LOC120569073


Basic Information

Item Value
gene id LOC120569073
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 693088 ~ 731224 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816918.1
gggatgcTAACCGAGAGAGAGCTGTTGTCGGAGCAGCTGCTGAGTTCTTCTTTAACCGATAATCAGGAAGATTTCTGATCTGataaataatcaataatcaGGGAACCTGCAGATGACCAGAGGACTCAGATCAGGTCAGCAGCTCGACAAGATGAGGTCTGGTCTGTGGTTTCTGAGCGTGCTCAGTGCATTTGTGTCCCTGTGGGAGGAGTCTGGCTGCGAGGCGATGACTCTGAACTCCGTCCTCCTCCATCCGGCGCCCGGAGGACGAGGAGCAGCCGAAGAAGGAGtccagcagaggaggaggaggaggagctgggTGTGGAACCAGTTCTTCGTCCTGGAGGAGTACACTGGAGACGAGCCGCTGTACATTGGGAAGCTCCACTCTGACCTAGATAAAGGAGACGGCGAGGTGCGGTACATCCTGACCGGTGAAGGAGCGTCGTCCATCTTCACCATCGATGAGACCACGGGAGACATCCACGCCACCAGGAGGTTGGACCGGGAGCTGCAGGCGTTCTATTCGCTGAGAGCTCAGGCTCGAGATAAAACAACCAATCAGCCGCTGGAACCAGAGTCCCGGTTCATCATTAAAGTCCAGGACATCAACGACAACCAGCCCAAGTTCCTGGACGGACCGCACACAGCCTGGATCCCCGAGAGGTCGCCAGTCGGAACATCGGTGGTGACGGTGGTGGCAACAGACGCTGATGATCCAACGTATGGAAACTCTGCCAGACTGGTTTACAGCATCCTGCAGGGGCCGCCATACTTCTCCGTGGAGCCAAAGACAGGCGTGGTGCGGACGGCGCTGGCGGACCTGGACCGGGAGGTGCGGGACCATTTCCTGTTGGTCATCCAGGCCAAAGACATGATTGGTCAGATGGGCGGTCTGACAGGAACAACGTCTGTTACCGTGATGCTGACGGACGTCAACGACAACCCACCGCGCTTCCCCCGCAggAGCTACCAGTTCCGGATCCCAGAGTCGGCTCTGGTTTTGGCCGTGGTCGCTAAGATCAAAGCTCTGGATCCAGACCTGGGTCCGAACGCTGAGATGGACTacaggatcctggagggggacGGACTGGGAACCTTCCAGATCATCACAGATCCAAACACACAGGAAggacaggaaggacTGCTCACTCTGCAGAAGACTTTGGATTTTGAGACGCGGCCGATCTTCTCGCTGCGCGTTGAGGCGTCCAACTGCTACGTGGACGCCCGTTTCCTGGCGCCCGGCGCCTTCAGCGACGTGGTGGCGGTCCGGCTGCTGGTGGAGAACGTCGACGAGCCACCGCTGTTCTCCTCCACGGGCGCCACGATGCAGATCTCAGAGGCAGCGCCAATCGGCACCGACCTGGGATCAGTTTCAGCTCGCGACCCAGACGCCAGAAACAGCCCCGTCAGGTATTCTATCGACAGGAAGTCGGACATGGAGCGTTACTTTGCCATTGACAGTATTTCAGGAGTCATCACAACCGCCAGAGCTCTGGACCGAGAGACCGTCGCTGTGCACAACATCACCGTCCTCGCTACAGAGACCCtgaaTGTGTCTCAGGTGGGGAAAGCTGTGGTTCTGGTCTCCGTGACGGATGTTAACGACAACGCTCCGAGCTTTGCCATCGAGTATCAAACGTTTGTCTGCGAGGACGCTGAACCTGGACAGATCATTGAGACTCTGAGCGCTGTGGACCGAGACCAACTGGAGAAcggacatcacttcctgttctCTCTCAGCGCCGAGCATGCTGGGAACTTCACCCTGAGAGACAACAAAGACAACACGGCGTCCGTCCTGACTGCGCCGGGTTTTCTGCGGCGAGACCAGCCGGTCCACGTCCTGCCTGTGGTGATCTCGGACGGCGGGCGCCCCCCCCTCAGCAGCACCAACATGCTGTCCGTCACCGTCTGCGTCTGCCAGGTCCACGGAGACCAGCGCGCCTGCAGCCGGCCGCCGGCAACACCGCTGGTCGCTGGCCTCAGCACCGCCACGGCCTTACTCACCTGCATCATCACACTGCTGggtgttgtcatggtaacagtAGCTGTCAGGCACCAGAGGCGAGAGCCCCCGATGACGGACGAGGAGCGAGACATCCTGGAGAACATCGTTCGTTACGATGATGAGGGCGGAGGAGAGGAAGACACCGAGGCCTTCGACATGTTCGCTCTGAGACAAACAGAACCGACCCGCAGGGTCCACCACCCGCCACCGGGACCCCTCAGAGACCATGACGTCCTCCGGCCGCCACCGGGACCCCTCAGAGACCACGACGTCCTCCGGCCGCCACCGGGACCCCTCAGAGACCATAACGTCCTCCCGCTGCCACAGGGACACCTCAGAGATCACGACGTCTTCCAGCCGCCACCGGGACCCCTCAGAGACAATGACGTCCACCCGCTGCCACCGGGACCCCTCAGAGACCACGACGTCCACCCGCTGCCACCGGGACCTCTCAGAGACCACGATGTCCTCCCGCTGCCACCGGGACCTCTCAGAGACCACAATGTCCTCCCGCTGCAACCGGGACCTCTCAGAAACCACGATGTCCTCCCGCTGCCACCGGGACCTCTCAGAGACCACGATGTCCTCCCGCTGCCACTGGGATCCCTCAAAGACCACGATGTCCTCCCGCTGCCACCGGGACCTCTCAGAGACCACGATGTCCTCCCGCTGCCACCGGGACCTCTCAGAGACCACGATGTCCTCCCGCTGCCACTGGGATCCCTCAAAGACCACGATGTCCTCCCGCTGCCACCGGGACCTCTCAGAGACCACGACGTTCTCCAGCTGCCACTGGGACCCCTCAGAGACCATGATGTCCTCCTGCTGCCACCAGGACCCCTTAGAGACCACGATGTCTACCCCCCAGAGTCCCAGGTGGATAAGCAGCATCTGTTCCAGGATTTCATCGGGGTCAGACTGCAGGAGGCGGACCGGGACTTGGCAGCGCCGCCCTACGACTCGCTGCAGACCTACGCCTTCGAGGGCAGTGGCTCGGCTGCCGAGTCTCTCAGCTCCCTGAACTCTTTAAACTCGTTGGACTCGTTGGAGTCCGAGCAGGACTACGAGTTCCTGAGAGAGTGGGGGCCGAGGTTCAGGAAGCTGGCTGACCTTTATGGACATGACGAGGGGGGCGGAGTCTGCTGGTAG

Function

GO:

id name namespace
GO:0060034 notochord cell differentiation biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816918.1 True 3163 mRNA 0.60 13 693088 731224

Neighbor

gene id symbol gene type direction distance location
LOC120567728 NA coding upstream 44616 646773 ~ 648472 (+)
LOC120568476 NA coding upstream 328904 363753 ~ 364184 (+)
LOC120567754 NA coding upstream 336049 356058 ~ 357039 (+)
LOC120569058 NA coding upstream 361758 330351 ~ 331330 (+)
LOC120567748 NA coding upstream 379094 313008 ~ 313994 (+)
c11h7orf25 LOC104932663 coding downstream 25897 757121 ~ 764131 (+)
LOC120567931 NA coding downstream 185904 917128 ~ 935180 (+)
LOC120567936 NA coding downstream 262135 993359 ~ 998215 (+)
LOC120567938 NA coding downstream 292403 1023627 ~ 1026824 (+)
LOC120567933 LOC106676760 coding downstream 304146 1035370 ~ 1039308 (+)
G110806 NA non-coding upstream 4308 688490 ~ 688780 (+)
G110794 NA non-coding upstream 51472 641286 ~ 641616 (+)
G110788 NA non-coding upstream 86699 605618 ~ 606389 (+)
G110783 NA non-coding upstream 89522 593894 ~ 603566 (+)
LOC120568718 NA non-coding upstream 108925 578738 ~ 584163 (+)
G110822 NA non-coding downstream 16497 747721 ~ 748675 (+)
G110823 NA non-coding downstream 35012 766236 ~ 766773 (+)
G110826 NA non-coding downstream 47103 778327 ~ 779219 (+)
G110829 NA non-coding downstream 75522 806746 ~ 808382 (+)
G110833 NA non-coding downstream 84722 815946 ~ 822488 (+)
G110789 NA other upstream 77092 612113 ~ 615996 (+)
G110768 NA other upstream 167937 523450 ~ 525151 (+)
G110704 NA other upstream 431161 182864 ~ 261927 (+)
LOC120568467 afg3l2,LOC107688430 other upstream 517716 146242 ~ 175372 (+)
G110678 NA other upstream 619864 72687 ~ 73224 (+)
dnajc1 dnajc1,LOC106533614 other downstream 6581 737805 ~ 756498 (+)
si:dkey-154p10.3 NA other downstream 251291 982515 ~ 1002554 (+)
cdyl cdyl other downstream 289639 1020863 ~ 1092763 (+)
G111076 NA other downstream 511425 1242649 ~ 1336191 (+)
si:ch1073-184j22.1 LOC103374727,LOC102078966,LOC107100356,LOC101466520,LOC102199261 other downstream 590990 1322214 ~ 1342351 (+)

Expression


Co-expression Network