LOC120568945 (LOC101485289,LOC100699127)


Basic Information

Item Value
gene id LOC120568945
gene name LOC101485289,LOC100699127
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18756206 ~ 18799833 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816704.1
GCGATAGAGAGCGCAAAAGGAACGCAGAGCCTCGGTGTATAATACAAGCCTGCACACCACCAACCCACCACCGCTATACGtccaatttctttttaattgaaCCCTTTTACTCCCGCTCGCAGGCAGTGCTGCAGGACTAGGATGACTGGGAAGACCCAGACCAGCAACGTGACCAACAAGAATGACCCTCGCTCCCTCAACTCCCGCGTCTTCATTGGCAACCTCAACACGGCCGTGGTAACCAAGGCCGACATCGAGGCCATCTTTGCCAAATACGGAAAGATTGTGGGCTGCTCTGTGCATAAGGGCTACGCCTTCGTTCAGTACGCCAGCGAGAGGAACGCCAGGGCAGCCGTGGCCGGGGAGAACACCAGGGTCATCGCCGGGCAATCACTAGATATCAACATGGCAGGAGAGCCAAAACCATACAGGCCTAAGTTGGGTTCCAAGAGGCCTCTCTCGTCCCTCTACAGTGGCTACGAGTTTGACTATGACTACTACAGAGATGATTTCTACAGCAGACTCTTTGAGTACCATGGTCGTGTTGTGCCCGCGACCCGTGCTGTGATCCCCATTAAACGTTCGCGGCTAGTCGTCCCGTCCACACGCAGAGCCAAATCCTCCCTTCCAGTCAgggcctgctcctcctcctcctcctcctcctcctcctcttcctcctcccgaGCGCTCAATGTCGGCTCCATCACAGTCCCTAAACTGAAGACAGACCAGCTCTTCACAATCAAGAAGGAGCTGTCACAGATCAAGACCAAGATTGACTCACTGCTGGGAAGACTGGAGAAGATTGAGAGGCAACATCGCTTTGACAGCGACATGCAGAGGAAAcaagaggaggtgtgtgtgtgtctccatggtAACGCAGCAGACCACTCTTGTGGAGAGGAGGCGGAGGGGACAGCCGAGGTGGAGGCGGGGGAGATGACGGACGGCGGCGAAGAGAATTTTGAAGATGAAGGCACCAGTGAAATgGTTGGTGGGGGGCTACAGTATAAGAAGATGGGAGGACAGATACCTGTAAAACCTTTTTGATCAAGAAGATGTATTTGAAATTAAACGAAAGCAACGACAGGAGTGGCTGACAGCAGAGGAAGAGTTTTTCaaacttgtttttttgcttgtttgccTCATTAGAACATGACACTTGTGTGTACTTTATCGAAATGCTGGTTATCAATATTCTCCAGACTACTGCAAGATCAACTGCAAAGAGCAATCAATAATTCCCCTTCAAGCTGATTGCCCTTCTGAAAAAACAGGACAATATATTGTGTGTTTAatatattatggtctgtatTGTGCATAGAAATACGGTTATGTTCATCAATCAGATGAACCATAACACCCTCTTTTGCCGTTTGTTCCGTTTCTGTGCATTGAAAACTGTGAAGAGCATTGACGTTGGCGGAGAGCTAAATCTGAATGAATAACACTTGATAATTATGTGAGTTTGCTTAATTCGTACATTTTTGCTAGTATGTAATTTATTCACAATGTCTCCACACAGTGTTGTGTATGCATATCATGTTTGTCGTTTGAATATGCATTTTGAGTtctgtttacattttgtttatggTAAACAAAAGATTAGAAGAGGCAATTTTTTTACTATCCGCATGTTAAAAATGTGGCTattatggatcatttttatTCATTGCATCTGTTACAGCTATGGATAGCTACAGCTATGGATGATAAATAAACCCGTTAATCCccagaaaagaagaaaacaagcaGCCTGTGTTGTGGCTTTCATTTCCACACACAATCTGGGGGGGGAAATGCTCACTGTGGTTCTGTGGGGGTTTTCTGCTCGGTACAAAACTCTATTTTCACTTACTGCTTGCAAAACAACTTCAACAATCTTTTGTATTAACCTTGTGTGACATGAGAAGCAGCATTGGAAATTTTCTACCTGACTAAACATAAAGTTAACTTTTTTCCTCCA
>XM_039816706.1
ACCACCAGCAGCGATAGAGAGCGCAAAAGGAACGCAGAGCCTCGGTGTATAATACAAGCCTGCACACCACCAACCCACCACCGCTATACGtccaatttctttttaattgaaCCCTTTTACTCCCGCTCGGCAGTGCTGCAGGACTAGGATGACTGGGAAGACCCAGACCAGCAACGTGACCAACAAGAATGACCCTCGCTCCCTCAACTCCCGCGTCTTCATTGGCAACCTCAACACGGCCGTGGTAACCAAGGCCGACATCGAGGCCATCTTTGCCAAATACGGAAAGATTGTGGGCTGCTCTGTGCATAAGGGCTACGCCTTCGTTCAGTACGCCAGCGAGAGGAACGCCAGGGCAGCCGTGGCCGGGGAGAACACCAGGGTCATCGCCGGGCAATCACTAGATATCAACATGGCAGGAGAGCCAAAACCATACAGGCCTAAGTTGGGTTCCAAGAGGCCTCTCTCGTCCCTCTACAGTGGCTACGAGTTTGACTATGACTACTACAGAGATGATTTCTACAGCAGACTCTTTGAGTACCATGGTCGTGTTGTGCCCGCGACCCGTGCTGTGATCCCCATTAAACGTTCGCGGCTAGTCGTCCCGTCCACACGCAGAGCCAAATCCTCCCTTCCAGTCAgggcctgctcctcctcctcctcctcctcctcctcctcttcctcctcccgaGCGCTCAATGTCGGCTCCATCACAGTCCCTAAACTGAAGACAGACCAGCTCTTCACAATCAAGAAGGAGCTGTCACAGATCAAGACCAAGATTGACTCACTGCTGGGAAGACTGGAGAAGATTGAGAGGCAACATCGCTTTGACAGCGACATGCAGAGGAAAcaagaggaggtgtgtgtgtgtctccatggtAACGCAGCAGACCACTCTTGTGGAGAGGAGGCGGAGGGGACAGCCGAGGTGGAGGCGGGGGAGATGACGGACGGCGGCGAAGAGAATTTTGAAGATGAAGGCACCAGTGAAATgGTTGGTGGGGGGCTACAGTATAAGAAGATGGGAGGACAGATACCTGTAAAACCTTTTTGATCAAGAAGATGTATTTGAAATTAAACGAAAGCAACGACAGGAGTGGCTGACAGCAGAGGAAGAGTTTTTCaaacttgtttttttgcttgtttgccTCATTAGAACATGACACTTGTGTGTACTTTATCGAAATGCTGGTTATCAATATTCTCCAGACTACTGCAAGATCAACTGCAAAGAGCAATCAATAATTCCCCTTCAAGCTGATTGCCCTTCTGAAAAAACAGGACAATATATTGTGTGTTTAatatattatggtctgtatTGTGCATAGAAATACGGTTATGTTCATCAATCAGATGAACCATAACACCCTCTTTTGCCGTTTGTTCCGTTTCTGTGCATTGAAAACTGTGAAGAGCATTGACGTTGGCGGAGAGCTAAATCTGAATGAATAACACTTGATAATTATGTGAGTTTGCTTAATTCGTACATTTTTGCTAGTATGTAATTTATTCACAATGTCTCCACACAGTGTTGTGTATGCATATCATGTTTGTCGTTTGAATATGCATTTTGAGTtctgtttacattttgtttatggTAAACAAAAGATTAGAAGAGGCAATTTTTTTACTATCCGCATGTTAAAAATGTGGCTattatggatcatttttatTCATTGCATCTGTTACAGCTATGGATAGCTACAGCTATGGATGATAAATAAACCCGTTAATCCccagaaaagaagaaaacaagcaGCCTGTGTTGTGGCTTTCATTTCCACACACAATCTGGGGGGGGAAATGCTCACTGTGGTTCTGTGGGGGTTTTCTGCTCGGTACAAAACTCTATTTTCACTTACTGCTTGCAAAACAACTTCAACAATCTTTTGTATTAACCTTGTGTGACATGAGAAGCAGCATTGGAAATTTTCTACCTGACTAAACATAAAGTTAACTTTTTTCCTCCA
>XM_039816707.1
ATAGAGAGCGCAAAAGGAACGCAGAGCCTCGGTGTATAATACAAGCCTGCACACCACCAACCCACCACCGCTATACGtccaatttctttttaattgaaCCCTTTTACTCCCGCTCGTGTTTCTCTGGGGTTGGAGGCTGTACGTCTCCGCCGGCGCAAAAATAACAGTTTTGATTTTCATCTTTGAGGATTTTGCTTTTCTAATAGCAGGCAGTGCTGCAGGACTAGGATGACTGGGAAGACCCAGACCAGCAACGTGACCAACAAGAATGACCCTCGCTCCCTCAACTCCCGCGTCTTCATTGGCAACCTCAACACGGCCGTGGTAACCAAGGCCGACATCGAGGCCATCTTTGCCAAATACGGAAAGATTGTGGGCTGCTCTGTGCATAAGGGCTACGCCTTCGTTCAGTACGCCAGCGAGAGGAACGCCAGGGCAGCCGTGGCCGGGGAGAACACCAGGGTCATCGCCGGGCAATCACTAGATATCAACATGGCAGGAGAGCCAAAACCATACAGGCCTAAGTTGGGTTCCAAGAGGCCTCTCTCGTCCCTCTACAGTGGCTACGAGTTTGACTATGACTACTACAGAGATGATTTCTACAGCAGACTCTTTGAGTACCATGGTCGTGTTGTGCCCGCGACCCGTGCTGTGATCCCCATTAAACGTTCGCGGCTAGTCGTCCCGTCCACACGCAGAGCCAAATCCTCCCTTCCAGTCAgggcctgctcctcctcctcctcctcctcctcctcctcttcctcctcccgaGCGCTCAATGTCGGCTCCATCACAGTCCCTAAACTGAAGACAGACCAGCTCTTCACAATCAAGAAGGAGCTGTCACAGATCAAGACCAAGATTGACTCACTGCTGGGAAGACTGGAGAAGATTGAGAGGCAACATCGCTTTGACAGCGACATGCAGAGGAAAcaagaggaggtgtgtgtgtgtctccatggtAACGCAGCAGACCACTCTTGTGGAGAGGAGGCGGAGGGGACAGCCGAGGTGGAGGCGGGGGAGATGACGGACGGCGGCGAAGAGAATTTTGAAGATGAAGGCACCAGTGAAATgGTTGGTGGGGGGCTACAGTATAAGAAGATGGGAGGACAGATACCTGTAAAACCTTTTTGATCAAGAAGATGTATTTGAAATTAAACGAAAGCAACGACAGGAGTGGCTGACAGCAGAGGAAGAGTTTTTCaaacttgtttttttgcttgtttgccTCATTAGAACATGACACTTGTGTGTACTTTATCGAAATGCTGGTTATCAATATTCTCCAGACTACTGCAAGATCAACTGCAAAGAGCAATCAATAATTCCCCTTCAAGCTGATTGCCCTTCTGAAAAAACAGGACAATATATTGTGTGTTTAatatattatggtctgtatTGTGCATAGAAATACGGTTATGTTCATCAATCAGATGAACCATAACACCCTCTTTTGCCGTTTGTTCCGTTTCTGTGCATTGAAAACTGTGAAGAGCATTGACGTTGGCGGAGAGCTAAATCTGAATGAATAACACTTGATAATTATGTGAGTTTGCTTAATTCGTACATTTTTGCTAGTATGTAATTTATTCACAATGTCTCCACACAGTGTTGTGTATGCATATCATGTTTGTCGTTTGAATATGCATTTTGAGTtctgtttacattttgtttatggTAAACAAAAGATTAGAAGAGGCAATTTTTTTACTATCCGCATGTTAAAAATGTGGCTattatggatcatttttatTCATTGCATCTGTTACAGCTATGGATAGCTACAGCTATGGATGATAAATAAACCCGTTAATCCccagaaaagaagaaaacaagcaGCCTGTGTTGTGGCTTTCATTTCCACACACAATCTGGGGGGGGAAATGCTCACTGTGGTTCTGTGGGGGTTTTCTGCTCGGTACAAAACTCTATTTTCACTTACTGCTTGCAAAACAACTTCAACAATCTTTTGTATTAACCTTGTGTGACATGAGAAGCAGCATTGGAAATTTTCTACCTGACTAAACATAAAGTTAACTTTTTTCCTCCA
>XM_039816708.1
CGATAGAGAGCGCAAAAGGAACGCAGAGCCTCGGTGTATAATACAAGCCTGCACACCACCAACCCACCACCGCTATACGtccaatttctttttaattgaaCCCTTTTACTCCCGCTCGCAGGCAGTGCTGCAGGACTAGGATGACTGGGAAGACCCAGACCAGCAACGTGACCAACAAGAATGACCCTCGCTCCCTCAACTCCCGCGTCTTCATTGGCAACCTCAACACGGCCGTGGTAACCAAGGCCGACATCGAGGCCATCTTTGCCAAATACGGAAAGATTGTGGGCTGCTCTGTGCATAAGGGCTACGCCTTCGTTCAGTACGCCAGCGAGAGGAACGCCAGGGCAGCCGTGGCCGGGGAGAACACCAGGGTCATCGCCGGGCAATCACTAGATATCAACATGGCAGGAGAGCCAAAACCATACAGGCCTAAGTTGGGTTCCAAGAGGCCTCTCTCGTCCCTCTACAGTGGCTACGAGTTTGACTATGACTACTACAGAGATGATTTCTACAGCAGACTCTTTGAGTACCATGGTCGTGTTGTGCCCGCGACCCGTGCTGTGATCCCCATTAAACGTTCGCGGCTAGTCGTCCCGTCCACACGCAGAGCCAAATCCTCCCTTCCAGTCAgggcctgctcctcctcctcctcctcctcctcctcctcttcctcctcccgaGCGCTCAATGTCGGCTCCATCACAGTCCCTAAACTGAAGACAGACCAGCTCTTCACAATCAAGAAGGAGCTGTCACAGATCAAGACCAAGATTGACTCACTGCTGGGAAGACTGGAGAAGATTGAGAGGCAACATCGCTTTGACAGCGACATGCAGAGGAAAcaagaggaggtgtgtgtgtgtctccatggtAACGCAGCAGACCACTCTTGTGGAGAGGAGGCGGAGGGGACAGCCGAGGTGGAGGCGGGGGAGATGACGGACGGCGGCGAAGAGAATTTTGAAGATGAAGGCACCAGTGAAATgATAGAGAATCACATATCAGACATTGACAACTGAGTAAGGTTGGTGGGGGGCTACAGTATAAGAAGATGGGAGGACAGATACCTGTAAAACCTTTTTGATCAAGAAGATGTATTTGAAATTAAACGAAAGCAACGACAGGAGTGGCTGACAGCAGAGGAAGAGTTTTTCaaacttgtttttttgcttgtttgccTCATTAGAACATGACACTTGTGTGTACTTTATCGAAATGCTGGTTATCAATATTCTCCAGACTACTGCAAGATCAACTGCAAAGAGCAATCAATAATTCCCCTTCAAGCTGATTGCCCTTCTGAAAAAACAGGACAATATATTGTGTGTTTAatatattatggtctgtatTGTGCATAGAAATACGGTTATGTTCATCAATCAGATGAACCATAACACCCTCTTTTGCCGTTTGTTCCGTTTCTGTGCATTGAAAACTGTGAAGAGCATTGACGTTGGCGGAGAGCTAAATCTGAATGAATAACACTTGATAATTATGTGAGTTTGCTTAATTCGTACATTTTTGCTAGTATGTAATTTATTCACAATGTCTCCACACAGTGTTGTGTATGCATATCATGTTTGTCGTTTGAATATGCATTTTGAGTtctgtttacattttgtttatggTAAACAAAAGATTAGAAGAGGCAATTTTTTTACTATCCGCATGTTAAAAATGTGGCTattatggatcatttttatTCATTGCATCTGTTACAGCTATGGATAGCTACAGCTATGGATGATAAATAAACCCGTTAATCCccagaaaagaagaaaacaagcaGCCTGTGTTGTGGCTTTCATTTCCACACACAATCTGGGGGGGGAAATGCTCACTGTGGTTCTGTGGGGGTTTTCTGCTCGGTACAAAACTCTATTTTCACTTACTGCTTGCAAAACAACTTCAACAATCTTTTGTATTAACCTTGTGTGACATGAGAAGCAGCATTGGAAATTTTCTACCTGACTAAACATAAAGTTAACTTTTTTCCTCCA

Function

NR:

description
RNA-binding Raly-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816704.1 False 1966 mRNA 0.46 8 18756216 18799833
XM_039816706.1 False 1973 mRNA 0.46 8 18756206 18799833
XM_039816707.1 True 2053 mRNA 0.46 9 18756219 18799833
XM_039816708.1 False 2003 mRNA 0.46 9 18756217 18799833

Neighbor

gene id symbol gene type direction distance location
and2 LOC103353068 coding upstream 19016 18730728 ~ 18737190 (+)
apoda.1 LOC103353029,LOC104955147,LOC101484702,LOC102313692,LOC102209340 coding upstream 37695 18716358 ~ 18718511 (+)
LOC120568690 NA coding upstream 54979 18699482 ~ 18701227 (+)
LOC120568684 NA coding upstream 73787 18680600 ~ 18682419 (+)
nadkb LOC103353035,LOC102782138,LOC101483211,LOC102289018 coding upstream 131029 18609213 ~ 18625177 (+)
lrrcc1 lrrcc1 coding downstream 3818 18803651 ~ 18820386 (+)
e2f5 LOC100699665,LOC102779743 coding downstream 21263 18821096 ~ 18833039 (+)
si:ch211-106h4.9 LOC103360860 coding downstream 68249 18868082 ~ 18920043 (+)
LOC120568750 NA coding downstream 169476 18969309 ~ 18984876 (+)
LOC120568749 NA coding downstream 188856 18988689 ~ 19013997 (+)
G115864 NA non-coding upstream 61560 18694391 ~ 18694646 (+)
G115863 NA non-coding upstream 61905 18693005 ~ 18694301 (+)
LOC120568663 NA non-coding upstream 64085 18689634 ~ 18692121 (+)
G115862 NA non-coding upstream 71741 18683714 ~ 18684465 (+)
G115856 samd7 non-coding upstream 106402 18648774 ~ 18649804 (+)
G115889 NA non-coding downstream 33710 18833543 ~ 18833742 (+)
G115921 NA non-coding downstream 42739 18842572 ~ 18842794 (+)
G115923 NA non-coding downstream 65293 18865126 ~ 18866134 (+)
G115931 NA non-coding downstream 122920 18922753 ~ 18923170 (+)
G115934 NA non-coding downstream 132093 18931926 ~ 18933912 (+)
LOC120568911 NA other upstream 30759 18720365 ~ 18725447 (+)
LOC120568691 NA other upstream 82066 18660429 ~ 18674140 (+)
skila skil,LOC102782637 other upstream 153943 18566633 ~ 18602263 (+)
G115729 NA other upstream 401862 18305149 ~ 18354344 (+)
LOC120567767 NA other upstream 726311 18027280 ~ 18029895 (+)
LOC120568770 NA other downstream 217206 19017039 ~ 19052242 (+)
emilin2a NA other downstream 647178 19447011 ~ 19465381 (+)
LOC120567833 gbg5 other downstream 1573394 20373227 ~ 20375633 (+)
LOC120568904 crhr2,LOC101476678,LOC102776588 other downstream 2082784 20882617 ~ 20915322 (+)
LOC120568354 NA other downstream 3071120 21870953 ~ 21897391 (+)

Expression


Co-expression Network