LOC120568934 (LOC104956577)


Basic Information

Item Value
gene id LOC120568934
gene name LOC104956577
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 12760748 ~ 12768625 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816686.1
GTGTAATGTTGCCATGGAGCGATCCTGATCCATCAGCGGGAGTTACGCTTATATAGCTACTGTCTATGGAGTTACGCATATATGTCAATGGAGTTACGGTAGTCAGTCATGTCAATGTAGTCAGTTAGCTcgattgacatatatataaggttAGCTCTGGGTTACAGGAAAAGATGACAGAATACGTTGATTGATGATTGATACAGAAGAGGCATCAAGAATGGAAGATACCGAGAAAACAAAGCTTGAGGAGTTGCTGATGTGCCCAGTGTGCCAGGACATCTTTAAGGATCCTCGGCAGCTGCCCTGTGGACACAGCATGTGTATGGGCTGTCTGGAAAACATGATGGATCACTCCTCAGACATTCCCTTCCGTTGCCCAGACTGTAGAGCACACTTTGGACCGATCATTGGGTTGCAGAAGGGCTACGCGCTGGCCAACATCGTGGAGGACTTCAGGGTGAACAGGAGGAGAAGGGAAGAGCAGACAAAAAGTGTGTACTGCGACTGCTGCCTGGAGAACAAAACTCTGGCAATGAAAACATGTCTAAAGTGTGAGGTGTCGCTGTGCAAAGAGCACATCAAGGACCACCTGGAGCTGCCGGTGTACACGGGACACCCCTTGGTCAGGCCTCTGAGTGACCTCCTGGAGAGGAAATGCCCAGAGCACAAGGACGAGGTGCTGAGATACTACTGCAACGCGTCCAGGCGCTACATCTGCAACGTGTGCGCCCTGGAGAGCAAGCAGCACAACCTGGCCACTGAGGCCTCCTCTGTCCTGCGGAGACAGCTGACTGAGTACATGGATCAACGCTTCAACATGCTCAAGGAGCAATCCAGTGAGTCTGTAAAAAAACTGCAAGAAGACATTCAACGTGAGAAACAGAAAGTGAACCCTGCCGACTCCTCCCTCAACAGTGTCACAGTGGTGCTGCTCTGTTTGTGGTTCATTGTTCTGTATTACGCCTACAACTACTCTGTGGAAAACCAGATGCTAACAGAAGCGCTGGACAAGCAGCAGAACCGCGTGCATCACATTTATTCCACCATCGCAGAACTCTTGGTTCATCATCCAATGAAGAGCCACATACCTCCAGAGACCGAAGATCAAGGATTTCTCATGTTGGATCTGAACACAGCCAGTCCTTTCCTTGGGGTCTCCGCTGACCTCCAAACAGCAGAGAGAATGAAAACCAAGCTGGACTATCCCAACAGTAATAGCCCCGCAGGTCCTCTGCCCGGTGCTTCTCCGCTGGTAACCACGTCTGGGAGGTGGAGGCTGAGGGATACTGGAACATCGCCGTGTCATACAAGAGCATCCAATGTAAGAGCAAGGACTGCTATGGACGCAGTTCTGATCATAGATTTTGTAGAaccatttttttaatcaataaaatcatttttaaatcaa
>XM_039816687.1
GTGTAATGTTGCCATGGAGCGATCCTGATCCATCAGCGGGAGTTACGCTTATATAGCTACTGTCTATGGAGTTACGCATATATGTCAATGGAGTTACGGTAGTCAGTCATGTCAATGTAGTCAGTTAGCTcgattgacatatatataaggttAGCTCTGGGTTACAGGAAAAGATGACAGAATACGTTGATTGATGATTGATACAGAGGCATCAAGAATGGAAGATACCGAGAAAACAAAGCTTGAGGAGTTGCTGATGTGCCCAGTGTGCCAGGACATCTTTAAGGATCCTCGGCAGCTGCCCTGTGGACACAGCATGTGTATGGGCTGTCTGGAAAACATGATGGATCACTCCTCAGACATTCCCTTCCGTTGCCCAGACTGTAGAGCACACTTTGGACCGATCATTGGGTTGCAGAAGGGCTACGCGCTGGCCAACATCGTGGAGGACTTCAGGGTGAACAGGAGGAGAAGGGAAGAGCAGACAAAAAGTGTGTACTGCGACTGCTGCCTGGAGAACAAAACTCTGGCAATGAAAACATGTCTAAAGTGTGAGGTGTCGCTGTGCAAAGAGCACATCAAGGACCACCTGGAGCTGCCGGTGTACACGGGACACCCCTTGGTCAGGCCTCTGAGTGACCTCCTGGAGAGGAAATGCCCAGAGCACAAGGACGAGGTGCTGAGATACTACTGCAACGCGTCCAGGCGCTACATCTGCAACGTGTGCGCCCTGGAGAGCAAGCAGCACAACCTGGCCACTGAGGCCTCCTCTGTCCTGCGGAGACAGCTGACTGAGTACATGGATCAACGCTTCAACATGCTCAAGGAGCAATCCAGTGAGTCTGTAAAAAAACTGCAAGAAGACATTCAACGTGAGAAACAGAAAGTGAACCCTGCCGACTCCTCCCTCAACAGTGTCACAGTGGTGCTGCTCTGTTTGTGGTTCATTGTTCTGTATTACGCCTACAACTACTCTGTGGAAAACCAGATGCTAACAGAAGCGCTGGACAAGCAGCAGAACCGCGTGCATCACATTTATTCCACCATCGCAGAACTCTTGGTTCATCATCCAATGAAGAGCCACATACCTCCAGAGACCGAAGATCAAGGATTTCTCATGTTGGATCTGAACACAGCCAGTCCTTTCCTTGGGGTCTCCGCTGACCTCCAAACAGCAGAGAGAATGAAAACCAAGCTGGACTATCCCAACAGTAATAGCCCCGCAGGTCCTCTGCCCGGTGCTTCTCCGCTGGTAACCACGTCTGGGAGGTGGAGGCTGAGGGATACTGGAACATCGCCGTGTCATACAAGAGCATCCAATGTAAGAGCAAGGACTGCTATGGACGCAGTTCTGATCATAGATTTTGTAGAaccatttttttaatcaataaaatcatttttaaatcaa
>XM_039816688.1
AATCGCTCCTCCTGTTAGGCCCCGCCCTACCAGGAAGTACAAATATAAACTCAGCAGTGCTTTCACTTTAAGCGTTGTGTGTACGGAGGATAAGACAAGCAATACTAAGGGCATCAGCTTTAGCTTTAAAGAAGAGGCATCAAGAATGGAAGATACCGAGAAAACAAAGCTTGAGGAGTTGCTGATGTGCCCAGTGTGCCAGGACATCTTTAAGGATCCTCGGCAGCTGCCCTGTGGACACAGCATGTGTATGGGCTGTCTGGAAAACATGATGGATCACTCCTCAGACATTCCCTTCCGTTGCCCAGACTGTAGAGCACACTTTGGACCGATCATTGGGTTGCAGAAGGGCTACGCGCTGGCCAACATCGTGGAGGACTTCAGGGTGAACAGGAGGAGAAGGGAAGAGCAGACAAAAAGTGTGTACTGCGACTGCTGCCTGGAGAACAAAACTCTGGCAATGAAAACATGTCTAAAGTGTGAGGTGTCGCTGTGCAAAGAGCACATCAAGGACCACCTGGAGCTGCCGGTGTACACGGGACACCCCTTGGTCAGGCCTCTGAGTGACCTCCTGGAGAGGAAATGCCCAGAGCACAAGGACGAGGTGCTGAGATACTACTGCAACGCGTCCAGGCGCTACATCTGCAACGTGTGCGCCCTGGAGAGCAAGCAGCACAACCTGGCCACTGAGGCCTCCTCTGTCCTGCGGAGACAGCTGACTGAGTACATGGATCAACGCTTCAACATGCTCAAGGAGCAATCCAGTGAGTCTGTAAAAAAACTGCAAGAAGACATTCAACGTGAGAAACAGAAAGTGAACCCTGCCGACTCCTCCCTCAACAGTGTCACAGTGGTGCTGCTCTGTTTGTGGTTCATTGTTCTGTATTACGCCTACAACTACTCTGTGGAAAACCAGATGCTAACAGAAGCGCTGGACAAGCAGCAGAACCGCGTGCATCACATTTATTCCACCATCGCAGAACTCTTGGTTCATCATCCAATGAAGAGCCACATACCTCCAGAGACCGAAGATCAAGGATTTCTCATGTTGGATCTGAACACAGCCAGTCCTTTCCTTGGGGTCTCCGCTGACCTCCAAACAGCAGAGAGAATGAAAACCAAGCTGGACTATCCCAACAGTAATAGCCCCGCAGGTCCTCTGCCCGGTGCTTCTCCGCTGGTAACCACGTCTGGGAGGTGGAGGCTGAGGGATACTGGAACATCGCCGTGTCATACAAGAGCATCCAATGTAAGAGCAAGGACTGCTATGGACGCAGTTCTGATCATAGATTTTGTAGAaccatttttttaatcaataaaatcatttttaaatcaa
>XM_039816689.1
GTTAGGCCCCGCCCTACCAGGAAGTACAAATATAAACTCAGCAGTGCTTTCACTTTAAGCGTTGTGTGTACGGAGGATAAGACAAGCAATACTAAGGGCATCAGCTTTAGCTTTAAAGAGGCATCAAGAATGGAAGATACCGAGAAAACAAAGCTTGAGGAGTTGCTGATGTGCCCAGTGTGCCAGGACATCTTTAAGGATCCTCGGCAGCTGCCCTGTGGACACAGCATGTGTATGGGCTGTCTGGAAAACATGATGGATCACTCCTCAGACATTCCCTTCCGTTGCCCAGACTGTAGAGCACACTTTGGACCGATCATTGGGTTGCAGAAGGGCTACGCGCTGGCCAACATCGTGGAGGACTTCAGGGTGAACAGGAGGAGAAGGGAAGAGCAGACAAAAAGTGTGTACTGCGACTGCTGCCTGGAGAACAAAACTCTGGCAATGAAAACATGTCTAAAGTGTGAGGTGTCGCTGTGCAAAGAGCACATCAAGGACCACCTGGAGCTGCCGGTGTACACGGGACACCCCTTGGTCAGGCCTCTGAGTGACCTCCTGGAGAGGAAATGCCCAGAGCACAAGGACGAGGTGCTGAGATACTACTGCAACGCGTCCAGGCGCTACATCTGCAACGTGTGCGCCCTGGAGAGCAAGCAGCACAACCTGGCCACTGAGGCCTCCTCTGTCCTGCGGAGACAGCTGACTGAGTACATGGATCAACGCTTCAACATGCTCAAGGAGCAATCCAGTGAGTCTGTAAAAAAACTGCAAGAAGACATTCAACGTGAGAAACAGAAAGTGAACCCTGCCGACTCCTCCCTCAACAGTGTCACAGTGGTGCTGCTCTGTTTGTGGTTCATTGTTCTGTATTACGCCTACAACTACTCTGTGGAAAACCAGATGCTAACAGAAGCGCTGGACAAGCAGCAGAACCGCGTGCATCACATTTATTCCACCATCGCAGAACTCTTGGTTCATCATCCAATGAAGAGCCACATACCTCCAGAGACCGAAGATCAAGGATTTCTCATGTTGGATCTGAACACAGCCAGTCCTTTCCTTGGGGTCTCCGCTGACCTCCAAACAGCAGAGAGAATGAAAACCAAGCTGGACTATCCCAACAGTAATAGCCCCGCAGGTCCTCTGCCCGGTGCTTCTCCGCTGGTAACCACGTCTGGGAGGTGGAGGCTGAGGGATACTGGAACATCGCCGTGTCATACAAGAGCATCCAATGTAAGAGCAAGGACTGCTATGGACGCAGTTCTGATCATAGATTTTGTAGAaccatttttttaatcaataaaatcatttttaaatcaa
>XR_005640810.1
GTGTAATGTTGCCATGGAGCGATCCTGATCCATCAGCGGGAGTTACGCTTATATAGCTACTGTCTATGGAGTTACGCATATATGTCAATGGAGTTACGGTAGTCAGTCATGTCAATGTAGTCAGTTAGCTcgattgacatatatataaggttAGCTCTGGGTTACAGGAAAAGATGACAGAATACGTTGATTGATGATTGATACAGAAGAGGCATCAAGAATGGAAGATACCGAGAAAACAAAGCTTGAGGAGTTGCTGATGTGCCCAGTGTGCCAGGACATCTTTAAGGATCCTCGGCAGCTGCCCTGTGGACACAGCATGTGTATGGGCTGTCTGGAAAACATGATGGATCACTCCTCAGACATTCCCTTCCGTTGCCCAGACTGTAGAGCACACTTTGGACCGATCATTGGGTTGCAGAAGGGCTACGCGCTGGCCAACATCGTGGAGGACTTCAGGGTGAACAGGAGGAGAAGGGAAGAGCAGACAAAAAGTGTGTACTGCGACTGCTGCCTGGAGAACAAAACTCTGGCAATGAAAACATGTCTAAAGTGTGAGGTGTCGCTGTGCAAAGAGCACATCAAGGACCACCTGGAGCTGCCGGTGTACACGGGACACCCCTTGGTCAGGCCTCTGAGTGACCTCCTGGAGAGGAAATGCCCAGAGCACAAGGACGAGGTGCTGAGATACTACTGCAACGCGTCCAGGCGCTACATCTGCAACGTGTGCGCCCTGGAGAGCAAGCAGCACAACCTGGCCACTGAGGCCTCCTCTGTCCTGCGGAGACAGCTGACTGAGTACATGGATCAACGCTTCAACATGCTCAAGGAGCAATCCAGTGAGTCTGTAAAAAAACTGCAAGAAGACATTCAACGTGAGAAACAGAAAGTGAACCCTGCCGACTCCTCCCTCAACAGTGTCACAGTGGTGCTGCTCTGTTTGTGGTTCATTGTTCTGTATTACGCCTACAACTACTCTGTGGAAAACCAGATGCTAACAGAAGCGCTGGACAAGCAGCAGAACCGCGTGCATCACATTTATTCCACCATCGCAGAACTCTTGGTTCATCATCCAATGAAGAGCCACATACCTCCAGAGACCGAAGATCAAGAATGATGTATGTGTGAAAGTACAGTAAAACCGTACATGTGTCAGTAATGACGGTTGTGATAAGGCAGGCTTGTAGAAAGGATTTCTCATGTTGGATCTGAACACAGCCAGTCCTTTCCTTGGGGTCTCCGCTGACCTCCAAACAGCAGAGAGAATGAAAACCAAGCTGGACTATCCCAACAGTAATAGCCCCGCAGGTCCTCTGCCCGGTG

Function

NR:

description
PREDICTED: E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816686.1 True 1411 mRNA 0.49 8 12760748 12768625
XM_039816687.1 False 1408 mRNA 0.49 8 12760748 12768625
XM_039816688.1 False 1336 mRNA 0.50 8 12760748 12767557
XM_039816689.1 False 1320 mRNA 0.50 8 12760748 12767544
XR_005640810.1 False 1323 transcript 0.50 9 12760915 12768625

Neighbor

gene id symbol gene type direction distance location
sall2 LOC104956582,LOC103360303 coding downstream 45002 12706174 ~ 12715746 (-)
mmp14b LOC103360306,LOC103396588 coding downstream 55985 12691995 ~ 12704763 (-)
c11h14orf119 LOC104956585 coding downstream 96047 12663195 ~ 12664701 (-)
dhrs1 dhrs1 coding downstream 133416 12622745 ~ 12627332 (-)
homeza homez coding downstream 139039 12616620 ~ 12621709 (-)
si:rp71-1g18.1 NA coding upstream 744 12769369 ~ 12774763 (-)
casq1a LOC104956576 coding upstream 9715 12778340 ~ 12786678 (-)
LOC120568729 LOC104956573,LOC103360293 coding upstream 33281 12801906 ~ 12803940 (-)
LOC120567650 LOC100690777,LOC102314387,LOC101469034,LOC102212652 coding upstream 70958 12839583 ~ 12844436 (-)
hhatla hhatl,LOC108238572,LOC103360290,LOC106926958 coding upstream 77503 12846128 ~ 12854319 (-)
G113933 NA non-coding downstream 1475 12757651 ~ 12759273 (-)
LOC120568043 NA non-coding downstream 160156 12585529 ~ 12600592 (-)
G113828 NA non-coding downstream 403857 12356334 ~ 12356891 (-)
G113810 NA non-coding downstream 404667 12353843 ~ 12356081 (-)
G113806 NA non-coding downstream 531410 12228979 ~ 12229338 (-)
G113945 NA non-coding upstream 21214 12789839 ~ 12793027 (-)
G114129 col6a1,col6a2 non-coding upstream 184755 12953380 ~ 13167706 (-)
LOC120567923 NA non-coding upstream 254645 13023270 ~ 13039958 (-)
G114131 NA non-coding upstream 312989 13081614 ~ 13084384 (-)
G114153 LOC105007837 non-coding upstream 320061 13088686 ~ 13091316 (-)
nedd8l LOC104931181,LOC104949953,LOC107384241,LOC103360313 other downstream 152179 12601180 ~ 12608569 (-)
G113805 NA other downstream 542481 12218062 ~ 12218267 (-)
LOC120567758 NA other downstream 1871796 10887007 ~ 10888952 (-)
brinp2 brinp2,LOC103369811 other downstream 2493670 10040686 ~ 10267078 (-)
LOC120568397 NA other downstream 3250251 9400787 ~ 9510497 (-)
LOC120568578 wdr48 other upstream 197841 12966466 ~ 12975328 (-)
G114152 NA other upstream 315936 13084561 ~ 13088563 (-)
dis3l2 dis3l2 other upstream 700906 13469531 ~ 13482225 (-)
tfr1a NA other upstream 1181246 13949871 ~ 13968811 (-)
LOC120568687 NA other upstream 1844988 14613613 ~ 14618224 (-)

Expression


Co-expression Network