LOC120568950 (atp5l,LOC108233819)


Basic Information

Item Value
gene id LOC120568950
gene name atp5l,LOC108233819
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 20334361 ~ 20336124 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816713.1
ACCTCATGCCACTTTTCTTCATGTTGTTTCCTCGCGTACTTTCTCATTACGAAGAGCCGGAGATCGTTTAGAACCAGAACCCAGGCACATACTCTTCGTTATGGCTCAGGCGGGACAGAAACTCGTTGCAAAAGTACCAACTTTACTCGGTGCCGTTGTCACATACTCCAAACCCCGACTAGCGACCTTCTGGCACTATGCCCGGGTGGAGCTCGTCCCCCCGTCCCCTGCTGAGATCCCTAAAGCCGTAGAGGCAGCATCGAGCCTCATTAAGAGCTTCCGGGCAGGACGCCTGGGACAAACTACAGTAAAAGATGCCTTAAGGAATGGACTCGTGGCCACTGAGGTGCTGATGTGGTTCTACATTGGAGAGTGCATTGGCAAAGGAGGCATTATTGGATATGATGTCTGAATGTTGTActgttctttcttcttttcactTTTAATCGTCACATTCTCAGCAACCTGCAtcaaattttcaaaataaacaaagtCTATAGTCAAAAAAGTA

Function

symbol description
atp5l Predicted to enable proton transmembrane transporter activity. Predicted to be involved in ATP synthesis coupled proton transport. Predicted to act upstream of or within ATP biosynthetic process and ion transport. Predicted to be located in membrane and mitochondrion. Predicted to be part of mitochondrial proton-transporting ATP synthase complex, coupling factor F(o). Orthologous to several human genes including ATP5MG (ATP synthase membrane subunit g).

NR:

description
ATP synthase subunit g, mitochondrial

GO:

id name namespace
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
K02140 ATPeFG, ATP5L, ATP20; F-type H+-transporting ATPase subunit g

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816713.1 True 511 mRNA 0.47 3 20334361 20336124

Neighbor

gene id symbol gene type direction distance location
kiss1ra gpr54,LOC102788056,LOC101463985,LOC104942405 coding upstream 82224 20236804 ~ 20252137 (+)
zgc:113531 LOC104917724,LOC100692768,LOC101464837,LOC104948902,LOC102196942 coding upstream 309721 20020348 ~ 20024640 (+)
eef1da LOC106532782,LOC101466496,LOC102194655,LOC102290633,LOC103361414 coding upstream 386891 19921315 ~ 19947470 (+)
LOC120567775 adcyap1r1,LOC103396405,LOC102193585,LOC100710985,LOC104917732 coding upstream 451933 19854988 ~ 19882428 (+)
LOC120567771 NA coding upstream 507389 19802991 ~ 19826972 (+)
LOC120568873 NA coding downstream 3379 20339503 ~ 20347484 (+)
bcl10 bcl10,LOC102797731 coding downstream 20992 20357116 ~ 20359100 (+)
mcoln3a LOC104953893 coding downstream 24159 20360283 ~ 20366532 (+)
ssx2ipa ssx2ip,LOC103359758 coding downstream 30636 20366760 ~ 20373145 (+)
gpt LOC102200225,LOC103359759,LOC101485501,LOC100690242,LOC102299610,LOC102784352 coding downstream 40851 20376975 ~ 20396218 (+)
G116327 NA non-coding upstream 11820 20322288 ~ 20322541 (+)
G116322 NA non-coding upstream 19090 20314888 ~ 20315271 (+)
LOC120567788 NA non-coding upstream 130623 20202125 ~ 20203738 (+)
G116216 NA non-coding upstream 431542 19902243 ~ 19902819 (+)
G116215 NA non-coding upstream 448662 19884595 ~ 19885699 (+)
LOC120567944 NA non-coding downstream 312481 20648605 ~ 20654150 (+)
G116461 NA non-coding downstream 355495 20691619 ~ 20691985 (+)
G116463 NA non-coding downstream 356763 20692887 ~ 20693141 (+)
G116464 NA non-coding downstream 357296 20693420 ~ 20696473 (+)
G116465 NA non-coding downstream 360780 20696904 ~ 20699209 (+)
emilin2a NA other upstream 868980 19447011 ~ 19465381 (+)
LOC120568770 NA other upstream 1282119 19017039 ~ 19052242 (+)
LOC120568911 NA other upstream 1608914 18720365 ~ 18725447 (+)
LOC120568691 NA other upstream 1660221 18660429 ~ 18674140 (+)
skila skil,LOC102782637 other upstream 1732098 18566633 ~ 18602263 (+)
LOC120567833 gbg5 other downstream 37103 20373227 ~ 20375633 (+)
LOC120568904 crhr2,LOC101476678,LOC102776588 other downstream 546493 20882617 ~ 20915322 (+)
LOC120568354 NA other downstream 1534829 21870953 ~ 21897391 (+)
LOC120567968 NA other downstream 2271925 22608049 ~ 22620131 (+)
LOC120568311 LOC103368946,LOC103142996,LOC106925933,LOC104929332 other downstream 2305386 22641510 ~ 22681293 (+)

Expression


Co-expression Network