mcm6 (mcm6,LOC106569474)


Basic Information

Item Value
gene id mcm6
gene name mcm6,LOC106569474
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 13176825 ~ 13183207 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816866.1
GAGCAGTCACATCACTCCTGATTGGCTACAACCCAGAGAGCATTACCGATTGGACGAAAGCGGCGCGCCAAAGATCACGTGTCCCTCTTTTCGCGCGAAACTGTTGCTCTGTTGTCAGGACTTTTACAGCGTGCTGTGTCTGTCCGGAGAAGAGCGGTACGGCTCTGTGAATTTTCCCCCAAGTTTTTGAGTCTGTTATTCCAGTTTGACGGTGTTTCAGCATGGATGTTGCCACAGCAACTGCGGAGAATGCCGGAGAGATGGTGAAAGACGAGTTGGCTGAAAAATGCCAGAAGCTGTTCCAGGCTTTCTTGGAGGAGTTCCAGACCGGGGATGGGGAGGTGAAGTATGTCCAGGAGGCCGAGGAGCTGATCAGGCCTGAGAGGAACACGCTGCTGGTGAGCTTCACAGACCTGGAGGGCTTCAACCAGGAGCTGGCTACCACCATCCAGGAGGAGTACTACAGAGTTTACCCCTTCCTTTGTCGGGCAGTGCGCAACTTTGCTCGGGATCATGGGAATGTTCCTCTCAACAAAGAGTTCTACGTAGCCCTCGAGGATCTTCCCACTAGACACAAGATCCGTGAGCTGTCGTCCATGCGCATCGGCACCCTGGTGAGGATCAGTGGTCAGGTGGTGAGGACACACCCAGTACACCCTGAACTGGTGAGTGGCACCTTCCTGTGCATGGACTGCCAGGCACTGATCAAAGATGTCCCTCAGCAGTTCAAATACTCCCCACCAACCATCTGCAGAAACCCCGTCTGCAACAACCGCTCCCGCTTCCACCTCGACACGCACAAATCCAAGTTTGTCGACTTCCAGAAGgtgcgtaTCCAGGAGACGCAGGCGGAGCTTCCTCGCGGATCAATCCCACGCTCCCTGGAGGTGGTCCTGAGGGCCGAGGCTGTGGAGACGGCTCAGGCTGGAGACCGCTGTGACTTCACCGGGACCCTCATTGTCGTGCCGGACGTCTCTCAGCTCACCACTCCAGGTGTGCGAGCAGAGACCAGCACCCGCGTAGGTGGAGGACCCCAGGGCTTTGAGGCTGAGGGTTTGAAAGGACTGAAAGCGCTGGGCGTCAGAGAGCTTTCATACAGACTGGCCTTCCTGGCCTGCAATGTGGCCCCGACCAACCCACGAtttgGTGGTAAGGAGCTGCGGGATGAGGAGCAGACTGCAGAAAGCATAAAGAGCCAGATGACCGAGAAGGAGTGGGAGAAAGTGTTTGAGATGAGCCAGGACAAGAACTTGTACCACCACCTGTGCACCAGCCTCTTCCCCACCATCCACGGCAATGACGAGGTGAAGCGCGGCGTCCTGCTGATGCTGTTTGGAGGCGTTCCGAAGACGACCATGGAGCGAACCTCACTGAGAGGAGATATCAATGTCTGCATTGTAGGAGACCCCAGTACTGCCAAGAGCCAGTTCCTCAAGCACGTGGAGGAGTTCAGTCCCAGAGCAGTGTACACTAGCGGCAAGGCCAGCAGCGCTGCCGGTCTGACGGCGGCGGTGGTCCGAGACGAGGAGTCCCACGAGTTTGTCATCGAGGCCGGAGCTCTGATGCTGGCGGACAACGGTGTGTGCTGCATTGACGAGTTTGACAAGATGGACATCAAGGACCAGGTGGCCATCCATGAAGCCATGGAACAGCAGACCATCAGCATCACCAAGGCTGGAGTCAAGGCCACCCTGAATGCTCGCACCTCCATCCTGGCTGCCGCCAACCCTGTCGGTGGGCGCTACGACCGCAGCAAGAGTCTGAAGCAGAACGTCAACCTGTCCGCCCCCATCATGAGCCGCTTCGACCTCTTCTTCATCCTGGTGGACGAGTGTAATGAGGTGACAGACTACGCCATCGCCAGGCGCATCGTGGACCTGCACACCCGCATGGAGCAATCTGTGGACAGACTGTACTCTCTGGATGAAATCCGCAGATACCTGCTCTTTGCAAGGCAGTTCAAACCTAAGATCTCCAGCGAGTCTGAAGAGTTCATCGTTGAGCAGTACAAGCGTCTCCGCCAACGCGACGGCTCTGGAGGTGTGTCCAAGTCTGCCTGGAGAATAACTGTGCGACAGCTGGAGAGCATGATCCGCCTTTCAGAGGGCATGGCGCGCATGCACTGCTGTGACGAGgTGCAGCCCAAACATGTGAAGGAAGCCTTCCGTCTTCTGAACAAATCCATCATCAGAGTGGAGACGCCCGACATCAACCTGGAGCAGGACGACGagctggaggaagaggagcagcagcaggaggatgGAAATGCCGTCCCTAACGGAGTGAATGGTGTAAACGGCCACGTGGACGGTGTTAACGGGCACGCCAATGGCACTAACGGACATGTCAACGGTGTGAACGGCCACGCTGAGTCTGGAACCCAGTCCAAACCATCTCTCCGCCTGTCCTTCACGGAGTACAAACGCATCTCCAACCTGCTGGTGCTGCATTTGCGCCGGGCCGAGGAAGctgaggaagaggaagaactgAAGAAAAGTGCGGTGGTGAACTGGTATCTGAAGGAGATTGAGTCAGAGATCGACTCCGAGGAGGAGCTCGTCAATAAGAAGGGCCTGATAGAGAAGGTCCTTCACAGGCTCGTGCACTTTGATCACATCCTCATCGAGCTGTCTCAGGGGGGGCTGAAGGGCTCCGAATCTGccaccacagaagaagaagttcTGGTTGTCAACCCCAACTACATCCTGGAAGATTAAACTCCTCCCTTCATGCCTCTGTTTAGGTTTTTCTCCATTCCCCTTACAGCTTCCATGATTGTTGTTATTAAACCTCAACAATGAAGTTGATGTTCAAGGTGTTTTTAAATGCTCATATGTAACGCATACATAAAAGTAGCATTGGAGATGTTATTTGACATGTTTTGTACTGTACAGAAGATTCTGGGGCTCTCAAACAAAAAGCGTGTCTTAGTCAAACAGACTTTTGTAAATATGCTGCTCTTTGTCCTCCAGTTGTTTGCTGGCTTCGGTCTGTTTGGCTCTGTCAGGGGAACTACCCTGGTTTGTGTAATTGCTGATTATCCATAACTGTATATTCAAGACATACGCTGAGGCTTACTTTCCTCAATGGTTTCAAGTTCTATTGTGTGTCTTTTGTAAAATGATGACTTGGAGTAAATGgaaatgtttaataaataaaatgttgacaTACACACAA

Function

symbol description
mcm6 Predicted to enable single-stranded DNA binding activity. Predicted to contribute to single-stranded 3'-5' DNA helicase activity. Predicted to be involved in DNA-dependent DNA replication and double-strand break repair via break-induced replication. Predicted to act upstream of or within DNA duplex unwinding and DNA replication initiation. Predicted to be part of MCM complex. Predicted to be active in nucleus. Is expressed in central nervous system and proliferative region. Orthologous to human MCM6 (minichromosome maintenance complex component 6).

NR:

description
PREDICTED: DNA replication licensing factor MCM6

GO:

id name namespace
GO:0032508 DNA duplex unwinding biological_process
GO:0006270 DNA replication initiation biological_process
GO:0042555 MCM complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003678 DNA helicase activity molecular_function

KEGG:

id description
K02542 MCM6; DNA replication licensing factor MCM6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816866.1 True 3177 mRNA 0.54 18 13176825 13183207

Neighbor

gene id symbol gene type direction distance location
LOC120569132 LOC104948641,LOC103362219,LOC104938220,LOC103396234 coding upstream 9994 13163839 ~ 13166831 (+)
si:ch211-227n13.3 NA coding upstream 13307 13159016 ~ 13163518 (+)
pecr pecr coding upstream 54152 13118569 ~ 13122673 (+)
orc2 LOC102787487 coding upstream 64561 13106699 ~ 13112264 (+)
zgc:162816 LOC103362211,LOC102298354,LOC107097021 coding upstream 71024 13101402 ~ 13105801 (+)
LOC120568679 NA coding downstream 30109 13213316 ~ 13223854 (+)
trnae-cuc_17 NA coding downstream 34932 13218139 ~ 13218210 (+)
LOC120568782 pcdh8 coding downstream 90955 13274162 ~ 13278429 (+)
LOC120568688 lect1 coding downstream 95869 13279076 ~ 13286178 (+)
LOC120567765 NA coding downstream 206014 13389221 ~ 13392603 (+)
G114008 LOC104953400 non-coding upstream 23231 13152099 ~ 13153594 (+)
G114000 NA non-coding upstream 148655 13027079 ~ 13028170 (+)
G113956 NA non-coding upstream 302515 12861625 ~ 12874310 (+)
G113938 NA non-coding upstream 397427 12778340 ~ 12779398 (+)
G113852 NA non-coding upstream 549306 12626079 ~ 12627519 (+)
G114033 NA non-coding downstream 13054 13196261 ~ 13198734 (+)
G114035 NA non-coding downstream 16561 13199768 ~ 13200746 (+)
G114037 NA non-coding downstream 21618 13204825 ~ 13207023 (+)
LOC120568783 NA non-coding downstream 67544 13250751 ~ 13254585 (+)
G114055 NA non-coding downstream 103443 13286650 ~ 13287219 (+)
ndufb3 ndufb3 other upstream 51362 13123030 ~ 13125463 (+)
rpl37a rpl37a,RPL37A other upstream 59469 13114596 ~ 13117356 (+)
col6a1 col6a1 other upstream 102231 13010575 ~ 13074594 (+)
G113979 LOC104959684 other upstream 201188 12929215 ~ 12975637 (+)
si:ch73-71c20.5 NA other downstream 77 13183284 ~ 13186364 (+)
LOC120568245 LOC103365337,LOC101481118,LOC102206401,LOC102290843 other downstream 1103943 14287150 ~ 14295993 (+)
rgs18 rgs18,LOC106918816,LOC103139989,LOC103479038 other downstream 1802570 14985777 ~ 14993083 (+)
ro60 trove2 other downstream 1830536 15013743 ~ 15026208 (+)
G114789 NA other downstream 1968589 15151796 ~ 15157199 (+)

Expression


Co-expression Network