vcpip1 (vcpip1,LOC102795816)


Basic Information

Item Value
gene id vcpip1
gene name vcpip1,LOC102795816
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 3936631 ~ 3949566 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816709.1
GCCAGTTGCTAAAGGAAAAAACAGCCGCTTCCGTGTTGTTCTTGTATTATTGTGGCAAATAACTATCGCTAGCAGAGTCGAAGCTAACAGACAGCCTCGCCGGAGGGTAACTATCATGATTTAGTGAAGCTGACGCACAGTTTTTAAGCCTTTCCCGCCCGACATGTCGCTGCTACAGAGCtcaaagaaaaaagacaagCGTATTTTGTCCGGTACCTGCCCGGACCCGAAATGTCAGGCGAGGCTATTCTTCCCCGCTTACGGCTCCGTTAGCATCGAGTGCACCGAGTGTGGTCAACGCCACGAACAGAAGAACCTGTTAAATGTCGAAGAAGTCACGGATCCCGATGTTGTGCTCCACAATCTGCTCAGAAACGCCCTGCTCGGCGTCACCGGGGCCCCGAAGAAAGGCACGGAGCTGGTGAAAGTAATGGGGCTTTCTAATTACCACTGCAAGCTGCTGTCGCCGGTGCTCACCAGGTACGGCATGGATAAACAAACCGGCAAAGCCAAGCTGCTGAGGGACATGAACCAAGGTGAGATGTTTGACTGCTCTCTCCTGGGAGACAGAGCTTTTCTCATCGAGCCGGACCATGTTTCCACAATGGGCTACGGCAAAGACCGGTCAGGGAGCCTCATATACCTCCATGACACCCTGGAGGAGGTGAAGAAAGCCAACAGCAGCAGGGAATGTCTCATCCCCGTCCATGTAGACGGAGACGGGCACTGCCTGGTCCACGCCGTGTCCCGAGCGCTGGTGGGCAGGGAACTGTTCTGGCACGCCCTGAGGGAAAACCTGAAACAGAACTTCAAGCAGAACCTGGACCGCTACAAGGCTCTCTTTCAGGATTTTATCGACGCCGCAGAGTGGGAGGACATCATAAACGAGTGCGATCCGCTTTTCATCCCGCCTGAAGGCGTGCCGCTCGGACTTCGCAACATCCATATATTTGGTTTAGCCAACGTCCTGCACCGGCCCATAATCCTGCTGGACTCCCTGAGCGGGATGAGGAGCTCTGGGGATTATTCGGCCACCTTCCTGCCCGGGCTAGTAGCGGAGGAGCAGTGCAGCGGGAAAGACGGGAAGCTCAACAAACCGATCTGCATCGCGTGGAGCAGCTCCGGCAGGAACCACTACATCCCCTTGGTGGGAATCAAGAACACGGTGCTGCCCAAACTGCCGGCTCGCCTGCTGCCGAAAGCCTGGGGCGTCCCGCAGGAGCTCATCAGGAAGTACATCAAGCTGGAGCAAGACGGCAGCTGCGTGATCGGAGGCGACCGCAGCCTCCAGGATAAGTACCTGATGCGGCTGGTCAACGCCATGGAGGAGGTGTTCATGGAGAAGCACAGCATCCATCCCGCGCTGGTGGCGGACGTGCACCAGTACGTGTATAGGCGCACCGGCGTGATCGGCATCCAGCCCGAGGAGGTGACCGAGGCAGCTAAGAAGTCGGTGATGGAGAACCGGCTGCACCGCTGCCTGATATGCGGCGCTCTCTCCGAGCTGCACGTCCTGCCGGAGTGGCTGGCTCCTGGCGGGAAGCTCTACAACTTGGCCAAGTCCACTCACGGCCAGCTGCGGCCGGATAAGAACTACAGCTTCCCGCTGAACAACGTGGTGTGCTCCTACGACCCCCAGAGAGACGTGCTCGTCCCGGATTATAAACTGAGCTCCCTCAACACCTGCAACTGGTGTCACGGCACGTCGGTGCGCCACATCCGCGGCGACGGCTCCGTGGTTTATCTGGACGGAGACAGGACCAACACGCGCTCCCACGGCGGGAAATGCGGATGCGGCTTCAAACATTTCTGGGAGGAGAAGGAGTACGACAACCTCCCCGAGGCGTTCCCGATCACGCTGGAGTGGGGCGGCCGCGTGGTGAGAGAGACGGTGTACTGGTTCCAGTACGAGACCGAGCCGTCGCTGAACAGCAACGTGTACGACGTGGCCATGAAGCTCGTCACCAAGCACTTCCCGGGAGAGTTTGGCAGCGAGATCCTGGTGCAGAAAGTAGTCAACACCATCCTGCACCACACCGCCAAAAAGAACCCGGACGAGTACAACCCGGTGTCCATCGACGGGGCTCACGTGCCGCGTCTCACCGACGCCGCGGAGACTCCGACGCAGGCGGCGCCAGACCCGCAGCCGCCCACTAAGATCATCCTCACGGGTCAGAAAGGGAAGACGCTGCACAAGGAGGAGCTGACGATGAGCCGGGCGGAGCGCAGCATCCAGCAGAGCATCAGCGAGCAGGCCTTCGTCACGCAGAAGCGCCTCACGGACAAGCTGAAGCAGGAGCAGAAGGGCCACGCCCGCACGTCTTCCCCCGGAGGCTCACCGGAgacttcttcttcctcttcggCTCCGGCCACGCCGACTAAGTCCTCCCCGTTGTCGTCGTCCAATAAGGAGAAGAAGATCCGCGTGACGACCAGCGACGGCAGGCAGGCGATGCTGACCCTGCAGGCTCACACCACCTTCTCGGAGCTGCAGCGGAGCATCGCCAACCACTTCGGCGTGCCGCCGGCGCAGCAGTTCATCCGCTACGGCTTCCCGCCCAAAGAGCTGGTCCCCGCGAGGGACGGCGAGGAGAACGAGCCCGTGGCGCTGCAGCACGGCGACAGGGTGACGGTGGAGATACTGAGAGGCGGCAGCGGCGAGGAGAAAAACCCCGTGGCGTCCATACCGCGCGCCTCCAGCTCCCACTCCGGCCTGCACCACGCGGTGAAGAGCGAGGACGCCGTGACGACGAGCGGCAGGATGAGCAGCCGCGAACTCCAGGACAGCATCGACCTCGAGatgtcctccctctgtctcctaGCAACCTTGATGGGCGAGGACGTTTGGTCGTACGCAAAGAAGCTGCCGCACTTATTCCAGCAGGGCGGAGTCTTCTACAACATCGTCAAGAAGGACATGGGCCTGATGGACGGGAAGCACTGCACGCTGCCTCACCTGACGGGGAAAACCTTTGTCTACAACGCCGCCGAGGAGCGCCTGGAGCTGTGCGTGGACGCCGCGGGCCACTTCCCAGTCGGCCCCGATGTGGAGGATCTTGTGAAGGAGGCGGTGGCCCAGCTGCGCCCAGACGGCGCCGGCCGCGGCAGCCGAGAGGGCAGCCCGTCTCACGGCGGGCTGCGGCTCGGCAGCGGCGGCGTCGTGAGGAAGAAGGAGCAGCTGCAGAGCGTCACGGCCTTCCAGGGTAAAGGCCACTCGCTGGGCAGCGCCGGGAACTCCTCCCCTCCTGAGCACCGGCCTATCACGCGCCAACACAGCAGCGGCGTGGACCTGAGCGCCAGCGTGTCCCGGGGCCCACCGGACCTGTCGGACATCCCCGAGGACGCCACGCGGGAGCTGGTTCGCATGGCGCCGGGCTTCGTCACCATGAAGGACGGGCGCGGGCCGGACCCCGGCCTGATGGAGCAGCAGCGGAGGAAGCTACAGGAGATGGTGTCCTCCATCCAGGCCTCCATGGAGCGCCACCTCCGAGAGCAGCAGAGCGCCGGCGCCGGCCAGGAGCGGACAGACGGGACTAAGGCGGGCCAGCCGACGCCTAAGGTCGACCGCGAACCTGCGGCGGGCGCGGCCGGCAAACCGGACGGGAAGGCGGAGCAAACGGAGGAGATGGAGAGTCAGGACGGCGAGCAAAACAACGCCATGGAACCCATGGATCACTCCTGATCACTCCTGAccagggttgggcatcgtttagattttaatgattctgattccacttccgattcttcctttcgattccggttcttcgAGCGGTGGAgctgaaacgggtcacatgcttatttcacaaataagaggaacgttttattttgattcaaaggtggggttgcagtttgacgggggGCTTTTTTCAACGTATAATAAAGCCActctagagcgccgcttactgagCTCcgcggctgcaacacaacaagcgcccggtcgctacggaaacccaaaacttgcgcatgttaaatttagAACCcgttg

Function

symbol description
vcpip1 Predicted to enable thiol-dependent deubiquitinase. Acts upstream of or within cranial skeletal system development. Orthologous to human VCPIP1 (valosin containing protein interacting protein 1).

NR:

description
PREDICTED: deubiquitinating protein VCIP135

GO: NA

KEGG:

id description
K11861 VCPIP1, VCIP135; deubiquitinating protein VCIP135

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816709.1 True 3985 mRNA 0.61 3 3936631 3949566

Neighbor

gene id symbol gene type direction distance location
LOC120568332 NA coding upstream 111197 3815820 ~ 3825434 (+)
LOC120568529 NA coding upstream 128941 3803898 ~ 3807690 (+)
LOC120568326 NA coding upstream 220676 3715566 ~ 3715955 (+)
LOC120568524 NA coding upstream 336059 3596415 ~ 3600572 (+)
ptmab NA coding upstream 632405 3298864 ~ 3304226 (+)
dusp28 dusp28,LOC102795231 coding downstream 10026 3959592 ~ 3964053 (+)
LOC120568531 NA coding downstream 36879 3986445 ~ 3992589 (+)
LOC120568532 NA coding downstream 46051 3995617 ~ 3997859 (+)
crfb16 NA coding downstream 101754 4051320 ~ 4065021 (+)
cavin4a murc,LOC104936762,LOC101469804,LOC100705704,LOC101164252 coding downstream 387519 4337085 ~ 4349158 (+)
G111789 NA non-coding upstream 94672 3791992 ~ 3841959 (+)
G111785 NA non-coding upstream 106772 3743977 ~ 3829859 (+)
G111792 NA non-coding upstream 135933 3799802 ~ 3800698 (+)
LOC120568336 LOC106921407,LOC102295145 non-coding upstream 138291 3795799 ~ 3798340 (+)
G111779 NA non-coding upstream 277760 3655819 ~ 3658871 (+)
G111819 NA non-coding downstream 1378 3950944 ~ 3957274 (+)
G111821 NA non-coding downstream 4462 3954028 ~ 4018396 (+)
G111832 LOC102198835,LOC101471160,LOC102289605,LOC100700585,LOC102794384,LOC101068328 non-coding downstream 52448 4002014 ~ 4010693 (+)
G111844 NA non-coding downstream 135536 4085102 ~ 4087986 (+)
G111851 LOC104960641,LOC102303545,LOC106675581,LOC102799398,LOC102203668 non-coding downstream 141461 4091027 ~ 4139026 (+)
LOC120568521 NA other upstream 84597 3540987 ~ 3852034 (+)
LOC120568327 LOC102295145 other upstream 411516 3500679 ~ 3525115 (+)
LOC120568331 NA other upstream 430503 3491589 ~ 3506128 (+)
LOC120567769 LOC102296991,LOC102211951,LOC102799200,LOC101465856 other upstream 537448 3388054 ~ 3399183 (+)
G111494 NA other upstream 860730 3016958 ~ 3075901 (+)
G111848 NA other downstream 139078 4088644 ~ 4137543 (+)
G111850 LOC102799398 other downstream 140942 4090508 ~ 4138933 (+)
tmeff1a tmeff1,LOC102775778 other downstream 262558 4212124 ~ 4326186 (+)
dnaaf11 NA other downstream 549428 4498994 ~ 4592347 (+)
G111910 NA other downstream 595859 4545425 ~ 4546082 (+)

Expression


Co-expression Network