pold3 (pold3,LOC107703443)


Basic Information

Item Value
gene id pold3
gene name pold3,LOC107703443
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 36449037 ~ 36463662 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816721.1
TGACATTTAACAGGAAGTAAATAAACTCTTCCCGCGCAGTTAAATCCAATCGGTTCAACTAGACGTCTGTATTCACGGATAATCAAACACAATGGACGAGCTGTATTTAGATAACATCGACGAATTTGTCAACGACCACGATAAGATAGTGACCTATAAATGGCTGAGTCTCACTCTGGGAGTCCATGTCAACACAGCCAAACAAATGCTCTATCATTATCTGGATCACAAGAGGAAGGAGAGTTCAGATCCGCTCCATGCTACCTACCTCGTGTCGGGGAAGTTTGTGGACAATGGCCAGACGAGTCACAAGGTGTCCGTAGTCAAAGAGGACCAGTTGGAAGACGTCAAATCCAAGATGAGCTTGATCGTCAGCGTGCACGTCTACAGTGTCCAGAAAGCTCTGCTGAAAGACAGCGGCCCCCTCTATGGTGTCGACTACGACGCCGTCAAAGACAATCTGAAGAACTGCAGCAGATACAGTGCCATCCGCTGTGCCAGCGCAGTGCCCAGGTCCTCTGTGGAGCTGCAGCAGGCCAGACACACCCAGCCAGCTCCTGCACCGGAGCCTGAACACAAGAAATCCACCACCAATGGAGATGCTACTCCGGCTTCCAAACCTTCCACCAAGCCACAGAAAAGCATCATGGGAATGTTTGCAAATAAGAGCGCTCTTAAGAACCAGGACAGTGGTAAAGAGGTGAAGTCGGAGCAGAAGGAGGATGCACCTGTGgTCGATGAGCCCAAAAGCAAACCAGCTGCAAAAGCCAACCCTATGATGAACTTCTTTGGCACTCAAGCAGCAAAGAAAACGGTGAAGCAGGAGGAAGCagctccatcatcatcatcatcctcagcAGAGCAGCGGCGGCCCAGTTCACAGCCGGAGGAAAcgcacgctgctgctgctgctgctgctgctgctgctgtggagcCGCCCAAAAACTCCAAGAAAGACTCCAGGAGCAAAACCAAGCGAATGGAGGATTCTGACAGCGAGGAGGagaaaatggacaaaaaaaagagacggCGGATTAAGAAGCCTGAACCAGACAGCAGCGATGAAGATGTCATTCCAGATTCCCCACAGCAGATGGAGACAAGAGAAGCGTCCCCAAGTCCTAAGGAGGAGGTGGAGCCTGTTTCACAGTCACATCAGGGAAACTGTGAGATGAAGACGAGGAAGAGGAGACGCGTCCTGAAATCTCGTACCTTTGTAGACGATGAAGGATGCATCGtGACAGAGAAAGGCTATGAGAGTGAATCGTACTCTGAAGCAGAGGACGACGTTCCCAAAGATCCCATCCCTGCAAAACGACCGGCAAGTAGCAAACCGGACGAGAAGAAAAGTCAAAAGAAAGCGTCCGCAAATTCAAATAAAGGAACTAAACAAGCTTCCATCATGGGATTTTTCCAAAAGAAATGACGGGGGGACCGCGTCGGACACTTGCATAGGCGCCCGAGGGACAAAAAGCACTGCTGGAGACTTTCTCTGACCGTCTTGAGATAAAACTGAAACGCATCGTGTTGACAAATGGGGACTGCAAATCACTTCTCGAAAAGGACTTCAACTACACGTACGGGTCAATCGGGATGAAAACCAACTCGATTTTCACCTAGCCAGCTGTGAACACATGCTCTActcaataaatataaaatgctGAAACTTA
>XM_039816722.1
TGACATTTAACAGGAAGTAAATAAACTCTTCCCGCGCAGTTAAATCCAATCGGTTCAACTAGACGTCTGTATTCACGGATAATCAAACACAATGGACGAGCTGTATTTAGATAACATCGACGAATTTGTCAACGACCACGATAAGATAGTGACCTATAAATGGCTGAGTCTCACTCTGGGAGTCCATGTCAACACAGCCAAACAAATGCTCTATCATTATCTGGATCACAAGAGGAAGGAGAGTTCAGATCCGCTCCATGCTACCTACCTCGTGTCGGGGAAGTTTGTGGACAATGGCCAGACGAGTCACAAGGTGTCCGTAGTCAAAGAGGACCAGTTGGAAGACGTCAAATCCAAGATGAGCTTGATCGTCAGCGTGCACGTCTACAGTGTCCAGAAAGCTCTGCTGAAAGACAGCGGCCCCCTCTATGGTGTCGACTACGACGCCGTCAAAGACAATCTGAAGAACTGCAGCAGATACAGTGCCATCCGCTGTGCCAGCGCAGTGCCCAGGTCCTCTGTGGAGCTGCAGCAGGCCAGACACACCCAGCCAGCTCCTGCACCGGAGCCTGAACACAAGAAATCCACCACCAATGGAGATGCTACTCCGGCTTCCAAACCTTCCACCAAGCCACAGAAAAGCATCATGGGAATGTTTGCAAATAAGAGCGCTCTTAAGAACCAGGACAGTGGTAAAGAGGTGAAGTCGGAGCAGAAGGAGGATGCACCTGTGgTCGATGAGCCCAAAAGCAAACCAGCTGCAAAAGCCAACCCTATGATGAACTTCTTTGGCACTCAAGCAGCAAAGAAAACGGTGAAGCAGGAGGAAGCagctccatcatcatcatcatcctcagcAGAGCAGCGGCGGCCCAGTTCACAGCCGGAGGAAAcgcacgctgctgctgctgctgctgctgctgctgctgtggagcCGCCCAAAAACTCCAAGAAAGACTCCAGGAGCAAAACCAAGCGAATGGAGGATTCTGACAGCGAGGAGGagaaaatggacaaaaaaaagagacggCGGATTAAGAAGCCTGAACCAGACAGCAGCGATGAAGATGTCATTCCAGATTCCCCACAGCAGATGGAGACAAGAGAAGCGTCCCCAAGTCCTAAGGAGGAGGTGGAGCCTGTTTCACAGTCACATGGAAACTGTGAGATGAAGACGAGGAAGAGGAGACGCGTCCTGAAATCTCGTACCTTTGTAGACGATGAAGGATGCATCGtGACAGAGAAAGGCTATGAGAGTGAATCGTACTCTGAAGCAGAGGACGACGTTCCCAAAGATCCCATCCCTGCAAAACGACCGGCAAGTAGCAAACCGGACGAGAAGAAAAGTCAAAAGAAAGCGTCCGCAAATTCAAATAAAGGAACTAAACAAGCTTCCATCATGGGATTTTTCCAAAAGAAATGACGGGGGGACCGCGTCGGACACTTGCATAGGCGCCCGAGGGACAAAAAGCACTGCTGGAGACTTTCTCTGACCGTCTTGAGATAAAACTGAAACGCATCGTGTTGACAAATGGGGACTGCAAATCACTTCTCGAAAAGGACTTCAACTACACGTACGGGTCAATCGGGATGAAAACCAACTCGATTTTCACCTAGCCAGCTGTGAACACATGCTCTActcaataaatataaaatgctGAAACTTA

Function

symbol description
pold3 Predicted to contribute to DNA-directed DNA polymerase activity. Predicted to be involved in DNA strand elongation involved in DNA replication; DNA synthesis involved in UV-damage excision repair; and nucleotide-excision repair, DNA gap filling. Predicted to act upstream of or within DNA replication. Predicted to be located in nucleus. Predicted to be part of delta DNA polymerase complex. Orthologous to human POLD3 (DNA polymerase delta 3, accessory subunit).

NR:

description
DNA polymerase delta subunit 3 isoform X2

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K03504 POLD3; DNA polymerase delta subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816721.1 True 1670 mRNA 0.49 12 36449037 36463662
XM_039816722.1 False 1667 mRNA 0.49 12 36449037 36463662

Neighbor

gene id symbol gene type direction distance location
LOC120567707 LOC106910133,LOC107834262,LOC106939220,LOC107373952,LOC104944801 coding upstream 1005224 35431679 ~ 35443813 (+)
LOC120567912 NA coding upstream 1186135 35261558 ~ 35262902 (+)
LOC120569116 LOC107667722 coding upstream 1280321 35165658 ~ 35168716 (+)
LOC120568812 LOC102310619,LOC100692846,LOC108280567,LOC105903927,LOC106524909,LOC108427173 coding upstream 1624216 34809892 ~ 34824821 (+)
trnam-cau_26 NA coding upstream 1672888 34776078 ~ 34776149 (+)
LOC120567713 LOC107092464,LOC101065262 coding downstream 102099 36565761 ~ 36583870 (+)
LOC120568503 LOC100700741,LOC103361717,LOC101470268 coding downstream 124992 36588654 ~ 36620596 (+)
LOC120568504 LOC103361716 coding downstream 160415 36624077 ~ 36710812 (+)
LOC120568506 NA coding downstream 273486 36737148 ~ 36747668 (+)
LOC120568209 NA coding downstream 380349 36844011 ~ 36844650 (+)
G120714 NA non-coding upstream 44272 36404553 ~ 36404765 (+)
trnal-caa_4 NA non-coding upstream 199510 36249445 ~ 36249527 (+)
trnal-uaa_9 NA non-coding upstream 206433 36242522 ~ 36242604 (+)
trnal-caa_3 NA non-coding upstream 206768 36242187 ~ 36242269 (+)
trnal-uaa_8 NA non-coding upstream 207219 36241736 ~ 36241818 (+)
G120796 NA non-coding downstream 355901 36819563 ~ 36819774 (+)
LOC120568212 NA non-coding downstream 400131 36863793 ~ 36866140 (+)
LOC120568213 NA non-coding downstream 407689 36871351 ~ 36875394 (+)
G120842 NA non-coding downstream 625788 37089450 ~ 37090881 (+)
G120860 NA non-coding downstream 672697 37136359 ~ 37136750 (+)
G120717 NA other upstream 42348 36406121 ~ 36406689 (+)
G120716 NA other upstream 43264 36405240 ~ 36405773 (+)
LOC120568940 NA other upstream 807004 35594878 ~ 35642033 (+)
pde4ca pde4c,LOC101063915,LOC100693394,LOC102791393,LOC102313416 other upstream 1757417 34624276 ~ 34691620 (+)
pik3r2 pik3r2,LOC102792547,LOC100693657 other upstream 1841281 34569394 ~ 34607756 (+)
LOC120568208 LOC103361715,LOC100701557,LOC100700197,LOC101469035,LOC102215562,LOC102289753 other downstream 416256 36879918 ~ 37087443 (+)
G120914 LOC103396775 other downstream 839232 37302894 ~ 37306014 (+)
LOC120568367 LOC103371210,LOC101487706,LOC100534480,LOC102208811,LOC102309261,LOC104937382,LOC106522909 other downstream 1525903 37989565 ~ 38019068 (+)
G121058 NA other downstream 2292022 38755684 ~ 38755931 (+)
G121171 NA other downstream 2928310 39391972 ~ 39392776 (+)

Expression


Co-expression Network