si:rp71-1g18.1


Basic Information

Item Value
gene id si:rp71-1g18.1
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 12769369 ~ 12774763 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816944.1
GCCCTCAGTGTTTGGCGCGCCTGCGCCTGAAAGAGACACGCCTCTTCTTTCTGCAAGCCATGTGGCTGTCGTTGCCAAAATGTCTGCGGGCGTCGTGAACCTCGAGGCACAGGTGGAGTCGGTTCTCGGAGCGCTGGTCAAAGCTGCCACGGTGGAGTTAACCAAACTGTTCGAGAGCAGATACCGAGCCTCGGCGCTGGATGTGGATGTGGGCCGCACGGAGGACAAAAAGCAGAATGAGACACTGGATAGTTTAACGACTGAGGACACCACACGTAGCATCGGAGTGCAAGTGGACGAGGACATTTATGTGCCGTTTGAGCTTTCTGGACTCTCAGATGGGGATTGTTTGAGGGACTGCAGGGAGGAGGATAAGGAAGTGGAGGTGGAGGGGTGTCTCATTCCATCAGAAATCCTCCTGTCTGAACATAATGGCCAAGTTGACCCGGAGTGGTCACCTCTGAAGGAACAGGTTGTGGCAAAGACTGTAGATATGGTGGAGTTGAGCGGGATTGAAGCAGAGTCTCCAACTCAAACAAAAGTTGTTTTGCATGTCTCCGCAGAGAAATTAAGACATGGACCTAAGCGAAGCTCACCAGCTAAACAGAAGCTTATCGTGATCCAACCAGATACGTGTGATATCGTTTCTGGAGAGAAGGTTAAGTTTGTCTGCCCGTTGATCCTCAAGCCAGAGTCTCCAGCTCCCAAAACTGACAGTTCAGAGAAGCCTGTTCAAACCGAGCCTCAGCAGGTCTGTGTCAGCACAGCCAAGGGCACCGCCTACAGCCCGTCCCCGTCTGATGGAGCTGTGACTCCTGCTCAGGTTGGGGTTTGGGAACGGATCCGCACGCCAAAGGAGACGGCAAATAACCTCCACATGAAACTGAAACTGACTTCTCCAGAGCAAAAGCTGATGAGTCCATGTGTGGTACAACTGGTGGACGTGCTCACGGTGCCTGAGTCCGCGATGAAGCTTCAGGATGCTGTTGTCAAAGGTCATGATGCTAACTGCAAAACTGGTTGGCCTCTGCCCAAAGACCTCCGCCGCCACCAAGGTCTTCACACTGGCCACCGCCTCTGCTGCTTCACCCCCTGTGAAAACGGCGTTTGGCGGCTTCAGAAGGTGGTCACCCACTCCCGTGATGGATACCCTTGCAGCATCTGTGGGAAGACGTTCAAGCGGAGGAAGATTCTCCGACGGCACGAGCGCTTTCACACTGGAGAAAAACCATACCCGTGCACTATGTGCGCTAAGTCGTTTGCACTGAGGAAGAGCCTCCGACGCCACATGAGGTTTCACACGGGGCAGAGGCCGCACACCTGCACGCAGTGCGGCAAAAGCTTCCGCCTGCGAGACAATCTGAAAGCACACCTGAGGTTTCACTCTGGGGAGAAGCCTTACAACTGTGCTACTTGTGGCAAGATGTTCAGGATCCTAAAAAATCTGGAGAAACACAAAATGAGCCAGTGTGGATTCTTTGTTCCTTCATTCAGGACAATTGCTGGCTTGTAGCAGTGTAAAAACAGCTGTCAGTAGCTGGTTGTGGGGGTTTCACCACTTTCTACCTCAGACTGAAAACACTGTATCGCTTTTGTAGAATACTGTCATGCAATGTTCAGATAAGAAAGTTAAAAGGCTATGAGAGTTTATAAGCATTACTACTACTTGACACTTTTTTGCATAATATCTTTTGAGAAACATGATCAGTCTGCACAAGGGTCCCCTCCACATGGCACAGTTAACCAAGTATACTACATATGTGCTGAAGAACTTCAGATTGGAGATTGTTGTGTCTTGTAAATGGGTTGGAACCGTGGCTGTATAATAATAACTGGATAACAGATCTAAAAAATGGTGCCTATTTAGTTCATTGGAGTTGCTCGCCTGGCTTATACGCTGAAAACTTTTCTAAGCTTCCGGATTGACTTAAGAGATATAGTGCAGTAGTGTTTGGACCGCTGGCCCGCCCACTCAGCCCATAGACTTTTAAATCGCTTTCCTCGGCTGGAGGGAAGTTTTTCAGATATCAAAAGTCCAAGGACTAACAATTCAGAATAGAAATAGTCATAATCAACCTGCAGTTTGTTGTGTCCTGTCAACAGTTTAACAGGCGTCTCTTTTACAATGGTGGCCTATGGGGAAAATCTTCTTTTGGGTTGCAGTGGGATTTCTTGTTGCAATTCCGCAGGTGGCTACTGGAAAAAAATTGTCTGCAGGGCTGAGCGAAATTCCTGGGGGCCTGATTGAAACGCATCAGTAAAATTGTATGCCTTTGTGGGTACAGATAGAAGATATCTGGTTGATTGGATGGGCAAAATACAGATCCTCACCTGCCAGCGTTCCACTAATGTTTCTTTTGGATGTTTATactgtttttatgttattacttttttactttacacTATGTCTCTTATCAAAAAGTGTTTGGTTTTGTATTCATGTTATGATAACTGAATGTATTTAGACTTCTTTCCTGACCTAGATGTCAAAGACTATCCTTGCTGACTTTATAAGACattctgttttaatgttaacgtGTAAATATGGCCAAACAAATTggatgttctctttttttttaaactgtttaacAAGGTTTTTTATATTACCTAATACATGtctgtgttgattttttttttcttacttctgATGCTATATACAATTTTCTTgtgtattaataaaaaatatgttttgtggCAGA

Function

NR:

description
PREDICTED: zinc finger protein 551-like

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816944.1 True 2699 mRNA 0.46 5 12769369 12774763

Neighbor

gene id symbol gene type direction distance location
sall2 LOC104956582,LOC103360303 coding downstream 53623 12706174 ~ 12715746 (-)
mmp14b LOC103360306,LOC103396588 coding downstream 64606 12691995 ~ 12704763 (-)
c11h14orf119 LOC104956585 coding downstream 104668 12663195 ~ 12664701 (-)
dhrs1 dhrs1 coding downstream 142037 12622745 ~ 12627332 (-)
homeza homez coding downstream 147660 12616620 ~ 12621709 (-)
casq1a LOC104956576 coding upstream 3577 12778340 ~ 12786678 (-)
LOC120568729 LOC104956573,LOC103360293 coding upstream 27143 12801906 ~ 12803940 (-)
LOC120567650 LOC100690777,LOC102314387,LOC101469034,LOC102212652 coding upstream 64820 12839583 ~ 12844436 (-)
hhatla hhatl,LOC108238572,LOC103360290,LOC106926958 coding upstream 71365 12846128 ~ 12854319 (-)
LOC120568154 NA coding upstream 98095 12872858 ~ 12885447 (-)
G113933 NA non-coding downstream 10096 12757651 ~ 12759273 (-)
LOC120568043 NA non-coding downstream 168777 12585529 ~ 12600592 (-)
G113828 NA non-coding downstream 412478 12356334 ~ 12356891 (-)
G113810 NA non-coding downstream 413288 12353843 ~ 12356081 (-)
G113806 NA non-coding downstream 540031 12228979 ~ 12229338 (-)
G113945 NA non-coding upstream 15076 12789839 ~ 12793027 (-)
G114129 col6a1,col6a2 non-coding upstream 178617 12953380 ~ 13167706 (-)
LOC120567923 NA non-coding upstream 248507 13023270 ~ 13039958 (-)
G114131 NA non-coding upstream 306851 13081614 ~ 13084384 (-)
G114153 LOC105007837 non-coding upstream 313923 13088686 ~ 13091316 (-)
LOC120568934 LOC104956577 other downstream 744 12760748 ~ 12768625 (-)
nedd8l LOC104931181,LOC104949953,LOC107384241,LOC103360313 other downstream 160800 12601180 ~ 12608569 (-)
G113805 NA other downstream 551102 12218062 ~ 12218267 (-)
LOC120567758 NA other downstream 1880417 10887007 ~ 10888952 (-)
brinp2 brinp2,LOC103369811 other downstream 2502291 10040686 ~ 10267078 (-)
LOC120568578 wdr48 other upstream 191703 12966466 ~ 12975328 (-)
G114152 NA other upstream 309798 13084561 ~ 13088563 (-)
dis3l2 dis3l2 other upstream 694768 13469531 ~ 13482225 (-)
tfr1a NA other upstream 1175108 13949871 ~ 13968811 (-)
LOC120568687 NA other upstream 1838850 14613613 ~ 14618224 (-)

Expression


Co-expression Network