sdhc (sdhc,LOC103479501)


Basic Information

Item Value
gene id sdhc
gene name sdhc,LOC103479501
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 32118953 ~ 32124498 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816809.1
CAAGGATTTAATTTATGTAACCGGTCAGAACAACAACATCCGTCAACGTCACTTCCGTTCACCGCTTGTCAAACATGGCGCTGCTTCTAAGGACGTTGGCCCGACAGGGTGTCTGTCTCTCTAGACCCTGTGTTGCCCAGAGTGTCTTCTATAGACaTGCTGCTCCAATGGGAACCACAGCTAAGGACGAGATGAACAAGTTTTGGGCCAAAAATTCCAAATTAAACAGACCCATGTCTCCTCATCTCACCATTTACAAaTGGTCTGTCCCCATGGTGATGTCCATCACGTTCAGGGGAACTGGAGTGGGACTCAGTGGAGctATCTCAGCCTTTGCCTTGGCAGCGCTGGTATTACCGGAAAGTTACCCCTACTACCTGGACTTGATCCACTCGCTATACGTCGGCCCCTATCTCATTGGGTTGGCCAAGTTCGGCCTCGCCCTCCCTGTGTCTTTCCATACCTATAATGGCATCCGCCACTTGTGTTGGGACCTTGGCAAGGGCTTCAGAATCCCAGAGGTGTACCGCACCGGCTACACAGTTATTGGTCTGTCCATCATCACCTCCCTCGCACTGGCTTACCTCTGAGCAGAGAACGAGAAGAGATGAGCAGAAAGGAAGGGAGAGGGGGAAGTCAACGGGAATGTGGACTGGATTCACTGTGGCAGTTTTGTGCATTTGTTCTGGTTTCATCAAAGTATTAAATAAAGGATTATATTATACTGTA

Function

symbol description
sdhc Predicted to enable electron transfer activity; metal ion binding activity; and succinate dehydrogenase activity. Predicted to be involved in mitochondrial electron transport, succinate to ubiquinone. Predicted to act upstream of or within tricarboxylic acid cycle. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone). Human ortholog(s) of this gene implicated in Carney-Stratakis syndrome; gastrointestinal stromal tumor; and paraganglioma. Orthologous to human SDHC (succinate dehydrogenase complex subunit C).

NR:

description
PREDICTED: succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like isoform X2

GO: NA

KEGG:

id description
K00236 SDHC, SDH3; succinate dehydrogenase (ubiquinone) cytochrome b560 subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816809.1 True 729 mRNA 0.49 6 32118953 32124498

Neighbor

gene id symbol gene type direction distance location
LOC120568430 LOC103373937,LOC105937883,LOC100694151 coding upstream 3006 32075076 ~ 32115947 (+)
mpz mpz,LOC102776110 coding upstream 67518 32031652 ~ 32051435 (+)
lig1 lig1,LOC102777267 coding upstream 102601 31942203 ~ 32016352 (+)
LOC120568893 LOC100705068 coding upstream 179475 31929145 ~ 31939478 (+)
eif3f eif3f coding upstream 253718 31860730 ~ 31865235 (+)
trnar-ucu_14 NA coding downstream 1859 32126357 ~ 32126430 (+)
kirrel1b LOC101488125,LOC102302400,LOC100705859 coding downstream 107710 32232208 ~ 32325647 (+)
LOC120568561 NA coding downstream 222791 32347289 ~ 32355822 (+)
LOC120568571 NA coding downstream 312960 32437458 ~ 32441095 (+)
LOC120568570 NA coding downstream 348122 32472620 ~ 32486408 (+)
LOC120567918 NA non-coding upstream 59580 32056055 ~ 32059373 (+)
G119332 NA non-coding upstream 203352 31849440 ~ 31915601 (+)
G119328 NA non-coding upstream 275982 31838382 ~ 31842971 (+)
G119306 LOC103370525 non-coding upstream 387663 31730145 ~ 31731290 (+)
G119285 NA non-coding upstream 475755 31641354 ~ 31643198 (+)
G119398 NA non-coding downstream 66 32124564 ~ 32124915 (+)
G119409 NA non-coding downstream 216627 32341125 ~ 32341363 (+)
G119415 NA non-coding downstream 223623 32348121 ~ 32349713 (+)
G119416 NA non-coding downstream 240068 32364566 ~ 32364768 (+)
G119417 NA non-coding downstream 248065 32372563 ~ 32403711 (+)
LOC120567694 LOC103373937,LOC106569580,LOC100136182,LOC107383461,LOC106960171 other upstream 47641 32067563 ~ 32071312 (+)
pip4p1a tmem55b,LOC101161334 other upstream 204249 31888908 ~ 31914704 (+)
dnaaf6 pih1d3,LOC106903480,LOC103138000,LOC103138005,LOC103137996,LOC106960166 other upstream 249458 31865755 ~ 31869495 (+)
G119257 NA other upstream 658045 31459864 ~ 31460908 (+)
G119123 NA other upstream 883388 31198960 ~ 31235565 (+)
cadm3 cadm3 other downstream 3960 32128458 ~ 32226483 (+)
LOC120568569 NA other downstream 328207 32452705 ~ 32471570 (+)
G119582 vangl2,LOC103137974 other downstream 644209 32768707 ~ 32769852 (+)
G119584 vangl2,LOC102795188 other downstream 650576 32775074 ~ 32775682 (+)
G119585 NA other downstream 656490 32780988 ~ 32781471 (+)

Expression


Co-expression Network