ca8 (ca8)


Basic Information

Item Value
gene id ca8
gene name ca8
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 9235285 ~ 9256693 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816877.1
gcaaCAACAGAGTaaagagaaatacagagaggcAGAAAGCTCCACACACATCAGTTATTAGCTGTAAGAAGACAAGAGCGAGAGAGGACATACTGTAACAGgataaaaagacagaaaaaaatagaaagagaggggaaaagaaaagaaaagaaaagaagaaactaAAGACCAAGACATAAAGAAGAAAGTGAAAAGCTGAGGAAGTTGTTGCTCAGCTGGGAATCCATTCAGCACACTGTAGAGACTTGTCCAAGTGAACAGACAAAACCAGTGTGACTGGGAGTCTACTGGGAGGTCGGACTGGTTTCTACCCACAGCGAGCACACTGCCAAGCACCATGGCCGACAACGTGAACGAGGAGTCGGATTATAACCCGGGAAAAGATGAGCTGGACTGGGGCTACGAGGAAGGTGTAGAATGGGGACTCCTTTTCCCAGCAGCCAACGGCGAGTACCAGTCTCCCATTAACTTAAACTCCAGGGAGGCTCAGTATGACCCGTCCCTCCTGGATGTCGGCTTATCACCAAACTACGTGGTGTGTCGAGACTGTGAGGTCATCAACGACGGACACACCGTCCGCATCATTCTCAAGTCCAAGTCAGTGGTTACCGGGGGTCCGTTGCCCAGTGATCATGAgtatgagcttcatgaggttcGATTCCACTGGGGCAAAGAGAACCAGAGAGGATCAGAGCACACTGTCAACTTCAAGGCTTTCCCTATGGAGcTCCATCTGATTCACTGGAACAGCACTCTGTTTAACACTTTGGAGGACGCTCTTGGGATGAAGAATGGAGTCCTCATCATAGCTCTTTTTGTGCAGATTGGTAAGGAGCATCTGGGTCTGAAGGCCATCACTGAAGTTCTACAGGACCTGCAGTACAAGGGGAAGAGCAAGATAATCCCCTGCTTCAACCCCAACACTCTGTTACCTGatcctttactgagAGACTACTGGGTGTATGAAGGATCTCTGACCACCCCGCCTTGTAGTGAAAGTGTGACCTGGATTCTCTACCGCTACCCTCTCACCATCTCACAGTCACAgATTGAGGAGTTTCGGAGGCTGCGGTCCCATGTCAAAGGGGCGGAGCTACAGGAAGGGAATGATGGGATGTTGGGCGACAACTTCCGTCCCACCCAGCCGCTCAGTGACCGGACGGTTCGTGCCGCCTTTCAGTGACTCTCGCTTTCCACTGCAAACTCAGAAAAACTATGGGACCTACAGATACAAGTGCAGAAGGAGAGAAGGAAGAAGAGGTGTGAAGCGAGGAAtggaaaaagagggagagagaaaaagtgaaTGTGGTGGTAGATCAGCTGCAGACTGAAGGTGGACAAACTATTGATCTCACACCTTCAATGTATGCttttgttcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgtgtgtgtaggtgtgtccTCTTCCGCTtaacctctctctccccctctcattcttactgaatatgtatctgtgtgtgtaacatccTCCCTATGCCTGTGTGTCTCTAGTAtgtttgtacatgtgtgtgtcctgaTTAGATAAAAGGAGGCTTTACAACCAGTCTCTGCTTCTGTCAAAACAAGAGGAAGCGTAAACCTCAGAtgtacctgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatacacacacacacacacacgcacacacacgcacacatgcacacacacacgcaaacacacacaagttcactaCACcgtatttgtattatttgtaacttttgttttgaatctgaaaatggAGTCAACACTACAGACAAATCTGAGTTGTAGGAGGAAGTAGACAAACTGCCAATAATGTGCTGGCACCTGACTGGTAAACCACTCATCTAATCATGTAATATAACaccttttttgtactttttaagcCCTTTTCCCAAGCTATCTGTCCAAGTGATCTGCAAGAACCTGTTATGTGTTGAAAATGTAGTAGCAAATGCCGTTAAAGGTACTGTGTCTGACAAACTGAGCTGAAATATACTGTGAGAACTGATGACTGTTACTGTAAAGCAACAATAAACTACAACACTGACTGAAACACCGAA
>XM_039816878.1
agcaaCAACAGAGTaaagagaaatacagagaggcAGAAAGCTCCACACACATCAGTTATTAGCTGTAAGAAGACAAGAGCGAGAGAGGACATACTGTAACAGgataaaaagacagaaaaaaatagaaagagaggggaaaagaaaagaaaagaaaagaagaaactaAAGACCAAGACATAAAGAAGAAAGTGAAAAGCTGAGGAAGTTGTTGCTCAGCTGGGAATCCATTCAGCACACTGTAGAGACTTGTCCAAGTGAACAGACAAAACCAGTGTGACTGGGAGTCTACTGGGAGGTCGGACTGGTTTCTACCCACAGCGAGCACACTGCCAAGCACCATGGCCGACAACGTGAACGAGGAGTCGGATTATAACCCGGGAAAAGATGAGCTGGACTGGGGCTACGAGGAAGAATGGGGACTCCTTTTCCCAGCAGCCAACGGCGAGTACCAGTCTCCCATTAACTTAAACTCCAGGGAGGCTCAGTATGACCCGTCCCTCCTGGATGTCGGCTTATCACCAAACTACGTGGTGTGTCGAGACTGTGAGGTCATCAACGACGGACACACCGTCCGCATCATTCTCAAGTCCAAGTCAGTGGTTACCGGGGGTCCGTTGCCCAGTGATCATGAgtatgagcttcatgaggttcGATTCCACTGGGGCAAAGAGAACCAGAGAGGATCAGAGCACACTGTCAACTTCAAGGCTTTCCCTATGGAGcTCCATCTGATTCACTGGAACAGCACTCTGTTTAACACTTTGGAGGACGCTCTTGGGATGAAGAATGGAGTCCTCATCATAGCTCTTTTTGTGCAGATTGGTAAGGAGCATCTGGGTCTGAAGGCCATCACTGAAGTTCTACAGGACCTGCAGTACAAGGGGAAGAGCAAGATAATCCCCTGCTTCAACCCCAACACTCTGTTACCTGatcctttactgagAGACTACTGGGTGTATGAAGGATCTCTGACCACCCCGCCTTGTAGTGAAAGTGTGACCTGGATTCTCTACCGCTACCCTCTCACCATCTCACAGTCACAgATTGAGGAGTTTCGGAGGCTGCGGTCCCATGTCAAAGGGGCGGAGCTACAGGAAGGGAATGATGGGATGTTGGGCGACAACTTCCGTCCCACCCAGCCGCTCAGTGACCGGACGGTTCGTGCCGCCTTTCAGTGACTCTCGCTTTCCACTGCAAACTCAGAAAAACTATGGGACCTACAGATACAAGTGCAGAAGGAGAGAAGGAAGAAGAGGTGTGAAGCGAGGAAtggaaaaagagggagagagaaaaagtgaaTGTGGTGGTAGATCAGCTGCAGACTGAAGGTGGACAAACTATTGATCTCACACCTTCAATGTATGCttttgttcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgtgtgtgtaggtgtgtccTCTTCCGCTtaacctctctctccccctctcattcttactgaatatgtatctgtgtgtgtaacatccTCCCTATGCCTGTGTGTCTCTAGTAtgtttgtacatgtgtgtgtcctgaTTAGATAAAAGGAGGCTTTACAACCAGTCTCTGCTTCTGTCAAAACAAGAGGAAGCGTAAACCTCAGAtgtacctgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatacacacacacacacacacgcacacacacgcacacatgcacacacacacgcaaacacacacaagttcactaCACcgtatttgtattatttgtaacttttgttttgaatctgaaaatggAGTCAACACTACAGACAAATCTGAGTTGTAGGAGGAAGTAGACAAACTGCCAATAATGTGCTGGCACCTGACTGGTAAACCACTCATCTAATCATGTAATATAACaccttttttgtactttttaagcCCTTTTCCCAAGCTATCTGTCCAAGTGATCTGCAAGAACCTGTTATGTGTTGAAAATGTAGTAGCAAATGCCGTTAAAGGTACTGTGTCTGACAAACTGAGCTGAAATATACTGTGAGAACTGATGACTGTTACTGTAAAGCAACAATAAACTACAACACTGACTGAAACACCGAA

Function

symbol description
ca8 Predicted to enable hydro-lyase activity. Acts upstream of or within cerebellum development; chordate embryonic development; and swimming behavior. Is expressed in several structures, including brain; digestive system; hatching gland; hindbrain neural plate; and pleuroperitoneal region. Used to study cerebellar ataxia, mental retardation and dysequlibrium syndrome. Human ortholog(s) of this gene implicated in cerebellar ataxia, mental retardation and dysequlibrium syndrome. Orthologous to human CA8 (carbonic anhydrase 8).

NR:

description
PREDICTED: carbonic anhydrase-related protein

GO:

id name namespace
GO:0021549 cerebellum development biological_process
GO:0006730 one-carbon metabolic process biological_process
GO:0036269 swimming behavior biological_process
GO:0009790 embryo development biological_process
GO:0008270 zinc ion binding molecular_function
GO:0004089 carbonate dehydratase activity molecular_function

KEGG:

id description
K01672 CA; carbonic anhydrase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816877.1 True 2109 mRNA 0.47 9 9235286 9256693
XM_039816878.1 False 2104 mRNA 0.47 9 9235285 9256693

Neighbor

gene id symbol gene type direction distance location
LOC120568720 ptbp2,LOC103370128,LOC106917804,LOC102234855,LOC102779238,LOC105008310,LOC107570490,LOC105910816 coding upstream 142009 9071636 ~ 9093276 (+)
LOC120568868 NA coding upstream 165032 9065585 ~ 9070253 (+)
dpydb dpyd coding upstream 170764 9048166 ~ 9064521 (+)
odr4 LOC103370130,LOC102290351,LOC102783281 coding upstream 198591 9028557 ~ 9036694 (+)
prg4a LOC104954333 coding upstream 239129 8989441 ~ 8996156 (+)
tox tox,LOC106524915,LOC101481153 coding downstream 30460 9287153 ~ 9339618 (+)
LOC120568395 NA coding downstream 102927 9359620 ~ 9426547 (+)
dars2 dars2 coding downstream 254489 9511182 ~ 9521842 (+)
bpnt2 impad1 coding downstream 266477 9523170 ~ 9534035 (+)
trnaq-cug_7 NA coding downstream 281387 9538080 ~ 9538151 (+)
G113240 NA non-coding upstream 72740 9153001 ~ 9162545 (+)
LOC120569003 NA non-coding upstream 188853 9037893 ~ 9046432 (+)
G113148 NA non-coding upstream 225487 9009031 ~ 9009798 (+)
LOC120568741 NA non-coding upstream 265437 8967289 ~ 8969848 (+)
G113131 NA non-coding upstream 278013 8955878 ~ 8957272 (+)
G113273 NA non-coding downstream 630 9257323 ~ 9257583 (+)
G113274 NA non-coding downstream 12654 9269347 ~ 9269547 (+)
G113290 NA non-coding downstream 117756 9374449 ~ 9375105 (+)
LOC120568401 NA non-coding downstream 210605 9467298 ~ 9469320 (+)
G113306 NA non-coding downstream 212799 9469492 ~ 9470097 (+)
G113130 NA other upstream 232717 8944477 ~ 9002568 (+)
pdca LOC103370803,LOC104933924,LOC101478313,LOC102200750,LOC100699795,LOC102301525 other upstream 332438 8895927 ~ 8902847 (+)
LOC120568881 mfsd12,LOC104931866 other upstream 409474 8812897 ~ 8825811 (+)
LOC120568415 LOC103370799,LOC104931865,LOC101476899,LOC102794599,LOC102300092 other upstream 425826 8789209 ~ 8809459 (+)
atg10 atg10 other upstream 520014 8708661 ~ 8715271 (+)
LOC120568835 NA other downstream 1628902 10885595 ~ 10886478 (+)
pkia pkia,LOC102780447,LOC102205080 other downstream 2075875 11332568 ~ 11346225 (+)
abhd4 abhd4 other downstream 2865976 12122669 ~ 12128022 (+)
LOC120568189 nop9 other downstream 2900756 12157449 ~ 12166277 (+)
ap1g2 LOC106903824,LOC103138413,LOC106934762,LOC101486457,LOC103478890,LOC100694377 other downstream 3325949 12582642 ~ 12599840 (+)

Expression


Co-expression Network