LOC120568999 (LOC104956575,LOC101467645)


Basic Information

Item Value
gene id LOC120568999
gene name LOC104956575,LOC101467645
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 12789847 ~ 12794774 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816780.1
AAAGTAACAACCTTTCATAACATGCATAACATGTAGGAACAACACACCTCACAGATTGTATTCATTTTACGGATGATTGAAATGTAAATTGTTTCCTTCAGGAGTTGCCGAGGGTTGAAACAAACTGCAGTGTGACCTGGGTGTCAGTTGGTacataacgttaacgttacattaaaCGGAGTTTAAGGAGTTGCCGAGGGTTGAAACAAACTGCAGTGTGACCTGGGTGTCAGTTGGTacataacgttaacgttacattaaaCGGAGTTTAAGATGGCTGCAGCTCTGTCTAACAGAGCGATAGGAGCCATTGTAGGATCAGCAGTTGCAGATGCAGCAGCGCAGCCCCTCCACTGGGTGTACGATCGGCAGAAGCTGCAGGGGATTCTGGCTCAGGATCCGAACCCTGAGTTCCGCCCTGAGTCGGCCAACCCTTTCTACAGGAGGCAGACGGGCCAGCAGAGCTGCTACGGAGACCAGGCCTTTGTCCTGCTGGAGTCCTTGTCCGAATGTGGAGGTCTAAATGTTGACGATCTGAAGCAGCGCACACTAAAATTCTTTGGGCCTGGATCAGAGTATGACACGCCTGTCAATGATCcttacagagagagaggagGGCCAAAACCTCAGCTGCCCATCGAGGGACCATGGAGACATGCGAGTTTAAAGAGCTTCCTGAAGAATGTGGATGCAGGCAAAGAGGAGACTGGCTGTGAGAGCGACTGTCAGATTGATGGAATAGCCAAACTGGCTCCTATAGTGGCTTTTTATGCAGGAAAATCTGACATGCTGGAAAAGGTTGAGCAGGCAGTCCGTGTCACCCAGAACAATGATGCATGTGTGGCAGACACTCTAGCAGCTGCAAGGTTTCTTGAGCATTTCATTCTGAATGGTCCTGATCCAAAAGCCTTGGACTCGGTGCTCGATCAGCTCAGTGACCCAAACCGAAAGCAGCCCCAGGATCTGGACAAAGCAGTCATTGGGCACATTCATCAGGTGAAGGAGACTCTATCAAAAACTCCTCAGGAGCTAATCCCCACTGTGTTTCCAAACACATGAGGTTTGCCAGGTGCATTCCAAGCAGCGCTGCATGGAGTCCTGACAGCCAAGCACTATGAGCAGGCTGTCAGAGATACAATTAGCTGTGGGGGTTGCACCTGTAGCAGAGGGTCCTTCATTGGAGCCTGTCTTGGGGCTCAGATTGGACTTGAGGGAATTCCAGCTTCGTGGATAACCAAAACCCTGCATTATGACTCAGTGTTGAAGCATGCCAAGAAGATAACCAAACACCACcaatagaattttttttctggAAGTGTTTACAATCTGAGGTGGCAaagaacaaaatgaaaaactgtTGTGCTTTCACAGAACACTGTATGAAGGTTCTTGTCTAAACTGTTGGACGGCAGGagcctgatgtttttgtctctggtAAAGTTAAACATGTTGGTTCAGATGTTCGTAACTGAGTTTTTCTGCAATAAAGTAatttggaaaaaatata
>XM_039816781.1
AAAGTAACAACCTTTCATAACATGCATAACATGTAGGAACAACACACCTCACAGATTGTATTCATTTTACGGATGATTGAAATGTAAATTGTTTCCTTCAGGAGTTGCCGAGGGTTGAAACAAACTGCAGTGTGACCTGGGTGTCAGTTGGTacataacgttaacgttacattaaaCGGAGTTTAAGATGGCTGCAGCTCTGTCTAACAGAGCGATAGGAGCCATTGTAGGATCAGCAGTTGCAGATGCAGCAGCGCAGCCCCTCCACTGGGTGTACGATCGGCAGAAGCTGCAGGGGATTCTGGCTCAGGATCCGAACCCTGAGTTCCGCCCTGAGTCGGCCAACCCTTTCTACAGGAGGCAGACGGGCCAGCAGAGCTGCTACGGAGACCAGGCCTTTGTCCTGCTGGAGTCCTTGTCCGAATGTGGAGGTCTAAATGTTGACGATCTGAAGCAGCGCACACTAAAATTCTTTGGGCCTGGATCAGAGTATGACACGCCTGTCAATGATCcttacagagagagaggagGGCCAAAACCTCAGCTGCCCATCGAGGGACCATGGAGACATGCGAGTTTAAAGAGCTTCCTGAAGAATGTGGATGCAGGCAAAGAGGAGACTGGCTGTGAGAGCGACTGTCAGATTGATGGAATAGCCAAACTGGCTCCTATAGTGGCTTTTTATGCAGGAAAATCTGACATGCTGGAAAAGGTTGAGCAGGCAGTCCGTGTCACCCAGAACAATGATGCATGTGTGGCAGACACTCTAGCAGCTGCAAGGTTTCTTGAGCATTTCATTCTGAATGGTCCTGATCCAAAAGCCTTGGACTCGGTGCTCGATCAGCTCAGTGACCCAAACCGAAAGCAGCCCCAGGATCTGGACAAAGCAGTCATTGGGCACATTCATCAGGTGAAGGAGACTCTATCAAAAACTCCTCAGGAGCTAATCCCCACTGTGTTTCCAAACACATGAGGTTTGCCAGGTGCATTCCAAGCAGCGCTGCATGGAGTCCTGACAGCCAAGCACTATGAGCAGGCTGTCAGAGATACAATTAGCTGTGGGGGTTGCACCTGTAGCAGAGGGTCCTTCATTGGAGCCTGTCTTGGGGCTCAGATTGGACTTGAGGGAATTCCAGCTTCGTGGATAACCAAAACCCTGCATTATGACTCAGTGTTGAAGCATGCCAAGAAGATAACCAAACACCACcaatagaattttttttctggAAGTGTTTACAATCTGAGGTGGCAaagaacaaaatgaaaaactgtTGTGCTTTCACAGAACACTGTATGAAGGTTCTTGTCTAAACTGTTGGACGGCAGGagcctgatgtttttgtctctggtAAAGTTAAACATGTTGGTTCAGATGTTCGTAACTGAGTTTTTCTGCAATAAAGTAatttggaaaaaatata

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: crystallin J1C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816780.1 True 1507 mRNA 0.47 11 12789847 12794774
XM_039816781.1 False 1421 mRNA 0.48 10 12789847 12794774

Neighbor

gene id symbol gene type direction distance location
tox4a LOC103360300 coding upstream 30578 12753035 ~ 12759269 (+)
chd8 chd8 coding upstream 37879 12730445 ~ 12751968 (+)
cbln12 cbln3,LOC103360302,LOC104927970,LOC101077223,LOC104956581 coding upstream 60928 12725612 ~ 12728919 (+)
trim110 cbln3,LOC102310989,LOC102795120,LOC102215561 coding upstream 64475 12720716 ~ 12725372 (+)
acin1a acin1 coding upstream 105151 12665232 ~ 12684696 (+)
eif2b5 eif2b5 coding downstream 629 12795403 ~ 12801070 (+)
LOC120567759 vipr1,LOC106517907,LOC107384262 coding downstream 18544 12813318 ~ 12836982 (+)
ctdsplb LOC103360289,LOC102790982 coding downstream 60328 12855102 ~ 12869142 (+)
oxsr1a LOC104927954,LOC103360287,LOC100697833,LOC102210831,LOC102290626 coding downstream 93769 12888543 ~ 12901425 (+)
gorasp1a gorasp1,LOC103360281,LOC104945829 coding downstream 166494 12961268 ~ 12966562 (+)
G113938 NA non-coding upstream 10449 12778340 ~ 12779398 (+)
G113852 NA non-coding upstream 162328 12626079 ~ 12627519 (+)
G113843 LOC104931181,LOC104949953,LOC107384241,LOC103360313 non-coding upstream 186925 12601183 ~ 12602922 (+)
G113811 NA non-coding upstream 433126 12356340 ~ 12356721 (+)
G113782 NA non-coding upstream 568163 12221376 ~ 12221684 (+)
G113956 NA non-coding downstream 66851 12861625 ~ 12874310 (+)
G114000 NA non-coding downstream 232305 13027079 ~ 13028170 (+)
G114008 LOC104953400 non-coding downstream 357325 13152099 ~ 13153594 (+)
G114033 NA non-coding downstream 401487 13196261 ~ 13198734 (+)
G114035 NA non-coding downstream 404994 13199768 ~ 13200746 (+)
ap1g2 LOC106903824,LOC103138413,LOC106934762,LOC101486457,LOC103478890,LOC100694377 other upstream 190007 12582642 ~ 12599840 (+)
LOC120568189 nop9 other upstream 623570 12157449 ~ 12166277 (+)
abhd4 abhd4 other upstream 661825 12122669 ~ 12128022 (+)
pkia pkia,LOC102780447,LOC102205080 other upstream 1443622 11332568 ~ 11346225 (+)
LOC120568835 NA other upstream 1903369 10885595 ~ 10886478 (+)
LOC120568152 LOC104963178 other downstream 106765 12901539 ~ 12907243 (+)
LOC120567760 LOC103360284,LOC108238605,LOC104963178 other downstream 116665 12911439 ~ 12919198 (+)
G113979 LOC104959684 other downstream 134441 12929215 ~ 12975637 (+)
LOC120569010 NA other downstream 157774 12952548 ~ 12960349 (+)
col6a1 col6a1 other downstream 215801 13010575 ~ 13074594 (+)

Expression


Co-expression Network