LOC120568979 (LOC102307644)


Basic Information

Item Value
gene id LOC120568979
gene name LOC102307644
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 7388491 ~ 7466201 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816756.1
TAAAGAGAGCTGAGAGAATACACAGAGAAGAGAGTCGAAGAGAGGGAAAAGGGCAGATGGAGCGTGCTTTTAGTTCAACAGGGTGAACTAATGGAGAGAGAAATCGCCACGGAGAGTTACAGGAAATATGTGGACTTTAGTCTACTCAGCAGCAGCTCGGAGGGACACTGAGAGGCTTGTGTGAGGTGTTAAAGCTGAGGACTGAAGTGAAGAGAAGACAAGCGGGTCATCTTTGTTCCTCTGCAGACAAACTCCAATATCACCTGgatatcacaaaaacagaccAAAAAGGTTTTACTCAAAACACAAGCCCTTTGACGGAACCTCAGTCAACATCACACCAAAGATTTCACAGAGTGCTTTATCCTACATAATGATCTTCAGTAACTCTCACACTTCAGCAAGGATAGCCCATTAATAGTATCCTCTCATCATCTTGGATTATATTGGAATTTAAACACTTTGTCCGATGCTTACCTCCAGGACGAATCCAGTTTTGGATGCATGTCCATTTCCAACCTAGAAATAGCCAACTTTTGTAAGTTTTCACTAGCTTTTTTTAGCAGCGACACTCCCTGATGATCACAAGGGAATATGTCATTGTGTTTCTGGTGGGCTCCTGTTTCCTGTTGGACTACAGCTCCCAAATCCCCCTGCAGACTCTGCTCCCGAGCAGAACTAAGGCTGGAGTGATGTCAGCCAGGGGAGGGACTGGAGGTAAGACTGTAAGAGCATCTTTTGGTGAATGGACATCCTCAGAGGGCAGGACGAGGCTAAGGAGACATGGGAGAACGAGGGTCCATCGTATTAAACGAGGATGGGTCTGGAACCAGTTCTTTGTCCTGGAGGAGTACATGGGATCTGAACCACAGTATGTTGGAAAACTCCACACAGACATGGACCATGGAGACAGTGCAGTCAAGTACACTCTGTCAGGAGAAGGAGCCGGCTCCATTTTTACCATCGATCACATCACAGGCGATATACATGCACTGGTGGGGCTTGACAGGGAGGAAAAGTCCTACTACACGTTGAAGGCCCAGGCTGTTGACATCCACACAGGCGTGCCTCTGGAGCCCCAGTCTGAGTTCATCATCAAGGTGCAGGACATCAACGACAATGAGCCACGATTCCTCGATGGTCCGTACAGCGCCAGTGTCCCCGAGATGTCTCCAGCAGgaaccTACGTCACACAGGTGACCGCAACAGATGCAGATGACCCCACATATGGCAACAGCGCACGCATCGTCTACAGCATCCTGCACGGCCAGCCATACTTCTCTGTGGACCCCAAGACAGGAGTGATCCGGACAGCTCTAGCCAACATGGACCGCGAGGTGAAAGGGGAATACCAGGTTCTTCTCCAGGCCAAGGACATGGGCGGTCAGCTGGGGGGGCTAGCCTCCACCACCAACATCAACATCAGCCTCAGCGACGTCAACGACAACCCACCGCGCTTCGCAAAGAGTATTTTCCATCTACGGGTGCCAGAGTCGGCAGCAGTTGGCTCAGCAGTAGGCCGGATTCGAGCTCACGATCTGGATGCTGGCAGCAATGCACAGGTGGATTATGCCATTGTTCCAGGAGATGAGGGCAACATGTTTGATATCATCTCTAATGGCCAAAGTCAAGAGGGAGTTGTAGTCCTGAAAAAGACTCTTGACTATGAGACCAAGAAGTCCTACACCTTCAAGGTGGAGGCGTCCAACGCACACCTTGACCGCCGTTTCCTCCACCTGGGGCCCTTCAAGGACTCAGCGACAGTCAAGGTAAATGTCCTGGACACAGATGAGCCTCCTGTCTTCACCAAGGCGTCCTACACCATGGACGTGTACGAGGACACGCCCCCAGGAACCATCATCGGCTCCGTGACGGCTCAGGACCTGGATGCCAGCAGCAGTGCTGTCAGGTATTCCTTGGAATGGCAACCAGAGTCTGACAGCTGTTTTGACATTGACACTGTTGAAGGAACCATTTCCACTAATGAATACCTGGACAGAGAGACAGCTGTTCAGCACAATATCACTGTAGTGGCAACCAAAGTCAACAACCCTCTGCTGTCTGCCAAAGTGTCCGTGAAAGTCACCGTCCTGGATGTAAACGAGTTCCCTCCTGAGCTGGCGGTTCCTTCAGATACCTTTGTCTGTGAAAACTCCAGAGTGGGACAGGTGATCCAGACGGTCAGCGCTGTGGACAAGGACCTTCCTCCTGTCGGCCAGAGGTTCTTCTTCAAGTCCCCCAGAGAGCTTCACAACAGAAACTTCACTGTTCGAGATTTTGGAAACAACACCGCTGGCATTGTGACTCGACGCACAGGCTTCCAGCGGCGGCTGCAGGACGTCTATGTTCTTCCTGTCGTGGTTGAAGACAGTGGTTACCCTGCCCAGAGCAGCACAGCCACCCTCACCGTCCGAGTGTGTTCCTGCGAGGCCGGAGGCTCGCTGCTGACCTGCTCGGCCGAGGCCATCTTCCTGCCCGTGGGCCTCAGCACTGGAGCTCTGATGGCTATTCTGCTATGTGTAGCTCTGCTGATTGTCATGGCAGCATTATACATGGGCCAGAGGCGccacaaagagaaagagactcTGATGACATCGAAAGAGGACATCCGCGATAATGTCATTCACTATGACGACGAGGGCGGCGGCGAGGCGGACACTCGGGCCTTCGACATGGGCACTTTACGCAACACGCACTCCCAGCGCACGAGCACTCATAGCAGCACCTCcaagaaggaaaaaaatggCTACGGAGACGGGATTCTGCTGCATCTCAGCAGCCGCTGCGACGACGTCAGGTCACCCGACATCCATCGGCAAACAGCCAGTGTCATCGGCGCCGCGAACGACAAGGCCCCGCCCCCTTCCCGTGGCAAAGTGACTGATGGCGACGCCGAACTGATCAGGGAGTTCATCGCGCATCGGCTGGAGGAGAGTCAGCAGGGTTACGCTGCCCCACCCTACGATTCGCTGGCGACCTACGCCTACGAGGGCGAAGGCTCGGTGGCTGGCTCGCTCAGCTCCATAGAGTCATGGGTAATTGACCCTTCAGAGGATTTTAGCTCCCTCGGCGACTGGGGACAACCGTTCAAAACGCTGGCTAGCATCCTGGACAGACAGCCGCCTACTCTGACTGAGGAGAGCTGAGAGGAAGCTGGACAGCAGAGAGAATTTTGGGAGGCCATCTCGGAATTGGCTTTCTTTTttagacatgtttttttttttactgtgacaGGCACTGGCTAGAATGATGTGAGGAATTTTTTTCTAGAAAGCTGTCCATGTGAAGTAGAGTTGTGGACCGGTTAGCGAGAGAGCGGATAATCTAGCTACAGGTGCGTGGAAAAGGTCAACTTGATAGCTCCTCAAAGTGCCTGAGGTATTAtgtgtttacatgtattttaatttatgttacttaataaaaaaatatctccatctgatgtgattTCCAACATCAGATCCATAA

Function

NR:

description
PREDICTED: cadherin-12-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816756.1 True 3465 mRNA 0.52 13 7388491 7466201

Neighbor

gene id symbol gene type direction distance location
rnf2 rnf2 coding upstream 385458 6989501 ~ 7003033 (+)
LOC120568554 NA coding upstream 642880 6744730 ~ 6745611 (+)
LOC120568642 dip2c coding upstream 816145 6372433 ~ 6572346 (+)
LOC120568706 larp4b coding upstream 1036750 6302295 ~ 6351741 (+)
trnas-uga_21 NA coding upstream 1147588 6240822 ~ 6240903 (+)
LOC120568864 LOC103365115 coding downstream 22272 7488473 ~ 7614340 (+)
LOC120568159 NA coding downstream 164454 7630655 ~ 7730468 (+)
LOC120567733 en2,LOC103370758,LOC106578606 coding downstream 326462 7792663 ~ 7799491 (+)
cdc14aa LOC104931871,LOC103370748,LOC100703039,LOC108411489 coding downstream 577803 8044004 ~ 8062100 (+)
blvra blvra coding downstream 698205 8164406 ~ 8175954 (+)
G112686 NA non-coding upstream 222126 7166162 ~ 7166365 (+)
G112675 LOC104926815,LOC103366829 non-coding upstream 306903 7076609 ~ 7081588 (+)
G112674 NA non-coding upstream 329739 7058427 ~ 7058752 (+)
G112657 LOC103370293,LOC103129992,LOC105922680 non-coding upstream 372635 7013702 ~ 7015856 (+)
G112653 NA non-coding upstream 381527 7006746 ~ 7006964 (+)
G112743 NA non-coding downstream 268524 7734725 ~ 7735259 (+)
G112747 NA non-coding downstream 273680 7739881 ~ 7740113 (+)
G112749 NA non-coding downstream 275494 7741695 ~ 7743301 (+)
G112775 NA non-coding downstream 369402 7835603 ~ 7836850 (+)
G112777 NA non-coding downstream 389498 7855699 ~ 7855985 (+)
G112670 NA other upstream 352791 7035027 ~ 7035700 (+)
G112655 NA other upstream 379334 7007242 ~ 7009157 (+)
LOC120568216 NA other upstream 439361 6890987 ~ 6949130 (+)
LOC120568557 NA other upstream 514677 6872325 ~ 6873814 (+)
G112562 NA other upstream 617579 6741101 ~ 6770912 (+)
dnai4 NA other downstream 419297 7885498 ~ 7903922 (+)
G112932 NA other downstream 843649 8309850 ~ 8313076 (+)
LOC120568257 LOC102194642,LOC101465810,LOC102289180,LOC103366014,LOC103129983,LOC107384349,LOC103396642,LOC108246689 other downstream 940728 8406929 ~ 8510408 (+)
atg10 atg10 other downstream 1242460 8708661 ~ 8715271 (+)
LOC120568415 LOC103370799,LOC104931865,LOC101476899,LOC102794599,LOC102300092 other downstream 1323008 8789209 ~ 8809459 (+)

Expression


Co-expression Network