ttc19 (ttc19,LOC107081472)


Basic Information

Item Value
gene id ttc19
gene name ttc19,LOC107081472
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 52608 ~ 63460 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816953.1
GCTCGGGACTTCCGCTCGTAGTGTAAACAGTTAAGATGGCGGCTTGCAACGTTCGCAGCGCTGTCACTCAGACTCTGAGAGGACTCAGAGGGACACGAGGACACCTGAGACACATAGCTGCTGCAAGACAGCAGTGGGACCGCTCTGTGACATCACAGACTGGGCAGGGGAAGCActcggcatgctgggtaaccgTGAGACATGAGTCCATCGGGGGGGACCTCCAGAgcacacagaggaggaggggaggaggaggaggaggaggaggaggaggaggaagaagaagaagaagaggagtgCTGTGGGCGGCCGTTGccttcTCTCTGTTCAGCAGGTCTGATGAAGACCAGCGAGATGAAGCCCAGAGGAAGGAGGACGACATTATCCTGCTGCTGAAGAAAGCCAAGctaagTGTGTATCGGGGACAGCTGCAGGCTGCCTCTGGTTTCCTCCATCAGGCCGTTGCTCTGGCTCATCAGACCCACAACACTCAGGCCATCATCTACACATACAGCCTGATGGCGAACCTGGCCTACGTTCAGGGTCAGCTGGACAGCGCAGAAAAACTCTTCAAAGCAGCGATGAGCTTCCTGCTGTCGGGAGGAACGCCacagGACGACAACGCTGTCATCGAGATGTCTCTGAAACTCGCCACCATCTACGCTGAACAGAACAAggtGGAGCTTGCAGAGCATGGCTTCAGGTTCTGTCTGGAGTCTCTTGAGGCCAAACTGCAGAACCAGAAGGAAACAGCTGCAGAGGAGCTGACAGAGGAGCAGGAGGCTCTGAGGAAGGAGACCCGGCTGCTGCTGGGACTCTGTCTGGACTCCCGGGCTCGGTACCGGGCGTCCTCACTGCAGCTGGAGCAGGCAGGACGGGACTACCAGAAGGCCCTGGACATCTGCTGCTCAGAGCAGGGAGACAGGCACCctcagACTCTGGTGCTGATGAGCGACCTGGCCACCATCTTGGATCTGCAGGGTCGCCATGACGACGCCCTGGCGCTGGTCCAGCAGGCGGTGGATCTGAGCCGCTCCGCGGGTCACCCGGACCAACACGTGCTGCTGGGAAACATGGCGGGCATCCTGCTGCACACAGGCCGGCTCCAGGACTCGGTCCAGCTCTACCACGAGGCTCTGAGTCTGGCCCAGCAGGCCGGAGACCAGGAGGCCGTGACCCAGATCCAGGAGGGACTGGAGGaggtgaagaagaggaggaagcagcagcaggaagaggaggaggagaagaccGATCCTCAGTAGTCAGGTTCCACCCACATCGGCCTCAACTTCAACtaaaattaatatattataataataataataataaatgtt

Function

symbol description
ttc19 Predicted to be involved in mitochondrial respiratory chain complex III assembly. Predicted to act upstream of or within cell division. Predicted to be located in mitochondrion and respirasome. Predicted to be active in mitochondrial inner membrane. Human ortholog(s) of this gene implicated in mitochondrial complex III deficiency nuclear type 2. Orthologous to human TTC19 (tetratricopeptide repeat domain 19).

NR:

description
PREDICTED: tetratricopeptide repeat protein 19, mitochondrial isoform X2

GO: NA

KEGG:

id description
K18169 TTC19; tetratricopeptide repeat protein 19, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816953.1 True 1334 mRNA 0.58 12 52608 63460

Neighbor

gene id symbol gene type direction distance location
LOC120568662 NA coding downstream 6627 274 ~ 45981 (-)
LOC120568960 LOC103372168,LOC101474198,LOC102083149 coding upstream 1117 64577 ~ 89942 (-)
LOC120567752 NA coding upstream 245649 309109 ~ 310062 (-)
LOC120569059 NA coding upstream 262966 326426 ~ 327379 (-)
LOC120569047 LOC100692494,LOC102787312,LOC101472913,LOC107080869 coding upstream 325231 388691 ~ 397504 (-)
LOC120568379 NA coding upstream 335574 399034 ~ 417701 (-)
G110844 NA non-coding downstream 3166 44777 ~ 49442 (-)
G110852 NA non-coding upstream 10383 73843 ~ 90664 (-)
LOC120568736 NA non-coding upstream 29095 92555 ~ 111481 (-)
LOC120568737 NA non-coding upstream 39635 103095 ~ 104273 (-)
G110859 NA non-coding upstream 56194 119654 ~ 141901 (-)
G110846 NA non-coding upstream 86538 149998 ~ 150962 (-)
fastk fastk other upstream 57390 120850 ~ 145053 (-)
LOC120567755 NA other upstream 171797 235257 ~ 243099 (-)
adhfe1 adhfe1 other upstream 194615 258075 ~ 302142 (-)
G110889 LOC100692763,LOC108229211,LOC107383400 other upstream 312252 375712 ~ 382665 (-)
G110957 NA other upstream 690803 754263 ~ 766300 (-)

Expression


Co-expression Network