rab6bb (rab6b,LOC104929189,LOC105028793,LOC104957876,LOC103360106,LOC100708038,LOC101156359,LOC106534664)


Basic Information

Item Value
gene id rab6bb
gene name rab6b,LOC104929189,LOC105028793,LOC104957876,LOC103360106,LOC100708038,LOC101156359,LOC106534664
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 24209550 ~ 24216455 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816817.1
AGGAGGATGCTGAGCTGCATTCCCATCATTctgtgaggagaggaggatCCCCCTGCGCACCCACAACGGAGGAGACATCGAGCGATAAGAACATATAAAAATAATCCAAGTTGAGCTCTTTATCTGCTACCATGTCAGCTGGAGGAGATTTGGGGAACCCCCTGAGGAAATTTAAACTCGTATTTTTGGGAGAGCAGAGCGTGGGGAAAACATCTCTCATCACTAGATTCATGTACGACAGTTTCGACAACACGTATCAGGCAACCATTGGAATTGACTTTCTATCAAAGACAATGTACCTGGAAGACCGAACAGTAGGATGCATTGTAAGGCTGCAGCTGTGGGATACTGCTGGACAAGAGCGCTTCAGGAGTCTTATCCCCAGCTACATTCGAGACTCCACAGTGGCTGTGGTCGTCTATGACATTACAAATGTGAACTCATTCCAGCAGACCTGCAAATGGATTGATGATgtcaggacagagagaggaagtgatgtaattatcATGCTAGTCGGCAACAAAACAGATCTGGAAGAGAAGAGGCAAATCATGATTGAGGAAGGAGAGCAAAGAGCCAAAGAGCTGAACGTCATGTTCATTGAGACCAGTGCCAAGACAGGCTGCAATGTCAAACAGCTGTTTCGTCGGGTTGCAGCAGCCCTACCTGGCATGGAAAGCTTGGACGATGCAAATCCTGAAGGCATGATCGACATTAAGCTGGACAAACCGGCAGAGCCTACTGTCCCCGAGGGCGGGTGCTCATGTTAATGCAGAGCTGAAATCGGACAGCTCCTTTCACACCATAGGCTTGTTGTGTTGCTTACTACTGGTTAGCTTCCAGTTGACTTCTCTAATTGGATATAGGATGTGGGCCTTGTATCTGATTGGACAAATCAAATGTTATCTTTCAGTCTTGTTCAGTTGTAAAATATTGTATACTTTGTCAATATGTAAGTGACTGGaggagaaaagggaaaaaaaacaacaaccaaatgttgaaatgaaaaCGAACATAAAACAGTTTTGGAAAAATGAAACAGGAGAAAAAACGGGACAACCAACGGAATTCTTTTCGCtgttatgttttgtattttttatatataaaaagggAAAGCACCAAAAATGATGCCTAAACATAGAAGGAGAAAAAGTCGGGGGGTCGGCCATTTTTCTAGATGGCCGAACACGTTTGAATGTCTGCAGCACGCATGCACGTTGATCTGatctttgacctttgacctttggcCTGCCTTCCAGGGTCTCCGCACTCTGGTAGGAGGTTGACTATCTTAGAATGTTTTATAGCATCTCTCTATAGCATCTCATGACAAAATGTATCTCATTTGATATTCCCACAAGAGTCAACTTCCAGTAGGTTCACCTGACAGTAGCTGTGACAATGTGACACTCTATCTCTCTATAGGTTtaacttttataaaacaaactgtactgtggtttaaaaaaaaaaagaagtaataaaAAGACAACTTACTATCACAACTCACCCTAACCCTTCAACcactcctctccttctcctcctttcctcaaaccctctctcctcctcctttcccgTCCCTTCATCCCGGTAATACACATATAACGATCCACTGTAATGCACTGCACTgtatataataatgtaatatgtaTGTTGTGAACGTCCCTCTGTAGAAGTGGTCCTTGTTCACCAGTATGAATAATGTTATAATGTCTaatgataaataaattacagaTTAAAGGGCTTCACTCTCTTAACCATCAACATTTA
>XM_039816819.1
AGGAGGATGCTGAGCTGCATTCCCATCATTctgtgaggagaggaggatCCCCCTGCGCACCCACAACGGAGGAGACATCGAGCGATAAGAACATATAAAAATAATCCAAGTTGAGCTCTTTATCTGCTACCATGTCAGCTGGAGGAGATTTGGGGAACCCCCTGAGGAAATTTAAACTCGTATTTTTGGGAGAGCAGAGCGTGGGGAAAACATCTCTCATCACTAGATTCATGTACGACAGTTTCGACAACACGTATCAGGCAACCATTGGAATTGACTTTCTATCAAAGACAATGTACCTGGAAGACCGAACAGTAAGGCTGCAGCTGTGGGATACTGCTGGACAAGAGCGCTTCAGGAGTCTTATCCCCAGCTACATTCGAGACTCCACAGTGGCTGTGGTCGTCTATGACATTACAAATGTGAACTCATTCCAGCAGACCTGCAAATGGATTGATGATgtcaggacagagagaggaagtgatgtaattatcATGCTAGTCGGCAACAAAACAGATCTGGAAGAGAAGAGGCAAATCATGATTGAGGAAGGAGAGCAAAGAGCCAAAGAGCTGAACGTCATGTTCATTGAGACCAGTGCCAAGACAGGCTGCAATGTCAAACAGCTGTTTCGTCGGGTTGCAGCAGCCCTACCTGGCATGGAAAGCTTGGACGATGCAAATCCTGAAGGCATGATCGACATTAAGCTGGACAAACCGGCAGAGCCTACTGTCCCCGAGGGCGGGTGCTCATGTTAATGCAGAGCTGAAATCGGACAGCTCCTTTCACACCATAGGCTTGTTGTGTTGCTTACTACTGGTTAGCTTCCAGTTGACTTCTCTAATTGGATATAGGATGTGGGCCTTGTATCTGATTGGACAAATCAAATGTTATCTTTCAGTCTTGTTCAGTTGTAAAATATTGTATACTTTGTCAATATGTAAGTGACTGGaggagaaaagggaaaaaaaacaacaaccaaatgttgaaatgaaaaCGAACATAAAACAGTTTTGGAAAAATGAAACAGGAGAAAAAACGGGACAACCAACGGAATTCTTTTCGCtgttatgttttgtattttttatatataaaaagggAAAGCACCAAAAATGATGCCTAAACATAGAAGGAGAAAAAGTCGGGGGGTCGGCCATTTTTCTAGATGGCCGAACACGTTTGAATGTCTGCAGCACGCATGCACGTTGATCTGatctttgacctttgacctttggcCTGCCTTCCAGGGTCTCCGCACTCTGGTAGGAGGTTGACTATCTTAGAATGTTTTATAGCATCTCTCTATAGCATCTCATGACAAAATGTATCTCATTTGATATTCCCACAAGAGTCAACTTCCAGTAGGTTCACCTGACAGTAGCTGTGACAATGTGACACTCTATCTCTCTATAGGTTtaacttttataaaacaaactgtactgtggtttaaaaaaaaaaagaagtaataaaAAGACAACTTACTATCACAACTCACCCTAACCCTTCAACcactcctctccttctcctcctttcctcaaaccctctctcctcctcctttcccgTCCCTTCATCCCGGTAATACACATATAACGATCCACTGTAATGCACTGCACTgtatataataatgtaatatgtaTGTTGTGAACGTCCCTCTGTAGAAGTGGTCCTTGTTCACCAGTATGAATAATGTTATAATGTCTaatgataaataaattacagaTTAAAGGGCTTCACTCTCTTAACCATCAACATTTA

Function

symbol description
rab6b Enables myosin V binding activity. Predicted to be involved in Golgi vesicle transport; intracellular protein transport; and retrograde transport, endosome to Golgi. Located in Golgi apparatus.

NR:

description
PREDICTED: ras-related protein Rab-6B

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07894 RAB6B; Ras-related protein Rab-6B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816817.1 True 1767 mRNA 0.43 8 24209550 24216455
XM_039816819.1 False 1755 mRNA 0.43 8 24209550 24216455

Neighbor

gene id symbol gene type direction distance location
espnlb NA coding upstream 98 24200243 ~ 24209452 (+)
kif1ab NA coding upstream 11899 24171045 ~ 24197651 (+)
bokb LOC103360102,LOC100707238 coding upstream 49211 24152160 ~ 24160339 (+)
cdc20 cdc20,LOC102779045 coding upstream 67453 24138155 ~ 24142097 (+)
LOC120569088 NA coding upstream 119608 24083696 ~ 24089942 (+)
aire NA coding downstream 3782 24220237 ~ 24223598 (+)
amotl2b NA coding downstream 24251 24240706 ~ 24247620 (+)
LOC120568200 NA coding downstream 36933 24253388 ~ 24257335 (+)
LOC120568201 NA coding downstream 43008 24259463 ~ 24267286 (+)
LOC120568202 NA coding downstream 53229 24269684 ~ 24278078 (+)
G117488 NA non-coding upstream 39597 24169668 ~ 24169953 (+)
G117487 LOC104957881 non-coding upstream 39995 24164854 ~ 24169555 (+)
G117476 NA non-coding upstream 58779 24150458 ~ 24150771 (+)
G117406 NA non-coding upstream 165066 24043969 ~ 24044484 (+)
G117405 NA non-coding upstream 166009 24036655 ~ 24043541 (+)
G117523 NA non-coding downstream 41099 24257554 ~ 24258831 (+)
LOC120568139 NA non-coding downstream 121238 24337693 ~ 24339256 (+)
G117547 NA non-coding downstream 339964 24556419 ~ 24556657 (+)
G117632 NA non-coding downstream 621501 24837956 ~ 24838229 (+)
G117704 NA non-coding downstream 901776 25118231 ~ 25118502 (+)
LOC120569114 NA other upstream 154846 24049764 ~ 24054704 (+)
G117400 LOC104965054 other upstream 185891 24022441 ~ 24023659 (+)
hes6 LOC104918282,LOC104941260,LOC103366710 other upstream 295052 23912664 ~ 23914498 (+)
G117353 LOC103366712 other upstream 301149 23905870 ~ 23908401 (+)
G117319 LOC101487892,LOC104941256 other upstream 354393 23850879 ~ 23855157 (+)
LOC120568789 kiaa0040,LOC102782613 other downstream 353073 24569528 ~ 24578312 (+)
LOC120569045 cacybp other downstream 451424 24667879 ~ 24675754 (+)
selenot1a selenot,LOC103365166 other downstream 646541 24862996 ~ 24870087 (+)
G117664 NA other downstream 734113 24950568 ~ 24954247 (+)
fgf12a fgf12,LOC100711708,LOC108245531,LOC107083782,LOC107384013,LOC103396031,LOC103365152,LOC103148287,LOC101467833,LOC106535044,LOC102236041,LOC105935916 other downstream 771044 24987499 ~ 25044057 (+)

Expression


Co-expression Network