c11h5orf22 (LOC104934799,LOC103375412)


Basic Information

Item Value
gene id c11h5orf22
gene name LOC104934799,LOC103375412
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 7030085 ~ 7044538 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816667.1
GTCATTTCCGGTGGGTGCCATGCCATGCCAGCCTTGGCTTCAGCTGGTTCTGCTATCAAACAATTTGTTACCAAACCAAACGTGACCAAACTAGACGTGCTTTAGAGGGGACTATGAGAACGTGACGTCCTTTATCTCAACTAGAGTGTAATAATAACGTTGACGTTACTCTGACGGACGGAGTAAACATAGCTACGTTGTTCTCTGTTACAATGAGCTCCGTGCCGCTGAAGAGGTTCTACAAGGAGCTGCCGGTGTGCATAGTGGATGACCACCATGATGTGGTGGGTCATATTTATCGTGCCATTGCATCAAGACACCTTCCACTGAAGGACATAAAGATGGTCCATTTAGACTCCCATCCTGATCTGCTCATCCCTGTCAACATGCCCGCTGACACAGTCTTTGATAAGGAGAAACTATTAAGtgagtTGAGTATAGAAAACTGGATAATGCCCATGGTCTATGCTGGCCATGTGTCATGTGTGGCGTGGCTGCATCCATACTGGGCCCAGCAGATCAGAGAGGGAGAGCACAGGATGGCTGTAGGAAGAGACTCGTCCACCACCACCATTAGGGTGACCAGTACAGACAACTACTTCCTCAGCGATGGTCTGTACGTGTCGGAGAAGCACCTAGAGAACTCTAAACCGCTCTGGCTGAATGTGGTCAAAGTCAATCCTGTTAAACCAAGTCCTGGGCCACTTCCAGaaaagaaaagtgaagaGGACGCCGCGAGACGGTTTGCCAAGAGGCCCCGTACAGAGTGCAGTAAAGCCGGGGAGGCCAGCTGCTCCGAGGCCCCCTTCAGATGCACCGACACACTGCAACCACCAGAGGGCACCACTGGGGCGAGTTTGggtgacgatgatgatgatgatgatgaaggatCCACCAGTTATGTCGTTAAGGGAATATCTGCGTTTCTAAGCGAGACCGAGCCATACATCTTGGACATTGATTTGGATTTCTTTTCATGTAAGAATCCCTTCAAGGAATTATACACACAGGAAGAGTACACCATCCTTAAGGAGCTCTACAACTTCAGGGGACCCAGGCCTGATGCTGCAGAGgAGGAGCTTGATGAGTGTGTGGATTTCCGTGTACGTCAGTTAGAAGACCTGGAAGCGGCATTCGCTGATCTGCTAGAGGACGATGGGGAAGAGACGGTTACACGCTGGGCCAGCAACCCTGGCATGGCTTCATTAGCCCAACTGGTTTCCAGTTTGAAGTCAAGGAATCTGTGCCCGGACTATGAAATGgtccaTCAGGCGGGGTTAACCTGTGACACCGTGGAGCTGCCTCACCACATCAGCACCGACGAGGAGATCGACAGACTCATCTCGGCGGTACAGCTGTGTCTGAAGGCTCTGCCCAAACCGACACTGATTACTATGTCCAGGTCCAGTCTGGATGAATACTGCCCGGTAGAGCAGGTGGATTCGGTCCAGAGCCGAGTACTGGCGGTACTGGAGAGCCTGTACGGAGCACTGGACTTACACAAAGACTACGaaaacagcagcacagagacTCAGGACTGTCAACCACAGGcctcctaacacacacacacacacacacacgtgtcatttttggattggATTTACAGTTTGATAAAAAAAGGACACGTCAGGGGCTGTTTGTTTCAATGAATTCATGTTATATGTTAACATTAGAAGTGGCCATAGATGTTGTAATACTTGTCAACAAATAACGTGTGCAGACTCAAACCACTGAACGATATTGAAACCCATTTGAGAGCGAGTATGTGTCTATGACATTAGGATGCCCCCAGCAGACTGATGAATGAAATGATTTGGGTTCTTTTTTTATCCGTTTTTGTAACCTGGCAATATTGTTCCAGTTCAGTTTTTCTTGAagatcttagtttttatttagtttccttTTACTAAAAATAATTCGTACCGCTTATTTTCGTTTTACAGTAGTTTACTGCACCATCTAGTGGATTGAAAAAGCAATTGATTGTATTATTTTAGTaccaaaaaaagttaaattctcgTGCAATTTATATTTCGATACTTGGAATCTGTGTatcagtattgccacggaagatactgcgatactatgctgtatagatatgtttttttttaccccacCTCTACTCCTCACCTGTACACTGAACGTTGTGTAAAATCAGTTATGTGCTCCTTTACTATTGTTTTACACCGTTTTGTGAAAAAAGTATACAAATGGTAgctatgactttttgttttatatattctACTGTAAGTATAACCAGTGCATTTTAACTACACATGGCCAGAAtctttttgttcttctttttaaataaagtttacaaAATTCA

Function

NR:

description
PREDICTED: UPF0489 protein C5orf22 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816667.1 True 2326 mRNA 0.45 10 7030085 7044538

Neighbor

gene id symbol gene type direction distance location
LOC120568987 LOC104934800,LOC103132244,LOC103479200,LOC103375024 coding downstream 1417 7018394 ~ 7028668 (-)
LOC120568998 LOC103370293,LOC103129992,LOC103396629 coding downstream 14215 7008121 ~ 7015870 (-)
LOC120568496 vipr2,LOC107383421,LOC102775707 coding downstream 162427 6803908 ~ 6867658 (-)
LOC120568072 NA coding downstream 254392 6773520 ~ 6775693 (-)
LOC120568070 NA coding downstream 261187 6765048 ~ 6768898 (-)
LOC120568977 NA coding upstream 186263 7230801 ~ 7232421 (-)
LOC120567743 NA coding upstream 577576 7622114 ~ 7624108 (-)
paxip1 paxip1 coding upstream 697146 7741684 ~ 7767836 (-)
cnpy1 LOC103363935,LOC102314352 coding upstream 773209 7817747 ~ 7836946 (-)
shhb LOC104930803 coding upstream 821856 7866394 ~ 7870117 (-)
G112654 NA non-coding downstream 23105 7006672 ~ 7006980 (-)
G112652 NA non-coding downstream 24703 7004164 ~ 7005382 (-)
G112648 LOC106604074 non-coding downstream 31160 6995058 ~ 6998925 (-)
G112617 NA non-coding downstream 80953 6874665 ~ 6949132 (-)
G112579 NA non-coding downstream 160615 6731759 ~ 6869470 (-)
G112683 NA non-coding upstream 13909 7058447 ~ 7058835 (-)
G112716 NA non-coding upstream 564362 7608900 ~ 7610234 (-)
G112738 NA non-coding upstream 666072 7710610 ~ 7734376 (-)
G112764 NA non-coding upstream 757802 7802340 ~ 7802552 (-)
G112778 NA non-coding upstream 811134 7855672 ~ 7855889 (-)
si:ch211-267e7.3 LOC103370300 other downstream 39963 6956440 ~ 6990122 (-)
zmynd11 zmynd11 other downstream 293573 6695610 ~ 6736512 (-)
LOC120567959 NA other downstream 851199 6172281 ~ 6178886 (-)
G112328 NA other downstream 1177638 5793163 ~ 5852447 (-)
LOC120568546 NA other downstream 1284004 5723733 ~ 5746081 (-)
cdh6 LOC103366829,LOC104926815 other upstream 32071 7076609 ~ 7163670 (-)
trnak-uuu_16 NA other upstream 1442929 8487467 ~ 8487539 (-)
G113070 NA other upstream 1735914 8780452 ~ 8790042 (-)
chd7 chd7,LOC103370133,LOC102782711 other upstream 2069846 9114384 ~ 9194872 (-)
LOC120568397 NA other upstream 2356249 9400787 ~ 9510497 (-)

Expression


Co-expression Network