zgc:153615 (schip1,LOC104951462,LOC103396042,LOC100710109,LOC101472499)


Basic Information

Item Value
gene id zgc:153615
gene name schip1,LOC104951462,LOC103396042,LOC100710109,LOC101472499
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 24894555 ~ 24906946 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816771.1
caCACCACTGAAACTAAGCCACACGTTGACGACAGAAATGCTGGTCTTTGAAAGCAAGGACGCACGTCTGTATTTTTTTCCTATTCGTTTTCTTTTGCGTTAGTCAGCTGGAATTATGGAGCACTGAGCCAAGGATAAGAACTTTTATATAGAAGAGCAAGAAATCCTAAAATCCATCCTTTGGTGGCCATCGTCTGTCAATCGTGGGAGAATCTATTCTCCTTTTATGCCACACTGTGCTTATCTCTGTTTTGTTatgattgaattgaatttttatTTCAAGTATCTTGAGAACTCTGCACTTTACAGTGAAGTTTGTCTTTATGGGGGATTATGATGTGGACatggatgatgaagaggagggacaGGTGTTCATGAGAAAGGCCACAACAGGCCATTGGTGGGAGGACTGTGGAGATGATGGCAACTGTGACACACAACaccagagaggaggaagaggctgCATGGTAAACAGCCGCAGTTGGGCCGAGGAGCTCCAGGATATCTTTGCACCACAGGCTGAAGACTGTTACAGTGGAGGGCGAACCAGACTGTCCAGCATCTCTGCCCAGAGGAATGAGAGAGAGTGCATCAGGCAGAAACTTGCCCTTGGCAGTTTCTATGACGACGAGCCAGTCATCTATACCAGCTGCAGCAAGAACGGCCTATCCTCCCGACTGCAGAGTGGGGTGAACCTGCAGGTGTGTTTTGTTAATGACAGCAGCAGTGACAAAGACAGCGATGCTGAGGACAGTAGGACAGAGACCAGTCTGGACACACCGCTGTCACCTGTGAGCAAGCAGAGCTCATCGTTATCGGACCGGGACACGGCGGAGGAAGACTCAGACCCGTTAGATGACTTCGGCGGGTTCTGGCGGGTGCAGCGCAGGCTTCAGGAGGAGGCCCGGGTGGCGCTAGCTCTGGCTCGACCCATGGCCCGTAtgcaggtggaggtggagaggcAAATCCAGCTGCACAGACGTTCACCTGTGGCTGACTTGCTTCCCCATCTGCCCCACATCAGTGAGTGCTTGATGAAGAGGAATCTGAGGCGAGGGGACATGAGGGACATGAGTCTGGGACAGCTGCAAGTCATCACAAATGACTTACACTCACAGATTCAGAGTCTAAATGAGGAGCTGGTGCAGTTGCTGTTAATGAGGGATGAGCTGCATGTGGAGCAGGACGCCATGCTGGTGGACATAGAGGACCTCACCAGGCATGCTCACAGCCATCAGCGGCACCAAGCAGAGAAAGCCATCTCGAAATAAACACCCCGACTACACGTGTGTCCGTCTGCACGCCATCTTACCTCCCGCTCCATGGACTGTCACCAGTGTTACTAATAAAACCCCATCTGTGCTGACTGTTTCTGGAGAAATGAAAATACCATGTTAGTGTAAtattaacacacagacacaccaaatAATGTATTGCACCACAGGATGTTGTCGAAGGACAGAGGACATCTAAAAGAAGCTGAGCTGCTTTCAGTGTGGACACAGTTGACTTTGTGCAGGCTTTTCACTTCCACTCAGCATGATTACTCATGCTATATTTTATAGAATTAGGGGAATCCTCGTACCGTAATTGCATCCCCTAACCCTGATTTACCTCTTCATGATTTTGCACGGTACACTCATGTATGTTAATGCTGGGCTGAAGAGAGGGCCTGCACGCCTTGTTTCTCCATTATCTGAAAAAGGAGGATGACTTCTAGGGGACCAGCCTGACTGAACTTTTGTCTTAATAATAATCAAGAGGATTAGTCAGTTCATATGTAGACATGCTCTGTTCCCCTGTTTATCATCACTTTCACTAGGAGCATCGCGTTATTTCTGTTTCACAATGGGATTcactataaaataataataataataacaaattcaGTATAAAACTCTGAGCTGTTGCAATAGAAAATGATGAACAATATGTGCTGATTTGCAGCTTAGCTTCACAGTGGTGTTTGTATGCTGCAGCAGCTTCACAGAGGTCTTGTAATTTGATAGCTGCTACAGTTTCCACCTGCTTTTAAAGATGCATTTAGAGCTTTACTGGACAACATTTTGAACTTTATTAGACAAATTTGTATTTGTCAAATGCTTTAATTTACTCCGTACAATAGACAAAATGACAAGATGTGGGTTAAATAATTATATTGGTTAATACACAGGGATAGAAAAAGCAAAAGTCGAGGCATGACAGCCCCGAAATAGAAATATGCAGTCATTTTTGGTATGTTCAATTTACTAATGCTAAAAAAGGGTAAACGTAAAACaaatatatgaataaatcacagcCTAAACACATATCTATTTTATCTGTCCAGAGGGTTTatggacatactgtatgtaaatgttaaaagacactttattaaaaagtatGAAGAACATGCCTTGTTGTCTGGCTGTTTTCACTTTCAGCTTTTGAAGAATGTTATTTAACACAAAGTCAAACTTTCTTTTTCTAATATATGCTTCATTGATAAATGTACTATATAAtgattgtaaaaacaaaactccAGTAATAAATGTTTGAAGTGTG
>XM_039816772.1
TATATGAAAGGGTCTCCTGGGTCTAGCTTCACTGCAGTGTAGAGAAGGGCAGGGCGGCTGTTTCAGTACGATGCGCTGAAGGATGGTGCACCAGGAGAAACGCGTTTACCAGGCCCAGAGGAATGAGAGAGAGTGCATCAGGCAGAAACTTGCCCTTGGCAGTTTCTATGACGACGAGCCAGTCATCTATACCAGCTGCAGCAAGAACGGCCTATCCTCCCGACTGCAGAGTGGGGTGAACCTGCAGGTGTGTTTTGTTAATGACAGCAGCAGTGACAAAGACAGCGATGCTGAGGACAGTAGGACAGAGACCAGTCTGGACACACCGCTGTCACCTGTGAGCAAGCAGAGCTCATCGTTATCGGACCGGGACACGGCGGAGGAAGACTCAGACCCGTTAGATGACTTCGGCGGGTTCTGGCGGGTGCAGCGCAGGCTTCAGGAGGAGGCCCGGGTGGCGCTAGCTCTGGCTCGACCCATGGCCCGTAtgcaggtggaggtggagaggcAAATCCAGCTGCACAGACGTTCACCTGTGGCTGACTTGCTTCCCCATCTGCCCCACATCAGTGAGTGCTTGATGAAGAGGAATCTGAGGCGAGGGGACATGAGGGACATGAGTCTGGGACAGCTGCAAGTCATCACAAATGACTTACACTCACAGATTCAGAGTCTAAATGAGGAGCTGGTGCAGTTGCTGTTAATGAGGGATGAGCTGCATGTGGAGCAGGACGCCATGCTGGTGGACATAGAGGACCTCACCAGGCATGCTCACAGCCATCAGCGGCACCAAGCAGAGAAAGCCATCTCGAAATAAACACCCCGACTACACGTGTGTCCGTCTGCACGCCATCTTACCTCCCGCTCCATGGACTGTCACCAGTGTTACTAATAAAACCCCATCTGTGCTGACTGTTTCTGGAGAAATGAAAATACCATGTTAGTGTAAtattaacacacagacacaccaaatAATGTATTGCACCACAGGATGTTGTCGAAGGACAGAGGACATCTAAAAGAAGCTGAGCTGCTTTCAGTGTGGACACAGTTGACTTTGTGCAGGCTTTTCACTTCCACTCAGCATGATTACTCATGCTATATTTTATAGAATTAGGGGAATCCTCGTACCGTAATTGCATCCCCTAACCCTGATTTACCTCTTCATGATTTTGCACGGTACACTCATGTATGTTAATGCTGGGCTGAAGAGAGGGCCTGCACGCCTTGTTTCTCCATTATCTGAAAAAGGAGGATGACTTCTAGGGGACCAGCCTGACTGAACTTTTGTCTTAATAATAATCAAGAGGATTAGTCAGTTCATATGTAGACATGCTCTGTTCCCCTGTTTATCATCACTTTCACTAGGAGCATCGCGTTATTTCTGTTTCACAATGGGATTcactataaaataataataataataacaaattcaGTATAAAACTCTGAGCTGTTGCAATAGAAAATGATGAACAATATGTGCTGATTTGCAGCTTAGCTTCACAGTGGTGTTTGTATGCTGCAGCAGCTTCACAGAGGTCTTGTAATTTGATAGCTGCTACAGTTTCCACCTGCTTTTAAAGATGCATTTAGAGCTTTACTGGACAACATTTTGAACTTTATTAGACAAATTTGTATTTGTCAAATGCTTTAATTTACTCCGTACAATAGACAAAATGACAAGATGTGGGTTAAATAATTATATTGGTTAATACACAGGGATAGAAAAAGCAAAAGTCGAGGCATGACAGCCCCGAAATAGAAATATGCAGTCATTTTTGGTATGTTCAATTTACTAATGCTAAAAAAGGGTAAACGTAAAACaaatatatgaataaatcacagcCTAAACACATATCTATTTTATCTGTCCAGAGGGTTTatggacatactgtatgtaaatgttaaaagacactttattaaaaagtatGAAGAACATGCCTTGTTGTCTGGCTGTTTTCACTTTCAGCTTTTGAAGAATGTTATTTAACACAAAGTCAAACTTTCTTTTTCTAATATATGCTTCATTGATAAATGTACTATATAAtgattgtaaaaacaaaactccAGTAATAAATGTTTGAAGTGTG

Function

symbol description
schip1 Predicted to be involved in positive regulation of hippo signaling. Predicted to be active in cell junction and plasma membrane. Is expressed in basal plate midbrain region; central nervous system; notochord; and retinal ganglion cell layer. Orthologous to human SCHIP1 (schwannomin interacting protein 1).

NR:

description
PREDICTED: schwannomin-interacting protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816771.1 True 2544 mRNA 0.44 8 24894555 24906946
XM_039816772.1 False 2090 mRNA 0.44 7 24896704 24906946

Neighbor

gene id symbol gene type direction distance location
LOC120568221 NA coding upstream 2116 24887761 ~ 24892439 (+)
LOC120568223 NA coding upstream 17596 24875001 ~ 24876959 (+)
kif2c kif2c,LOC101470919 coding upstream 32610 24853794 ~ 24861945 (+)
ptch2 ptch2 coding upstream 56861 24808244 ~ 24837694 (+)
eif2b3 eif2b3 coding upstream 97307 24759165 ~ 24797248 (+)
LOC120568308 NA coding downstream 891 24907837 ~ 24911335 (+)
LOC120568131 otol1,LOC104951468 coding downstream 30013 24936959 ~ 24939879 (+)
rc3h1b rc3h1 coding downstream 58719 24965665 ~ 24980880 (+)
extl2 extl2 coding downstream 85198 24992144 ~ 24996202 (+)
LOC120568127 NA coding downstream 179028 25085974 ~ 25113802 (+)
G117632 NA non-coding upstream 56326 24837956 ~ 24838229 (+)
G117547 NA non-coding upstream 337898 24556419 ~ 24556657 (+)
LOC120568139 NA non-coding upstream 555299 24337693 ~ 24339256 (+)
G117523 NA non-coding upstream 635724 24257554 ~ 24258831 (+)
G117488 NA non-coding upstream 724602 24169668 ~ 24169953 (+)
G117704 NA non-coding downstream 211285 25118231 ~ 25118502 (+)
LOC120568228 NA non-coding downstream 218885 25125831 ~ 25130929 (+)
LOC120568901 NA non-coding downstream 875229 25782175 ~ 25793191 (+)
LOC120568900 NA non-coding downstream 965383 25872329 ~ 25873402 (+)
LOC120568898 NA non-coding downstream 973558 25880504 ~ 25888841 (+)
selenot1a selenot,LOC103365166 other upstream 24468 24862996 ~ 24870087 (+)
LOC120569045 cacybp other upstream 218801 24667879 ~ 24675754 (+)
LOC120568789 kiaa0040,LOC102782613 other upstream 316243 24569528 ~ 24578312 (+)
LOC120569114 NA other upstream 839851 24049764 ~ 24054704 (+)
G117400 LOC104965054 other upstream 870896 24022441 ~ 24023659 (+)
G117664 NA other downstream 43622 24950568 ~ 24954247 (+)
fgf12a fgf12,LOC100711708,LOC108245531,LOC107083782,LOC107384013,LOC103396031,LOC103365152,LOC103148287,LOC101467833,LOC106535044,LOC102236041,LOC105935916 other downstream 80553 24987499 ~ 25044057 (+)
LOC120568894 LOC102789372,LOC104966552 other downstream 836381 25743327 ~ 25773468 (+)
LOC120568895 NA other downstream 866831 25773777 ~ 25793954 (+)
G117829 NA other downstream 922818 25829764 ~ 25830695 (+)

Expression


Co-expression Network