LOC120568935 (tsc22d2,LOC104947426,LOC101076449,LOC102205509,LOC107559349)


Basic Information

Item Value
gene id LOC120568935
gene name tsc22d2,LOC104947426,LOC101076449,LOC102205509,LOC107559349
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 15170892 ~ 15194493 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816690.1
CGCACACTACCTACCCACGATGCAGCGCGGTTGCATACAACATAGCCATCTTGTCAAGAGTAACTGAGTGAGGGAGGTAACTGTTGGCGCTGTTTAGATTCTCATTTGTGTTAAAGCGTAAACAATTAAGAGCATTTTCTCTCTCGACCGCCGTTAGCTTCAAAGTAAGTGTCGCCCCCGAATGACTTTAAGCTGGTGCGGTGAGTGGATACAAAGGACTGCTTTCTGGAAGATGTCTCGCATACTTGTTCCGACGTAGGGGGAGTGTGCAGCAGCCAGTTGGCTTGACTTGCTAGCTAGCTCGGTGAGTGGAGGGCTGTGGGCCCTCCTCAGCCTAAAGTAGGTCCTGCAGCTGGGCAACACACTCTGCGACAACGGCCGTTTGGCAACTGCACAACCGCGACATTAGCAGGCCGGTCCGGACTGACAGAAAGCTCCGGATCAATCATCCTACGGGCTGCTGCTGGTATCTAAAGCCGCATTGCTGGACAAGACGACACGAAGTGTGGCGTTGCGTTATGAGCTCATGAAACGCAACAGGAGAtcgagagagaggaagagggatggCGTATATTCATCTTGATTACAGTTAGCTAGGCTAAGTAAAATCTATATGTAATCGTCCTGTTTAGTATGATTTAAGCTTTAAGAAGCCGCAACCAGCTCGTTTCTTTCTGACGGAGGATTAACATAGCCACACGGGACTTGGAATCAGGCTGTCAATATGTCGAAAATGCCGGCCAAGAAAAAGAGCTGTTTTCAGATCACAAGTGTGACTCAGGCCCAGGTGGCGGGTATAGGTGCCGCCGACGACACTGAGAGTCTGGACGACCCAGACGAGTCACGGACTGAAGATGTGTCGTCAGAGATTTACGACATGTCACGGGCTGAGTACGAGCCTGCATGTGACATTAGTTCATCTGAAGAAGCCCTGAATAATGTTGGAGAGCCAGAGGCAATCGGTGTTATGGCGCCATCACACATACCTCAAGCCGGTCAGTTGTCTGCCATGTCAGGCAATATCATGGGGGAGTTTCGGAAGGTGGGAGTGTCGGGCTCAACTCAAGGTGGTCAGCAGCCTCCGGGGCACGGCGCTACAACTGGTGTATCCCTCATCGCTCAGCCTGGGGCAATGCAGCAACAGCCTGCTCCAGCAGCCAGCGCTGGGCCAGCCAGCGGTCCAGTAAACTCATCCCAACCTGCTGCAGTGACCAGTTCAGCTCCTCCTCCTGCCACCTCCACGGTGAGTTGCACTTCACGCTTCAGGGTCATTAAACTCGATCATGGTACTGGAGAACCTTTTCGACGAGGCAGGTGGACGTGTACGGAGTTTTATGAGAAAGACTCTGAGGGCTCTGCTGTTAGTAGAACTGGGGATAGCATTAGGCATGCCAGTGCAACAACACTGGACCCTGCTGCAGACAGAGACAGTGGGCTCGGGCATACAGGAGGATCTGTGGTTGCCCCGGCAACACACTCAGGTCAGGGCTTGGGCTCTGTGGCGGATgcttctctctcttcatcccgCATGCATTTGGTGGAGATGCCACCGCAGCAGCAACAGATCCACCATCCAAACTACAGCGCCACACAGAGTGTTTTCTCCAGCAGCAAGCCAACAGTGGGAGGTCTCCAGCCTTCTGCTCCCCAGAGCGTGCTGCCTCTCGGACAAAACGGCCTGCCTCAATCTGTTGTCCACATACAAAAGTCCCCCATCATGCCTCTTTCAGCTCAGCCCATCGCTTACCCTCCCCTGCAACAGCAGGTTCCTATAGGCCACCAGCTGACCAGCGTGTCTTCTGGATTGCTACAGAACCAGACAGAGTACTATCAGCAGCAACAGCCCACTTCCATGCAGCCAGGGATATCCACTGGCCAGTCCCTTCCAGCGTCCAACCTCTCAGCAGGGCCACAGCCTGTGGGACAAGGACACACTTCGGTCTTGCCTCCAGCCTCTGGAGGGGCTTCTGTGCCAAGTCAGGTTGGAGATGTtgcaggagcaggaggagggtcTGTACCTACCGGACAGCCAGCTCCAGGCCTCTTGCAGCAGCAGACCGGAGGAATGGGAGGTGTCGGAGGCTCCATACTGGTTGGTGGATCTGCTTTGCATCAGCAGGCTGTGAGTCAGTATACAGCCACTGGACAGCCTCAACCCCACGGCCTCCACTCTACATCCTCCGGTGTACAAAATGTGCCTGCCGTCACAGTGAGCACCACTGTGCACACTCCTGTGCCCAGTGCCTCCAGTGCAGCCATGCCAAATGTGACAACCTCCAGTTTGCCTCCAGGTCAGATACCCCACAGCAGGACTCTAGTGGCTTTGGGGGTGCAGGGCCTCCCAGCTACTGGATTTGGACATGCAGAGGGTGGTGTTGGAGGGAAGTCAGAGGGCCTCGTCAATGCACAGTCTCCTGTTGTCTCTGGGAAGGAACCAGTGAAGTCCCTCATGCCTGAGAGCCTGCAGCTCGCCACTCCGACTGTCAACAGCCTGTTTGGAATCCACATACCTGATGACGGGGATGTGGACAGgACCTCGGGAACCAATGTTGCTGCCATTGATAATAAAATTGAACAGGCAATGGACCTAGTGAAAAGCCATCTGATGTATGCGGTGCGTGAAGAGGTGGAGGTCTTAAAGGAGCAGATCAAGGAGCTGTTTGAGAGGAACTCTGTGCTGGAGAGGGAGAACGCCGTGTTGAAATCGCTGGCCAACAGCGAGCAGCTGTCCCAGCTGCCCGCCCAGTCGGCCACCAGCTCCGGCACCACGCCCCCCCAGCAAGGACTCATCCAGCCTCCGCAACAGGCCCAGCCTCCGCTTCAAGTTCAGCCTCAGCCGCAGTCACACGGCCAGCTCCAGCACCACCCCAAACCCCAGCAGCTCCAGACTCAGCTCGATCCTGGCCAACAACAAATGCAACCCAACGTCACCTCCGCTTGAAGTGCATCAGCCATGCTTCGCAtagtgcaggaaaaaaaaagaaaagcatctTCTCTACAACTTATTACAGTTAgtttatgtgaaattaaaacgaagaaaaaaaaccttttgtCTTCTTAGCCACCAGCTTGACCACaaagtacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagaattgaTGTTGgaatgtgagtgtgtatgcATCTGTACTGTGGGCCTTTCCAGTGTTAATGCAATCatcgagagacagagagacttgGACAGAGAAAGTGTGTAGAGACAGAGTATCGGGGAAGGTCGGGGTGTTTGTTTTCATCTTGGCAATGTTCCCGGAGTGGTCGACTGCTGGGTCCAAGCTCATGGACAGGATGTTCTTCTCTTGGACCAGGCCCAAGCCAGACCGGTTGCGACCTGACCTGAAACCTCAAACCGTTGGTGTTGGAAAGGGAGGGCTTCACCCCCACATAAGGGACAAAAGGGCGTGATTGTCAGAACAgagtgattatttttttaaatgagataatTGAGTGGGTAAAGGGGTATTTTTAGCATTGCTGTTTCATGTTGTAAAGTAAGAAGTGAGAGAGTTTTCCGGAGCGCCACACCGCTGCCGTTACTTTTACATCAAATCCAACCCTTGCATCAGTCTTTTGAGTTCTACTgttaagtgttttatttattacaggGCTGCTATTCTCATAAATGAACAATTTCACAAAACCGGTTTAACAGTACCCCCGGTGACTTGTTTCCTCTTCTACAGTGTTTCAACAGATTGGCCATACTTCCCAATGCTTTAATTGTTAAAAGGGTAggtgaaaaagaaaatctgacaaATGTTTAACACTAACTAAAATTTTACGCTGCAATTGCCAATTCATAGCTCAAGTCAAGGTCCAGTATGAATGTACATTTGTGTATAGTATAAAGTATTAAGAGCCTTAATGGGTGACTCTTCGCCTGTTTACATCAAATCTTAACGAGAGCCTGCAGAAGGTATTTGATGAAGATTCAATTCTGTTGGTAGTTATATCTAAAAGTGAATTAGTATTGCCATCAACCCCCCCtccatgtttttttctccaaatgtctttcctgagggggggaggggggggaagcTGTGAAATCATTCAACATACTTTGTAACCAAAGATGCAAAGCTGTGTAAATTGATTTTTAAATGCACACATGTATTtctttcatgtatttttttttcttttgttacttcctccttcacaaaatattttgttgCTGTTCAGCATGTTCTGCATGATCTGTAATCTTCAAACCACTTTCTTACCTCATTTTTATTCAGCACTCTTATTGTAAGATAGTCTGTGAACAGTGTaaatgggggggaggggggatgaTGTGGAGCAGAGAGGAAAAATAATCTAGTGTTACAGACACTAGTCCCAGAAAAATGAAGTGAGCCatgttttgttcatttaaatGGTGTTTGAATTTCATATGCCAATAGTTTTGTTACATTGCaaattttaatgtatttaaataaaagCAATACTCAGATTCCGAAA
>XM_039816692.1
TTGCGCACACTACCTACCCACGATGCAGCGCGGTTGCATACAACATAGCCATCTTGTCAAGAGTAACTGAGTGAGGGAGGTAACTGTTGGCGCTGTTTAGATTCTCATTTGTGTTAAAGCGTAAACAATTAAGAGCATTTTCTCTCTCGACCGCCGTTAGCTTCAAAGTAAGTGTCGCCCCCGAATGACTTTAAGCTGGTGCGGTGAGTGGATACAAAGGACTGCTTTCTGGAAGATGTCTCGCATACTTGTTCCGACGTAGGGGGAGTGTGCAGCAGCCAGTTGGCTTGACTTGCTAGCTAGCTCGGTGAGTGGAGGGCTGTGGGCCCTCCTCAGCCTAAAGTAGGTCCTGCAGCTGGGCAACACACTCTGCGACAACGGCCGTTTGGCAACTGCACAACCGCGACATTAGCAGGCCGGTCCGGACTGACAGAAAGCTCCGGATCAATCATCCTACGGGCTGCTGCTGGTATCTAAAGCCGCATTGCTGGACAAGACGACACGAAGTGTGGCGTTGCGTTATGAGCTCATGAAACGCAACAGGAGAtcgagagagaggaagagggatggCGTATATTCATCTTGATTACAGTTAGCTAGGCTAAGTAAAATCTATATGTAATCGTCCTGTTTAGTATGATTTAAGCTTTAAGAAGCCGCAACCAGCTCGTTTCTTTCTGACGGAGGATTAACATAGCCACACGGGACTTGGAATCAGGCTGTCAATATGTCGAAAATGCCGGCCAAGAAAAAGAGCTGTTTTCAGATCACAAGTGTGACTCAGGCCCAGGTGGCGGGTATAGGTGCCGCCGACGACACTGAGAGTCTGGACGACCCAGACGAGTCACGGACTGAAGATGTGTCGTCAGAGATTTACGACATGTCACGGGCTGAGTACGAGCCTGCATGTGACATTAGTTCATCTGAAGAAGCCCTGAATAATGTTGGAGAGCCAGAGGCAATCGGTGTTATGGCGCCATCACACATACCTCAAGCCGGTCAGTTGTCTGCCATGTCAGGCAATATCATGGGGGAGTTTCGGAAGGTGGGAGTGTCGGGCTCAACTCAAGGTGGTCAGCAGCCTCCGGGGCACGGCGCTACAACTGGTGTATCCCTCATCGCTCAGCCTGGGGCAATGCAGCAACAGCCTGCTCCAGCAGCCAGCGCTGGGCCAGCCAGCGGTCCAGTAAACTCATCCCAACCTGCTGCAGTGACCAGTTCAGCTCCTCCTCCTGCCACCTCCACGGTGAGTTGCACTTCACGCTTCAGGGTCATTAAACTCGATCATGGTACTGGAGAACCTTTTCGACGAGGCAGGTGGACGTGTACGGAGTTTTATGAGAAAGACTCTGAGGGCTCTGCTGTTAGTAGAACTGGGGATAGCATTAGGCATGCCAGTGCAACAACACTGGACCCTGCTGCAGACAGAGACAGTGGGCTCGGGCATACAGGAGGATCTGTGGTTGCCCCGGCAACACACTCAGGTCAGGGCTTGGGCTCTGTGGCGGATgcttctctctcttcatcccgCATGCATTTGGTGGAGATGCCACCGCAGCAGCAACAGATCCACCATCCAAACTACAGCGCCACACAGAGTGTTTTCTCCAGCAGCAAGCCAACAGTGGGAGGTCTCCAGCCTTCTGCTCCCCAGAGCGTGCTGCCTCTCGGACAAAACGGCCTGCCTCAATCTGTTGTCCACATACAAAAGTCCCCCATCATGCCTCTTTCAGCTCAGCCCATCGCTTACCCTCCCCTGCAACAGCAGGTTCCTATAGGCCACCAGCTGACCAGCGTGTCTTCTGGATTGCTACAGAACCAGACAGAGTACTATCAGCAGCAACAGCCCACTTCCATGCAGCCAGGGATATCCACTGGCCAGTCCCTTCCAGCGTCCAACCTCTCAGCAGGGCCACAGCCTGTGGGACAAGGACACACTTCGGTCTTGCCTCCAGCCTCTGGAGGGGCTTCTGTGCCAAGTCAGGTTGGAGATGTtgcaggagcaggaggagggtcTGTACCTACCGGACAGCCAGCTCCAGGCCTCTTGCAGCAGCAGACCGGAGGAATGGGAGGTGTCGGAGGCTCCATACTGGTTGGTGGATCTGCTTTGCATCAGCAGGCTGTGAGTCAGTATACAGCCACTGGACAGCCTCAACCCCACGGCCTCCACTCTACATCCTCCGGTGTACAAAATGTGCCTGCCGTCACAGTGAGCACCACTGTGCACACTCCTGTGCCCAGTGCCTCCAGTGCAGCCATGCCAAATGTGACAACCTCCAGTTTGCCTCCAGGTCAGATACCCCACAGCAGGACTCTAGTGGCTTTGGGGGTGCAGGGCCTCCCAGCTACTGGATTTGGACATGCAGAGGGTGGTGTTGGAGGGAAGTCAGAGGGCCTCGTCAATGCACAGTCTCCTGTTGTCTCTGGGAAGGAACCAGTGAAGTCCCTCATGCCTGAGAGCCTGCAGCTCGCCACTCCGACTGTCAACAGCCTGTTTGGAATCCACATACCTGATGACGGGGATGTGGACAGCTATCGCCCTCCAGGACAATGTCTGAGGTGATGGCCTTGGCtgcaaacataaaaatgtattgcCAGTTGCCACTGTGTAGAGAGTTTCTATTAGCCTCAGGCTACTCCTGGCCTCTTGCTAAATGTGCTGCATGACTGACCTTTTAATAAGTTAGTTGCTGCTCCGGAAAAGACTGTCTAATACAAACCTAGTGAAGTATGTTTGATTTTGTGTTGCCACGTTTATGATATCATGGTTTCCACTCAAAACCCCATCGGGCTCTCCTTGAGAATGTTTACAGGGGATTTTACAGTGTTGTCTAAAATCACTGTTTTAGCTTTGTACTGTAGATATTATGTTGCTGAATGATCCTTTAGGTTGCGCAGACAGTTGTGTATGTCACACTGAATCTAAAAATGTGTACAGATAAATATAACCCACAGCATCATGGTAGAGAGGTTGAAGAATTGAAATGTGGCATTACTCTTATGGGATGATTAAGTTAGTATGTCACATGGTAAGTCGCAAAATATGACTACATTTGTGTAGTCATTATTATTTATGAGTTATTACACTTTCCAAAAGTAATCTTTCTCTTAATTTCTGAGTTTTAGCGCTTCGTTTCACTTGTAGTACATGGCACACATGAGCGCAAAATTATAAAGTGCCTGAAATCTCTGTGGTTTCCATTTACAGTCGTACAGATATAGCAGAATGCAGACCAGACAGGGTATGCAGAATGCAGAACACATGGGCGGACAATTtcctaaacatttttttttgaagtTAGTATTTTGAGTATGCCGTGCACTTGGGGAAGTTTACACTTATCTCTGATCacaactttcttttcttttctgagCCATCGACCAACCAAACCTCAATTGTTAAGTGGCTTTACACAATTTTGTTACTCCTATTGTTATTCTTTGTCTGTCTTCGAGTGATTATCATCCTCAAATTTTAGAACTACAGTTTGCATAATGCTTTGGTGGATATAAACAGGCAGTATAATGGTGGCATGGATTCAGTAAGTTACAGCGTAACAGCAACTTGAGcaccatttttgttttttagcctatatttctttacattttgCCAAATTGGCACCAATACAAGTATGTTGCATTAGCTATTAGCAGGTCCTGTTTGCAGTGTACCCCTGGATACAGACAACTATCACTGGATAACTTTTTGACGCCAAAGAgtaatttaaaaatgtgatgATTTTGAAGCGAGTTCTGGACTTATATGAGCATCTTTTTTCTCTAATTTTAAACCGATTTGTGGACATTGTttgcaaaggctcatgggagATAATCCTATCAAGTTTAAATCACACTGAATCTAAAAATaagtgtgtcgtgtgtgtgttcatattcAAATACAGTGACTAAAAACCTGTTGTTTTTAGAACACAAGCAGCTGTCTCTTTCACCTCACACAGTATCTTTGCCtcatgtctctccctccctgcccACCCTTAAACTCTCCTCCCTCACAGTTAGAATGTTTTTGGTTTAGACTATGGGATAGTAAgttaatttaaactttttttttttttaaatccacatgCTCCCCTCATGATCTCTTGGTTGATTTGTAAACCGGCAAACTTGCATTAGATATTTTTCTATGCCAGTTATGCCATCTAAAACATTTAGGTTTGTGACAATGCAACTGACTTCAGACAGTGTGTTTTTGGTGTACCTATGTATTGCCTGTGAGAGGACCCAGCTCCCAGGCTGATAAGAGCAGGAGCCTCTTACGACAGCTAAGCCCTATCAGACATTGAGCAGTAGTCTTTCCACTGTGCCCCTATTCTGCCGATAAGAGACCTGACAGTGGGGAGTGTCAACCAACTTTGCTTGTTGTCACGTTGTGGCCCTCTTCTTTTGAAATACAGTGTGTGCTAAAGTACTGTATGTTCTGTTTAGGGCTTTTTGGACGTGGTTAAACCCACAAACACTCCCCCCTGTAATAGCTGTGGGCATGTTGAACCAGACACTCAGAGCCaagctagttttt

Function

symbol description
tsc22d2 Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Is expressed in paraxial mesoderm; presumptive segmental plate; and somite. Orthologous to human TSC22D2 (TSC22 domain family member 2).

NR:

description
PREDICTED: TSC22 domain family protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816690.1 True 4582 mRNA 0.50 3 15170895 15194493
XM_039816692.1 False 4543 mRNA 0.48 2 15170892 15175944

Neighbor

gene id symbol gene type direction distance location
LOC120568090 NA coding upstream 19463 15148736 ~ 15151429 (+)
LOC120568088 NA coding upstream 32870 15128822 ~ 15138022 (+)
LOC120568427 NA coding upstream 59462 15097577 ~ 15111430 (+)
LOC120568425 NA coding upstream 77493 15089419 ~ 15093399 (+)
LOC120568423 NA coding upstream 82863 15070483 ~ 15088029 (+)
LOC120568936 LOC103360008,LOC104955558 coding downstream 4809 15199302 ~ 15205673 (+)
ephb3a LOC103359932,LOC100706883,LOC101473098 coding downstream 38389 15232882 ~ 15266224 (+)
LOC120568590 NA coding downstream 108933 15303426 ~ 15310540 (+)
b3gnt5b b3gnt5,LOC103359375 coding downstream 181320 15375813 ~ 15382330 (+)
dcun1d1 dcun1d1,LOC104947222,LOC107568628,LOC103396145 coding downstream 223771 15418264 ~ 15421158 (+)
G114747 LOC105904583 non-coding upstream 102441 15068149 ~ 15068451 (+)
G114746 NA non-coding upstream 104453 15066123 ~ 15066439 (+)
G114745 NA non-coding upstream 105499 15065090 ~ 15065393 (+)
G114650 NA non-coding upstream 358683 14811662 ~ 14812209 (+)
G114585 NA non-coding upstream 476990 14693566 ~ 14693902 (+)
G114889 setd9,LOC102796737 non-coding downstream 222239 15416732 ~ 15418048 (+)
G114904 NA non-coding downstream 238178 15432671 ~ 15432944 (+)
G114905 NA non-coding downstream 241611 15436104 ~ 15437753 (+)
G114909 ripk2 non-coding downstream 249985 15444478 ~ 15455375 (+)
G114944 NA non-coding downstream 354636 15549129 ~ 15549920 (+)
G114789 NA other upstream 13693 15151796 ~ 15157199 (+)
ro60 trove2 other upstream 144684 15013743 ~ 15026208 (+)
rgs18 rgs18,LOC106918816,LOC103139989,LOC103479038 other upstream 177809 14985777 ~ 14993083 (+)
LOC120568245 LOC103365337,LOC101481118,LOC102206401,LOC102290843 other upstream 874899 14287150 ~ 14295993 (+)
si:ch73-71c20.5 NA other upstream 1984528 13183284 ~ 13186364 (+)
LOC120568540 LOC108238308,LOC100706341,LOC103359463,LOC106530177,LOC102798013,LOC101474556,LOC102303803 other downstream 144064 15338557 ~ 15368780 (+)
asip2b agrp2,LOC105941385,LOC102299529,LOC102795060,LOC103358555 other downstream 278209 15472702 ~ 15478462 (+)
zgc:153115 klf13,LOC104948390,LOC103358333,LOC101073550,LOC105030379,LOC106568757,LOC107752329 other downstream 326289 15520782 ~ 15528769 (+)
slc35a3b LOC103357859,LOC104957008,LOC101481522,LOC102792347 other downstream 359978 15554471 ~ 15568494 (+)
st6galnac3 st6galnac3 other downstream 570190 15764683 ~ 15843094 (+)

Expression


Co-expression Network