAGCCACACAGACCTAAGAGTATGTTTTATACAGTGTATTTACAGTAAGTACCTACACCTATCAAGTCATTTTCAACTGCAGAAAGACTATTTGATGTGTGGAAACTTTTGACCGTACGCTCCCTGTCTCGAGAAGATGTACTTGGGGATAGTCTCCGTTTGCAGTAAAAGGGAACGACACTACTTATATTACAGCAGTTTCTTTACATGTTAAAAATCAATTGCTGACATTAGGAGAAACTCATAAGAGGTCAAACCAGGAGGATATACATCATGTTAGAATAAAGTAAATTCCATGCATTCTAAagagacatttttttattcactAACTGGTCAGAGAACTCAATTTCCTTTGGGGCTATTTTGAAATTATAATCATACTCAGATTGGGAAATTGCACCTGGAAACTTGGCATATAAACTCTGTCTCAATAACTGAATACTTCAGAAACACTGtaaaatttgaaataagactGACTAAATTCAATAGAATTGTTTGTTGTAAATGTATGAAAATCACAATCAAATTAATGCATTGAACGGTGTTCCATTGTTGTGCTTACATGCACAAAATGCCTCACGTGTGTAGTAATTTGTGTGTTCAATTTGTTTGGAATCAAACAGTTTTGCAAAAATTACTACAGTATGATCTCCTCGCAATATGATTCCAATACCTATACTgtaaatgaaaatatttaattgttgcCCAGTCAATTTACAGCTGTAActgtttattttataaaatatgtctGGGTCCTTTTTCGGGGAGAGTTGTAGCTTAACTCTACAATTAAAATGCAGATACTATCATTCATTTTCATAGTTAACTATGTTGGCAGTCCGTGCAAGAATTTACTATATGAAAATACTGTAGGTATTTGTGCTGACAGGAAGTGTAGCTTGGATTGCACCTTCGGACATATCAAACTGCAACTTTGGATTTACTACCAGTTTCAAACTGGAAATAGTAAGATATTTTGTtcctcaatttaaaaaataattactgCATTACCATCTgccctttttatcacttttttcctaAGCATATATAGGCCCTTGTTTTTGTAAACTGTTGATTATCTGTCAAGACCTTACATAAAAATATCTAAACTATTCAAGATCGTGCTTGTAAGTAAAGTTTGTTGTAACAACAAATGTAGAAGACCGAGGTTTTTGGGGTAAATATTCCCTCCACTTTCTAAAACTGTGGTCTAACATAAATAACTGGGCATGTCTGTAATTGTAACAAGAATAGTTTCTGGTTACGAAGCCCTGAATAGTAATTCATGTCTTACCTGTCCAGATTGTGAAGCTCCTTGAAAAGTCTTCCAGTAAGGAATCTTTGAAATGACAGAAAACTAGATTAGTGCTCTTTGCTCCTCAAGGTTGTTTCTAATTTTGTGAGTCAAACAATTTCAGAATACCTTTTAAATAGGATTAAGGTCATCAGGTGTGGCACTGTATCAGCAACCCTTTAGTGGTCCACTGGGATCTcgtttttaatattaatgaagGTCACCGCAATCGTCACCCTCTGGATGGGAGACTAGTACCCGTTTGCTCCTACACCCAATAACTTTCAGATTGTTGAAGGACAAATGCATCACAGCATACTCCATTTCTGGAATAGAAAACTTAAAcagccagtttttttttcagactgaAGAACCTGTGTTAAACTCCAAGAAATGTCTTTTTGTAACTGGATACATGTATAAGATTAAAGGTTTGATACTCTTGAA

Function

symbol description
apcdd1 Enables Wnt-protein binding activity and identical protein binding activity. Involved in hair follicle development and negative regulation of Wnt signaling pathway. Is integral component of plasma membrane. Implicated in hypotrichosis 1.

NR:

description
PREDICTED: protein APCDD1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816659.1 True 3889 mRNA 0.46 5 16685480 16712264

Neighbor

gene id symbol gene type direction distance location
acss2l LOC100697261 coding downstream 123317 16541130 ~ 16562163 (-)
napgb napg,LOC102781071 coding downstream 249239 16430142 ~ 16436241 (-)
LOC120568161 LOC104950912 coding downstream 442783 16227938 ~ 16242697 (-)
LOC120567616 LOC103355753,LOC107095425,LOC101067060,LOC108232884 coding downstream 476503 16202077 ~ 16208977 (-)
txndc12 txndc12 coding downstream 541794 16137864 ~ 16143686 (-)
LOC120568957 LOC103353943 coding upstream 39729 16751993 ~ 16754766 (-)
LOC120567917 tmem200c,LOC104967041 coding upstream 102428 16814692 ~ 16820034 (-)
LOC120568369 ptprm,LOC102799796 coding upstream 135546 16847810 ~ 17015626 (-)
LOC120567671 lrrc30,LOC104932041,LOC103353948 coding upstream 308471 17020735 ~ 17022393 (-)
LOC120569119 LOC101466820,LOC102797643,LOC103353954,LOC100700019 coding upstream 453627 17165891 ~ 17176411 (-)
G115323 NA non-coding downstream 70555 16613028 ~ 16614925 (-)
G115309 NA non-coding downstream 125007 16543613 ~ 16560473 (-)
G115278 mtcl1 non-coding downstream 172585 16508577 ~ 16512895 (-)
G115240 NA non-coding downstream 368508 16316651 ~ 16316972 (-)
G115200 NA non-coding downstream 439587 16243792 ~ 16245893 (-)
G115331 NA non-coding upstream 38636 16750900 ~ 16751275 (-)
LOC120569046 NA non-coding upstream 111038 16823302 ~ 16824660 (-)
G115391 NA non-coding upstream 324602 17036866 ~ 17039107 (-)
G115428 LOC103353952,LOC107089435 non-coding upstream 400452 17112716 ~ 17114744 (-)
G115429 NA non-coding upstream 407657 17119921 ~ 17121046 (-)
G115312 ralbp1,LOC102778314 other downstream 45668 16637108 ~ 16639812 (-)
LOC120568735 LOC103355759,LOC101465864,LOC100696456,LOC102781658,LOC102293165 other downstream 349524 16330952 ~ 16335956 (-)
mppe1 mppe1,LOC102781954 other downstream 358054 16317418 ~ 16327426 (-)
cc2d1b cc2d1b other downstream 483782 16182654 ~ 16201698 (-)
G115164 btf3l4 other downstream 537359 16144160 ~ 16148121 (-)
epb41l3b epb41l3,LOC102298622,LOC106534525 other upstream 44067 16756331 ~ 16811918 (-)
ly97.3 NA other upstream 327536 17039800 ~ 17108904 (-)
G115406 crygn,LOC100699485,LOC103353965,LOC103146339,LOC103479740 other upstream 330862 17043126 ~ 17045062 (-)
LOC120568693 rab8a,LOC103479775,LOC101170877,LOC108232971,LOC106516875,LOC107687930,LOC102219409,LOC104931433,LOC104950312,LOC105022474 other upstream 1340720 18052984 ~ 18058159 (-)
sppl2 sppl2b other upstream 1768406 18480670 ~ 18494488 (-)

Expression


Co-expression Network