LOC120568936 (LOC103360008,LOC104955558)


Basic Information

Item Value
gene id LOC120568936
gene name LOC103360008,LOC104955558
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 15199302 ~ 15205673 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816693.1
AACACCACCAGCGTGCTGGCTATGCGTGCTGGCTGCTTCTCGTAACTGGACTGCTAAACGAATAGCTACTTTGTCTGCCGTTTCTTTTGGTTAGCTTTAAATTACCTTTGCCAGAACTACTTCAGGTTTTATTCATGGCATGTTGCTCTGTCTTTGGAGAAGGCGACTCTTAGGCTTTGTTGCCCACAGTAATCATAGACCCACTTCAGCATTCTCCTCCCCGAGCAAGTCATTCACCAGTCAAACCATCATGTCAGACAAAAAACGCAAATCAACATCTTCAGCTGCTGCTGGTAAAGAGCCCAGTGCTAAGCAGCAGAAGTTGGCCCACAcgaaggagaagaaggagaatgAGAGAGCTGAGGGCTGGCTGCAGGACCTTGTGAAGcagcagaggacagagaagaagGAAATGAAATTCAACAAAAAGCGCCTCCGCTTTATGTCTGATACTGAGCAGGCAAAGCAGGGCTCAGAGGGTGTACTGTACTGGATGTTAAGAGACCACAGAGTACAAGATAATTGGGCGCTGGTCCAGGCCCAGCGGCTTGCTTTGGAGGAGAACCTTCCTCTGCACATCTGTGTCTGCCTGGTTGTCCCAAAATCAGAACTGTCTACTCTGAGACATTACAGCTTTATGCTAAAAGGTCTGAAAGAAGTTGCAAAGGAATGCAAAACCTTAGGCATCCAGTTCCACTTGCTGCATGGTTCGGCAGGCGACGTTCTCCCTGGCTTTGTGTCTGACTGCGGCCTGGGGGCAGTGGTGACAGACTTCTCCCCCCTCAGAGAGCCACTGCAGTGGTTGGAGGATGTTAAAAAGACTCTTCCAAAGGACATTCCCCTCATACAGGTTGATGCCCACAATATTGTTCCGTGCTGGGTAGCATCACCTAAACTTGAGTACGCCGCCAGGACGATCAGAGGAAAAATCACTAAGCTTTTGCCAGAGTTCCTCACAGAGTTTCCTCTGGTAGAGAAACACCCATACACAGCTACTAGAACAGCCAAACCAGTAGACTGGGACAAAATCCTGGCCTCCCTGCAGGTTGACCGAGCAGTTGGAGAGCCGGAGTGGGCAAAGCCAGGCACCAGTGGAGGGATGGCCATGTTGGAGTCCTTCATTGATGTACGCCTTAAACTGTTTGACACCCAACGCAATGacccaaacgctgctgccctcAGCCAGTTGTCCCCCTGGATCCGCTTTGGCCACCTGTCAGCCCAACGTGTGGCACTGCAGGTTCAGCACAGTGGGAAGTCTGCAGGACATTCTGTCTCCTCCTTCATTGAGGAGCTGGTGGTGCGCAGGGAGCTGACCGACAACTTTTGCTTCTACAACAAGAAATACGACTGCGTGGAGGgtgcgTATGAGTGGGCTCAGAAGACCTTGAAAGATCATGCCAAAGACAAGAGGCCGTATCTCTACACGCGTGAACAGCTGGAGAAAGCAAAGACACATGACAAGCTCTGGAACGCTGCTCAGTACCAGATGGTCACTGAGGGGAAGATGCATGGTTTCTTGAGGATGTACTGGGCCAAAAAGATTCTGGAGTGGACTTCTTCACCTGAGGAGGCGCTCTCAATCGCTCTATACCTAAATGATCGCTATGAGCTGGATGGCCAGGACCCCAATGGCTTTGTTGGTTGTATGTGGTCTATTTGTGGCATCCATGATCAGggctggaaagagagagacgtTTTCGGGAAGATTCGCTACATGAACTACAAAGGCTGCCTGCGGAAGTTTGACGTAGCCCGGTTTGAGAGAAAGTACTGTCCCAAAAACCTTTGAAGCGTAAAATGTTTTGAAGGATGGGAATAAAATGTCTGGCAGCCTATATCCTAGATCTTTACCTCAGGGGGCATTTATAAGCCTTTCTTGCAGAGGATGTTTTGTTCttcactgacttttttttttttttttagttcttttttttaaacattgggCAGATTCTTTTACtgaatattcagacattcataaTTTAACATTAGATTACCACAGTGCCAACTTAATAAGCATAAAAGCTTTTATgctacttttttattactttttttttattttttaaatgtttattaaattgtattttCCACAAAAGATGCCTTGTTTATCATAAATGTTTGAACAACTGATTCCAcaacaccagaggcctgtactacgaagcaagatttggcgttaacgaggtaacttcaggttcaacccagggttttgtgtaccacgacggtggatcacctgttaccgggttc
>XM_039816694.1
CACCAGCGTGCTGGCTATGCGTGCTGGCTGCTTCTCGTAACTGGACTGCTAAACGAATAGCTACTTTGTCTGCCGTTTCTTTTGGTTAGCTTTAAATTACCTTTGCCAGAACTACTTCAGGTTTTATTCATGGCATGTTGCTCTGTCTTTGGAGAAGACGAAGAGTTGAGGCTTTCCACAATTTTCACTGTGGTTTAGGCAACTTGCAGCTCATCTTTCTCCTCTGCACCAAGGCGACTCTTAGGCTTTGTTGCCCACAGTAATCATAGACCCACTTCAGCATTCTCCTCCCCGAGCAAGTCATTCACCAGTCAAACCATCATGTCAGACAAAAAACGCAAATCAACATCTTCAGCTGCTGCTGGTAAAGAGCCCAGTGCTAAGCAGCAGAAGTTGGCCCACAcgaaggagaagaaggagaatgAGAGAGCTGAGGGCTGGCTGCAGGACCTTGTGAAGcagcagaggacagagaagaagGAAATGAAATTCAACAAAAAGCGCCTCCGCTTTATGTCTGATACTGAGCAGGCAAAGCAGGGCTCAGAGGGTGTACTGTACTGGATGTTAAGAGACCACAGAGTACAAGATAATTGGGCGCTGGTCCAGGCCCAGCGGCTTGCTTTGGAGGAGAACCTTCCTCTGCACATCTGTGTCTGCCTGGTTGTCCCAAAATCAGAACTGTCTACTCTGAGACATTACAGCTTTATGCTAAAAGGTCTGAAAGAAGTTGCAAAGGAATGCAAAACCTTAGGCATCCAGTTCCACTTGCTGCATGGTTCGGCAGGCGACGTTCTCCCTGGCTTTGTGTCTGACTGCGGCCTGGGGGCAGTGGTGACAGACTTCTCCCCCCTCAGAGAGCCACTGCAGTGGTTGGAGGATGTTAAAAAGACTCTTCCAAAGGACATTCCCCTCATACAGGTTGATGCCCACAATATTGTTCCGTGCTGGGTAGCATCACCTAAACTTGAGTACGCCGCCAGGACGATCAGAGGAAAAATCACTAAGCTTTTGCCAGAGTTCCTCACAGAGTTTCCTCTGGTAGAGAAACACCCATACACAGCTACTAGAACAGCCAAACCAGTAGACTGGGACAAAATCCTGGCCTCCCTGCAGGTTGACCGAGCAGTTGGAGAGCCGGAGTGGGCAAAGCCAGGCACCAGTGGAGGGATGGCCATGTTGGAGTCCTTCATTGATGTACGCCTTAAACTGTTTGACACCCAACGCAATGacccaaacgctgctgccctcAGCCAGTTGTCCCCCTGGATCCGCTTTGGCCACCTGTCAGCCCAACGTGTGGCACTGCAGGTTCAGCACAGTGGGAAGTCTGCAGGACATTCTGTCTCCTCCTTCATTGAGGAGCTGGTGGTGCGCAGGGAGCTGACCGACAACTTTTGCTTCTACAACAAGAAATACGACTGCGTGGAGGgtgcgTATGAGTGGGCTCAGAAGACCTTGAAAGATCATGCCAAAGACAAGAGGCCGTATCTCTACACGCGTGAACAGCTGGAGAAAGCAAAGACACATGACAAGCTCTGGAACGCTGCTCAGTACCAGATGGTCACTGAGGGGAAGATGCATGGTTTCTTGAGGATGTACTGGGCCAAAAAGATTCTGGAGTGGACTTCTTCACCTGAGGAGGCGCTCTCAATCGCTCTATACCTAAATGATCGCTATGAGCTGGATGGCCAGGACCCCAATGGCTTTGTTGGTTGTATGTGGTCTATTTGTGGCATCCATGATCAGggctggaaagagagagacgtTTTCGGGAAGATTCGCTACATGAACTACAAAGGCTGCCTGCGGAAGTTTGACGTAGCCCGGTTTGAGAGAAAGTACTGTCCCAAAAACCTTTGAAGCGTAAAATGTTTTGAAGGATGGGAATAAAATGTCTGGCAGCCTATATCCTAGATCTTTACCTCAGGGGGCATTTATAAGCCTTTCTTGCAGAGGATGTTTTGTTCttcactgacttttttttttttttttagttcttttttttaaacattgggCAGATTCTTTTACtgaatattcagacattcataaTTTAACATTAGATTACCACAGTGCCAACTTAATAAGCATAAAAGCTTTTATgctacttttttattactttttttttattttttaaatgtttattaaattgtattttCCACAAAAGATGCCTTGTTTATCATAAATGTTTGAACAACTGATTCCAcaacaccagaggcctgtactacgaagcaagatttggcgttaacgaggtaacttcaggttcaacccagggttttgtgtaccacgacggtggatcacctgttaccgggttc
>XM_039816695.1
CACCAGCGTGCTGGCTATGCGTGCTGGCTGCTTCTCGTAACTGGACTGCTAAACGAATAGCTACTTTGTCTGCCGTTTCTTTTGGTTAGCTTTAAATTACCTTTGCCAGAACTACTTCAGGTTTTATTCATGGCATGTTGCTCTGTCTTTGGAGAAGGCAACTTGCAGCTCATCTTTCTCCTCTGCACCAAGGCGACTCTTAGGCTTTGTTGCCCACAGTAATCATAGACCCACTTCAGCATTCTCCTCCCCGAGCAAGTCATTCACCAGTCAAACCATCATGTCAGACAAAAAACGCAAATCAACATCTTCAGCTGCTGCTGGTAAAGAGCCCAGTGCTAAGCAGCAGAAGTTGGCCCACAcgaaggagaagaaggagaatgAGAGAGCTGAGGGCTGGCTGCAGGACCTTGTGAAGcagcagaggacagagaagaagGAAATGAAATTCAACAAAAAGCGCCTCCGCTTTATGTCTGATACTGAGCAGGCAAAGCAGGGCTCAGAGGGTGTACTGTACTGGATGTTAAGAGACCACAGAGTACAAGATAATTGGGCGCTGGTCCAGGCCCAGCGGCTTGCTTTGGAGGAGAACCTTCCTCTGCACATCTGTGTCTGCCTGGTTGTCCCAAAATCAGAACTGTCTACTCTGAGACATTACAGCTTTATGCTAAAAGGTCTGAAAGAAGTTGCAAAGGAATGCAAAACCTTAGGCATCCAGTTCCACTTGCTGCATGGTTCGGCAGGCGACGTTCTCCCTGGCTTTGTGTCTGACTGCGGCCTGGGGGCAGTGGTGACAGACTTCTCCCCCCTCAGAGAGCCACTGCAGTGGTTGGAGGATGTTAAAAAGACTCTTCCAAAGGACATTCCCCTCATACAGGTTGATGCCCACAATATTGTTCCGTGCTGGGTAGCATCACCTAAACTTGAGTACGCCGCCAGGACGATCAGAGGAAAAATCACTAAGCTTTTGCCAGAGTTCCTCACAGAGTTTCCTCTGGTAGAGAAACACCCATACACAGCTACTAGAACAGCCAAACCAGTAGACTGGGACAAAATCCTGGCCTCCCTGCAGGTTGACCGAGCAGTTGGAGAGCCGGAGTGGGCAAAGCCAGGCACCAGTGGAGGGATGGCCATGTTGGAGTCCTTCATTGATGTACGCCTTAAACTGTTTGACACCCAACGCAATGacccaaacgctgctgccctcAGCCAGTTGTCCCCCTGGATCCGCTTTGGCCACCTGTCAGCCCAACGTGTGGCACTGCAGGTTCAGCACAGTGGGAAGTCTGCAGGACATTCTGTCTCCTCCTTCATTGAGGAGCTGGTGGTGCGCAGGGAGCTGACCGACAACTTTTGCTTCTACAACAAGAAATACGACTGCGTGGAGGgtgcgTATGAGTGGGCTCAGAAGACCTTGAAAGATCATGCCAAAGACAAGAGGCCGTATCTCTACACGCGTGAACAGCTGGAGAAAGCAAAGACACATGACAAGCTCTGGAACGCTGCTCAGTACCAGATGGTCACTGAGGGGAAGATGCATGGTTTCTTGAGGATGTACTGGGCCAAAAAGATTCTGGAGTGGACTTCTTCACCTGAGGAGGCGCTCTCAATCGCTCTATACCTAAATGATCGCTATGAGCTGGATGGCCAGGACCCCAATGGCTTTGTTGGTTGTATGTGGTCTATTTGTGGCATCCATGATCAGggctggaaagagagagacgtTTTCGGGAAGATTCGCTACATGAACTACAAAGGCTGCCTGCGGAAGTTTGACGTAGCCCGGTTTGAGAGAAAGTACTGTCCCAAAAACCTTTGAAGCGTAAAATGTTTTGAAGGATGGGAATAAAATGTCTGGCAGCCTATATCCTAGATCTTTACCTCAGGGGGCATTTATAAGCCTTTCTTGCAGAGGATGTTTTGTTCttcactgacttttttttttttttttagttcttttttttaaacattgggCAGATTCTTTTACtgaatattcagacattcataaTTTAACATTAGATTACCACAGTGCCAACTTAATAAGCATAAAAGCTTTTATgctacttttttattactttttttttattttttaaatgtttattaaattgtattttCCACAAAAGATGCCTTGTTTATCATAAATGTTTGAACAACTGATTCCAcaacaccagaggcctgtactacgaagcaagatttggcgttaacgaggtaacttcaggttcaacccagggttttgtgtaccacgacggtggatcacctgttaccgggttc

Function

NR:

description
PREDICTED: deoxyribodipyrimidine photo-lyase-like isoform X2

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0003904 deoxyribodipyrimidine photo-lyase activity molecular_function

KEGG:

id description
K01669 phrB; deoxyribodipyrimidine photo-lyase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816693.1 False 2244 mRNA 0.47 10 15199302 15205673
XM_039816694.1 True 2315 mRNA 0.47 10 15199307 15205673
XM_039816695.1 False 2274 mRNA 0.47 10 15199307 15205673

Neighbor

gene id symbol gene type direction distance location
LOC120568935 tsc22d2,LOC104947426,LOC101076449,LOC102205509,LOC107559349 coding upstream 4809 15170892 ~ 15194493 (+)
LOC120568090 NA coding upstream 47873 15148736 ~ 15151429 (+)
LOC120568088 NA coding upstream 61280 15128822 ~ 15138022 (+)
LOC120568427 NA coding upstream 87872 15097577 ~ 15111430 (+)
LOC120568425 NA coding upstream 105903 15089419 ~ 15093399 (+)
ephb3a LOC103359932,LOC100706883,LOC101473098 coding downstream 27209 15232882 ~ 15266224 (+)
LOC120568590 NA coding downstream 97753 15303426 ~ 15310540 (+)
b3gnt5b b3gnt5,LOC103359375 coding downstream 170140 15375813 ~ 15382330 (+)
dcun1d1 dcun1d1,LOC104947222,LOC107568628,LOC103396145 coding downstream 212591 15418264 ~ 15421158 (+)
ccdc39 LOC104962657 coding downstream 216067 15421740 ~ 15431774 (+)
G114747 LOC105904583 non-coding upstream 130851 15068149 ~ 15068451 (+)
G114746 NA non-coding upstream 132863 15066123 ~ 15066439 (+)
G114745 NA non-coding upstream 133909 15065090 ~ 15065393 (+)
G114650 NA non-coding upstream 387093 14811662 ~ 14812209 (+)
G114585 NA non-coding upstream 505400 14693566 ~ 14693902 (+)
G114889 setd9,LOC102796737 non-coding downstream 211059 15416732 ~ 15418048 (+)
G114904 NA non-coding downstream 226998 15432671 ~ 15432944 (+)
G114905 NA non-coding downstream 230431 15436104 ~ 15437753 (+)
G114909 ripk2 non-coding downstream 238805 15444478 ~ 15455375 (+)
G114944 NA non-coding downstream 343456 15549129 ~ 15549920 (+)
G114789 NA other upstream 42103 15151796 ~ 15157199 (+)
ro60 trove2 other upstream 173094 15013743 ~ 15026208 (+)
rgs18 rgs18,LOC106918816,LOC103139989,LOC103479038 other upstream 206219 14985777 ~ 14993083 (+)
LOC120568245 LOC103365337,LOC101481118,LOC102206401,LOC102290843 other upstream 903309 14287150 ~ 14295993 (+)
si:ch73-71c20.5 NA other upstream 2012938 13183284 ~ 13186364 (+)
LOC120568540 LOC108238308,LOC100706341,LOC103359463,LOC106530177,LOC102798013,LOC101474556,LOC102303803 other downstream 132884 15338557 ~ 15368780 (+)
asip2b agrp2,LOC105941385,LOC102299529,LOC102795060,LOC103358555 other downstream 267029 15472702 ~ 15478462 (+)
zgc:153115 klf13,LOC104948390,LOC103358333,LOC101073550,LOC105030379,LOC106568757,LOC107752329 other downstream 315109 15520782 ~ 15528769 (+)
slc35a3b LOC103357859,LOC104957008,LOC101481522,LOC102792347 other downstream 348798 15554471 ~ 15568494 (+)
st6galnac3 st6galnac3 other downstream 559010 15764683 ~ 15843094 (+)

Expression


Co-expression Network