nr2f6a (LOC104920957,LOC101167397,LOC106911939)


Basic Information

Item Value
gene id nr2f6a
gene name LOC104920957,LOC101167397,LOC106911939
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 34243838 ~ 34253143 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816872.1
TGGTTCGGTAACCAAGCGATGGCCATGGTGAGTGGGGGCTGGGGAGATCCCAATGGGGGCACCAACGGGCTGGGGGACAAGAGCTACctgaggggggaggaggaagacgGCTCTCCCCAGGCGGGAGGCAGCGACATGGAGGCCGGAGACGACGACAAGTCGTGCGTGGTGGACTGCGTGGTGTGCGGGGACAAGTCCAGCGGGAAACATTACGGCGTGTTCACGTGCGAGGGCTGCAAGAGCTTCTTCAAGAGGAGCGTCAGACGCAACCTCAGCTACACTTGCAGGTCAAACAGAGAGTGCCAGATTGACCAGCACCACAGGAACCAGTGCCAGTACTGTCGGCTGAAGAAGTGTTTCCGTGTTGGCATGCGCAAAGAAGCAGTTCAACGCGGACGTATCCCCCCTCAGCCGAGCCTCAGCCCCTCTATAACACCCATAGGTGGCGCGAGCGGCCTCGGAGGCGGCGACTtctataacaacaacaacaacaacggggGAAGTGGCGGGGGTCAGCCGGTGTCCGAGCTGATTTCCCAGCTGCTGCGAGCCGAACCGTACCCCAGCAGTCGGTTTGGACACCAGTACAACCAGCAGGCGGGCCCCGATAACGCCATGGGGATCGATAACATCTGTGAACTGGCTGCCAGGCTACTCTTCAGCACCGTGGAGTGGGCCAGAAGCATCCCCTATTTCCCTGAGCTGCCGGTGTCAGACCAGGTGGCCCTGCTGAGGCTGAGCTGGAGCGAGTTGTTCATCCTCAACGCGGCGCAGTCGGCGCTGCCGCTCCACATGGCTCCCCTGTTGGCCGCGGCCGGCTTCCACTCCTCGCCCATGTCTGCGGAGCGCGTGGTGTCCTTCATGGACCAGGTGAGGGTGTTTCAGGACCAGGTGGACAAGCTGACCCGGCTGCAGGTGGACTCTGCTGAGTACAGCTGCCTCAAGGCCATCGCGCTGTTCTCACCAGaTGCCTGTGGTCTAACAGACCCAGTCCACGTGGAGTCTCTGCAGGAGAAGGCTCAGGTGGCTCTGACAGAGTACGAGAGGATGCAGTACCCGAGTCAGCCTCAGCGCTTCGGGCGCCTGCTCCTGCGCCTCCCCGCCCTGCGTGCCGTTCCCGCCAGCCTCATCTCGCAGCTCTTTTTCATGCGCCTGGTAGGAAAGACACCCATCGAGACGCTGATCCGTGACATGCAGCTCTCCGGAAGCTCCATCAGCTGGCCGTATGTCCCGGGACAGTAGCCCCCTTTAGGGACGAGGTCTCCGTCCGGGATTTGTGACGACAAGGACCCACAGGAAACCTCCTGACTCATCACTATCCATCTGTGTGGTTGTCAAACTGCAGTGCCAGCTGGCCGTcatatgtactgtactgtaagcgCTCTATTTCCCCCTCATGAAACGAGCTCTCTGTCTCCACACGGGCCTCCAGTGGAGAGACGAGCCAGCGCCAGGCTGGATCTGTCTTGTTGCCAACCCAGTCGTTCTGGTGCCAGGTCTCAGGCCAGAGACCAGCTTTTCATGCTGGGATCCGATATGGCCACCACAGCCAGTCATGTCACCACCCACATGCCATAGTGACTAAAGACGCTGCAGTTTCATGTAGAGGGCAGCAGCACCCTGCTACAAATACATCCAGAGGACAAAACTGTCCCACGGCTGAAAGTCGGCAGAACAATTTCCCCCCCACACTGGGCTCATTTTCCACAGCTCACCATTTGTGATACGGTGACCTTTTTATCCACACAGCTGATAACATTACAATACGGTATCGTGATGAGAAAGGACCGAATGGAACAGCAGTGAACTCAATATAAGAGAAAGCAAAGGCCTCGTTGTTGAAGAGAAACTTTTGAATTCACCGCGCTCTCAGCTCGACGCTGAGGACGAGGCCAACGAGCTGATCAaatggaaaagagagaaaataaaggaaaaaatcACCAAAGTCTAACGCATCATCCTCCGAGATGGTTTCTAAATAGAATAATTAGTACACAAagcagagtgaaagagatgaACGGACTCTTGTGACTGCCTGACCATCAAAGTGAACAAtgcatttacattcattcaCTACACTGTTGCTGTAGTTGAAGATTTTtcaccgaaaaaaaaaaagccacagttaCAGTACACGAGTGGACTAATACCTCGCGAGACATCAGAATGCTTCAGTCTGATATTTCCAAAACACAAACCTCTGTAAATGTTGTTCACCAGAAACCGCCTTCTTTTTTGACAACTGCCTTGTTATTCATTATAAATTTGGGACacatatgaaatatgaaatggGCACCGCAAACATTCGTCTTGTATCTTTTTAAAAAGGATCCCCAAAGTGATTTTCACTTGTGTTTCGGATATGAGTTTTGACTGACTGAATAAGGAGAATTCAGCTATTAAACAACGTTTGGATCgagctttttattattattattattaagaaacAGCAGGCTGACATTAACTCGGGTTCTCGTTAAACAACTCAAGATTCAAGAATTAGTTATAGTTGGTGGTGAGAGAATTTATAACCAACACTACTAATTAAATACCAGTTTACGTCGATCAATTCTGTTTCTGGGGTTAATGATCCCTTTAAAGAAAAAACTGTATTGAAATGTATATATTGAGGCCAACTACGTCTTTTTGCAtgttcaaatgttgttttttggaTCTCTGCTAAGTGGAGACTGTTTAATTCTTTTACGTTATGTAATTCAAGGttcatttaaacattaaagtatTGCTTTCACTGTTAGCTTCTAGATGTTTTTTTCTATATGTATTTACATGAAAATACCTCTGTCATCTGTTTAGATGTCAAAACAGCAAGCTTATCTTCATGCCATTACAGCTGATATGACACAGAGATGCTCTTGAGTCAGTCTCTACTGTTGTGAATGATGTGAGACGATACTGTAAAGGATGGAAatctggtgggggggggggggaactgcACTTGGAGGACGTTCGATGCCAAAACATCTCGCTATCTGTTAAAAAGCAGACGGGCCCTGATTCTCTGGTCCACCAGGATTTACCTCACACTGGTATGTCAAAAGGGCGAGTTTACAAAATCACAAGTACAATATTTGAAAGAAAAGAACAAGGTCAACCCTAAATGCTGAAGTCTGTTGTATTTACTTTTCAAACGCAAAGTAGAAGGATGTAACTCTGCTTCTTGATCTACCGCAGGGCCTTGTTGAAAGTTGTTTGGATATTCTTCTTTTAGGCAACGGCTCAAACGACCGCATCAtcgagagaaaaaaacaaaaaaaacataaatatgatattaatgttTTCTTATCTTTGTGTTACTGAGTTCTTACGTTTTTAAAATGTCACGTGTATGGCAACATTATTAAAAGAATCAAAAGTTGACGGTGTGTCTTTTgttatgttttgtgttttttcaaaCTACTTGGAAAAAGTGTTGTAATTACATCTGTATGAAGAATGCCAAATAAACACTGCAACATGTAC
>XM_039816873.1
TGGTTCGGTAACCAAGCGATGGCCATGGTGAGTGGGGGCTGGGGAGATCCCAATGGGGGCACCAACGGGCTGGGGGACAAGAGCTACctgaggggggaggaggaagacgGCTCTCCCCAGGCGGGAGGCAGCGACATGGAGGCCGGAGACGACGACAAGTCGTGCGTGGTGGACTGCGTGGTGTGCGGGGACAAGTCCAGCGGGAAACATTACGGCGTGTTCACGTGCGAGGGCTGCAAGAGCTTCTTCAAGAGGAGCGTCAGACGCAACCTCAGCTACACTTGCAGGTCAAACAGAGAGTGCCAGATTGACCAGCACCACAGGAACCAGTGCCAGTACTGTCGGCTGAAGAAGTGTTTCCGTGTTGGCATGCGCAAAGAAGTTCAACGCGGACGTATCCCCCCTCAGCCGAGCCTCAGCCCCTCTATAACACCCATAGGTGGCGCGAGCGGCCTCGGAGGCGGCGACTtctataacaacaacaacaacaacggggGAAGTGGCGGGGGTCAGCCGGTGTCCGAGCTGATTTCCCAGCTGCTGCGAGCCGAACCGTACCCCAGCAGTCGGTTTGGACACCAGTACAACCAGCAGGCGGGCCCCGATAACGCCATGGGGATCGATAACATCTGTGAACTGGCTGCCAGGCTACTCTTCAGCACCGTGGAGTGGGCCAGAAGCATCCCCTATTTCCCTGAGCTGCCGGTGTCAGACCAGGTGGCCCTGCTGAGGCTGAGCTGGAGCGAGTTGTTCATCCTCAACGCGGCGCAGTCGGCGCTGCCGCTCCACATGGCTCCCCTGTTGGCCGCGGCCGGCTTCCACTCCTCGCCCATGTCTGCGGAGCGCGTGGTGTCCTTCATGGACCAGGTGAGGGTGTTTCAGGACCAGGTGGACAAGCTGACCCGGCTGCAGGTGGACTCTGCTGAGTACAGCTGCCTCAAGGCCATCGCGCTGTTCTCACCAGaTGCCTGTGGTCTAACAGACCCAGTCCACGTGGAGTCTCTGCAGGAGAAGGCTCAGGTGGCTCTGACAGAGTACGAGAGGATGCAGTACCCGAGTCAGCCTCAGCGCTTCGGGCGCCTGCTCCTGCGCCTCCCCGCCCTGCGTGCCGTTCCCGCCAGCCTCATCTCGCAGCTCTTTTTCATGCGCCTGGTAGGAAAGACACCCATCGAGACGCTGATCCGTGACATGCAGCTCTCCGGAAGCTCCATCAGCTGGCCGTATGTCCCGGGACAGTAGCCCCCTTTAGGGACGAGGTCTCCGTCCGGGATTTGTGACGACAAGGACCCACAGGAAACCTCCTGACTCATCACTATCCATCTGTGTGGTTGTCAAACTGCAGTGCCAGCTGGCCGTcatatgtactgtactgtaagcgCTCTATTTCCCCCTCATGAAACGAGCTCTCTGTCTCCACACGGGCCTCCAGTGGAGAGACGAGCCAGCGCCAGGCTGGATCTGTCTTGTTGCCAACCCAGTCGTTCTGGTGCCAGGTCTCAGGCCAGAGACCAGCTTTTCATGCTGGGATCCGATATGGCCACCACAGCCAGTCATGTCACCACCCACATGCCATAGTGACTAAAGACGCTGCAGTTTCATGTAGAGGGCAGCAGCACCCTGCTACAAATACATCCAGAGGACAAAACTGTCCCACGGCTGAAAGTCGGCAGAACAATTTCCCCCCCACACTGGGCTCATTTTCCACAGCTCACCATTTGTGATACGGTGACCTTTTTATCCACACAGCTGATAACATTACAATACGGTATCGTGATGAGAAAGGACCGAATGGAACAGCAGTGAACTCAATATAAGAGAAAGCAAAGGCCTCGTTGTTGAAGAGAAACTTTTGAATTCACCGCGCTCTCAGCTCGACGCTGAGGACGAGGCCAACGAGCTGATCAaatggaaaagagagaaaataaaggaaaaaatcACCAAAGTCTAACGCATCATCCTCCGAGATGGTTTCTAAATAGAATAATTAGTACACAAagcagagtgaaagagatgaACGGACTCTTGTGACTGCCTGACCATCAAAGTGAACAAtgcatttacattcattcaCTACACTGTTGCTGTAGTTGAAGATTTTtcaccgaaaaaaaaaaagccacagttaCAGTACACGAGTGGACTAATACCTCGCGAGACATCAGAATGCTTCAGTCTGATATTTCCAAAACACAAACCTCTGTAAATGTTGTTCACCAGAAACCGCCTTCTTTTTTGACAACTGCCTTGTTATTCATTATAAATTTGGGACacatatgaaatatgaaatggGCACCGCAAACATTCGTCTTGTATCTTTTTAAAAAGGATCCCCAAAGTGATTTTCACTTGTGTTTCGGATATGAGTTTTGACTGACTGAATAAGGAGAATTCAGCTATTAAACAACGTTTGGATCgagctttttattattattattattaagaaacAGCAGGCTGACATTAACTCGGGTTCTCGTTAAACAACTCAAGATTCAAGAATTAGTTATAGTTGGTGGTGAGAGAATTTATAACCAACACTACTAATTAAATACCAGTTTACGTCGATCAATTCTGTTTCTGGGGTTAATGATCCCTTTAAAGAAAAAACTGTATTGAAATGTATATATTGAGGCCAACTACGTCTTTTTGCAtgttcaaatgttgttttttggaTCTCTGCTAAGTGGAGACTGTTTAATTCTTTTACGTTATGTAATTCAAGGttcatttaaacattaaagtatTGCTTTCACTGTTAGCTTCTAGATGTTTTTTTCTATATGTATTTACATGAAAATACCTCTGTCATCTGTTTAGATGTCAAAACAGCAAGCTTATCTTCATGCCATTACAGCTGATATGACACAGAGATGCTCTTGAGTCAGTCTCTACTGTTGTGAATGATGTGAGACGATACTGTAAAGGATGGAAatctggtgggggggggggggaactgcACTTGGAGGACGTTCGATGCCAAAACATCTCGCTATCTGTTAAAAAGCAGACGGGCCCTGATTCTCTGGTCCACCAGGATTTACCTCACACTGGTATGTCAAAAGGGCGAGTTTACAAAATCACAAGTACAATATTTGAAAGAAAAGAACAAGGTCAACCCTAAATGCTGAAGTCTGTTGTATTTACTTTTCAAACGCAAAGTAGAAGGATGTAACTCTGCTTCTTGATCTACCGCAGGGCCTTGTTGAAAGTTGTTTGGATATTCTTCTTTTAGGCAACGGCTCAAACGACCGCATCAtcgagagaaaaaaacaaaaaaaacataaatatgatattaatgttTTCTTATCTTTGTGTTACTGAGTTCTTACGTTTTTAAAATGTCACGTGTATGGCAACATTATTAAAAGAATCAAAAGTTGACGGTGTGTCTTTTgttatgttttgtgttttttcaaaCTACTTGGAAAAAGTGTTGTAATTACATCTGTATGAAGAATGCCAAATAAACACTGCAACATGTAC

Function

NR:

description
PREDICTED: nuclear receptor subfamily 2 group F member 6 isoform X1

GO: NA

KEGG:

id description
K08549 NR2F6, EAR2; nuclear receptor subfamily 2 group F member 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816872.1 True 3483 mRNA 0.48 5 34243838 34253143
XM_039816873.1 False 3480 mRNA 0.48 5 34243838 34253143

Neighbor

gene id symbol gene type direction distance location
ptger4c LOC104920997,LOC103353922,LOC100696844 coding upstream 236587 34004895 ~ 34007251 (+)
dmbx1a dmbx1,LOC102206215,LOC102778954,LOC100697381,LOC103354234 coding upstream 305060 33929067 ~ 33938778 (+)
wls wls coding upstream 434162 33768879 ~ 33809676 (+)
scinlb LOC106958286,LOC106904251,LOC103149535 coding upstream 476059 33743259 ~ 33767779 (+)
ccdc18 NA coding upstream 514198 33701632 ~ 33729640 (+)
angptl4 LOC103369125 coding downstream 172156 34425299 ~ 34432504 (+)
mast3a LOC104920969,LOC103357775 coding downstream 277412 34530555 ~ 34565654 (+)
ifi30 NA coding downstream 365409 34618552 ~ 34622369 (+)
LOC120568198 LOC104920972,LOC103369709,LOC102237980,LOC108244847,LOC102193504 coding downstream 439484 34692627 ~ 34707973 (+)
pgpep1 pgpep1,LOC103361119 coding downstream 461833 34714976 ~ 34719870 (+)
G120125 LOC104920953,LOC104954835,LOC103395859 non-coding upstream 85858 34153919 ~ 34157980 (+)
G120120 NA non-coding upstream 97392 34144426 ~ 34146446 (+)
G120064 NA non-coding upstream 132491 34042552 ~ 34111347 (+)
G120069 NA non-coding upstream 230955 34012678 ~ 34012883 (+)
G120062 NA non-coding upstream 255931 33987432 ~ 33987907 (+)
G120199 LOC107100640,LOC106535681 non-coding downstream 59646 34312789 ~ 34313388 (+)
LOC120568876 NA non-coding downstream 96137 34349280 ~ 34377895 (+)
G120237 NA non-coding downstream 180696 34433839 ~ 34435395 (+)
LOC120567793 LOC100694462,LOC104944857 non-coding downstream 219706 34472849 ~ 34492377 (+)
G120291 NA non-coding downstream 315042 34568185 ~ 34568765 (+)
LOC120568953 dda1,LOC105024194,LOC106568965,LOC104920954 other upstream 71529 34166976 ~ 34172309 (+)
mrpl34 NA other upstream 77986 34164080 ~ 34165852 (+)
LOC120568585 LOC108244495 other upstream 286334 33955166 ~ 33957504 (+)
G119957 gadd45a,LOC106598934,LOC106568974 other upstream 383991 33858542 ~ 33859847 (+)
gng12a gng12,LOC104920945,LOC104956611,LOC103354642 other upstream 391901 33810968 ~ 33851937 (+)
G120200 NA other downstream 64005 34317148 ~ 34317766 (+)
rps28 NA other downstream 147605 34400748 ~ 34404001 (+)
G120249 rps15,rig,rs15 other downstream 200579 34453722 ~ 34457611 (+)
pik3r2 pik3r2,LOC102792547,LOC100693657 other downstream 316251 34569394 ~ 34607756 (+)
pde4ca pde4c,LOC101063915,LOC100693394,LOC102791393,LOC102313416 other downstream 371133 34624276 ~ 34691620 (+)

Expression


Co-expression Network