LOC120569106


Basic Information

Item Value
gene id LOC120569106
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18300412 ~ 18306617 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816977.1
tcacagagagagagagagagagagagagagagagagagaaaaagcctgcagcagcagcaaatgAGACAGAACAACGAGGCGGGAGAggtagaaagagagacagagagggagggaggtggaGAGGGGCCCTGTGTAGGAGAGAGGGCTACAGGGTGAGGAAGAAGGAGTAGAGAAAAAGTTAGgagaagtaggagaaaaaaggTCCAGGGAGAGAAAAGAACGGGTGCAGAGATTAACAACTACAGGAGAGAAGAAGGGAAACAACAGACAGGAAGGAAGGGGAGGGAGAAGTCCTGggtagagagggagaaaaaaaaagagctgaagAAAAGTTTTCTTGTGGGAAGACGCAGATGAGGAAAACAGAGCGAGTGAATGACTGGGCTAGAGGGAGCAGAGAGGGGAGGAAACCAATTGTTTTCTAAGGCGTTTTCCACACTCTTGActtctttggacatgtacacAGAAGGTGCACAAACAACGGGACACCACCGATTTATTCAGCACATCAACACCACCAACCCCTGCTCCTGCCAGCACTGCGTCCACTATGAGCAGCCAGCGTACAGCCATCACGGTGGGCCGGGACACCAACCAGCATCAGCCAAACAGACAGACCACCCATCCCTGGACTGCAGGAGAGACACCCAGGCTCCTCGGGTTAAAGACGTAGGAGGGAGAGCTTTCATAGTGGACAGAGCTGAGAGAAGCGGTCATCGCAGCCCACAGAGGAGGCCTGTGTTCGCAGGGCCAGGCCTTTACAGCCAGTCAGATGACTTGAGCCAAGTTTACCCCTGGGAGTTGAACCCTGCCCAGTGGAGCTACCCGCTGGAGCCTGGGGTGAGACACTACCCGTCTGTCAGAGAACAGTGTGGCTGTGTGGTGCGCAGCGACACCAGGGCACACCTCTTTAGCGCCGGGATACCACATCCTCTCCCCCATCttcaggtcaaaggtcaagggTACAGGCACAGGAGGACGGTCAGGTATGTCTCcgtggatgaggaggaggaaagttGTAGATGCACCTCTGAGAACTATCATGCGGAGCAACACAATCCTCATCTGGGTCATTTACACATGCCAAATGGCCACTGTGGACCAAGGCCTGTGTTCTTTCAGGGAGGGGAGGAAAGAGATAGCCATCAGGACCGGGGAAGTCTGAAGGCTGGATCAGAGGAGGGCTGTAATGGACGCAGTGGCTCTCACAAAGGTTTCTTCTCTACTGAAGTCCCACAAAAACACTTGAACCAAAGCCGACAGAAGGGTGTCTGCTTCCCTCCATCTGGCATCACCAGTCCAGAGCCCTCAAAATCGACAACCAACAGCGACCACCAGCACCAGGGTTCAGAGGTGGTGAAGCAGAAGAGGAGGCAGGATTCGGTGAGGGATCAAATCAGACAAGTGGTGACAGATCTGGAGGATGTGTTGGGGGGTTTGAAGCAAGTTCACGTGGAGATGAAAGAGGTGGTCCAGCAGATTGATCGTCTCACAGCCACAATCGACCTCAGCGCGGAGGTGCCCTGCATCACTCAGGGCTCGTCCAGTAACTTTCATGGTTCAACTCATCCAGGTGACCTCAGGCTGGCACCGCTGCCCAATCACAAGCCTGCTCCAGTCCCGGCTTTGCAACACATCGACAAAGAACGCATCATCTTAAGAACTAACTCTCCCTCCCCTGTTCACTTGGCATCGGTCGTCAAAACCAGCCGCTTCACCCCACCCAGCCACAGTAAGGATATCAACCACGAAAGGCCAGGTATAAATGGCCACCCGCCTCACCTCTATCCCCCCAGAGACACCAACCACGTTGGCCAAACTCATCCCGAGCCCCACCCACAGAGCCTAGACCCTAAGGTCATTATTGGTAACAGCACCTCCAGTTCAAAGACTCAGAAGCCTCCTCTGTACCCTCAAAACGGACGCTGTGGGAAGGGCCCATACCCGCCTCCCAAGCCTGTGAGGACCTCTGCCTACCCGGGGAGAGGCTGCCAGAGCACCAGTATGGTGTGAAAGAGGGGGGTGGTCTGCCCCAGTGCCATGGGGGCCTGAAACATGAGACCCTGCTGCAGTAAGTGGAGGTCAGAGTGGGACCAGGCAGGGGAACAACTCATGCAGGAGCTGATGACACAGAGACAAGCTGTCAGTTGGTGGAAACAGAATACGGCCTGAAGGTGGGGATATTTCCAAAGGGAAAACTATCCCCCAAGAGTCAACCTACAACTGTATGTCACGCGAGCACAGAAGCATGGCGGAGTGGCAGTCAAACCTCTCTGAGAATTTATTCTTTTACTGTTTCTGGTGAGGTAGTGGCAAATAATGATAAGGATAAACTGTGAACTGCTGCTCAACAACCATTAATAGAAAGGTATCTTTTAATGACagtgttaatttattttatactaTTTTATATTGCAAATAAAATCGATTTTCAGGCAGCTTACACCAGTCTGAATACTACCTAACCTGACAAAGCATGATTTCAGACTTTTACAAATCTGCATCATGATGTAGTTATTTTGGCAAATAAACAAATGATCCCAATATGA
>XM_039816978.1
tcacagagagagagagagagagagagagagagagagagaaaaagcctgcagcagcagcaaatgAGACAGAACAACGAGGCGGGAGAggtagaaagagagacagagagggagggaggtggaGAGGGGCCCTGTGTAGGAGAGAGGGCTACAGGGTGAGGAAGAAGGAGTAGAGAAAAAGTTAGgagaagtaggagaaaaaaggTCCAGGGAGAGAAAAGAACGGGTGCAGAGATTAACAACTACAGGAGAGAAGAAGGGAAACAACAGACAGGAAGGAAGGGGAGGGAGAAGTCCTGggtagagagggagaaaaaaaaagagctgaagAAAAGTTTTCTTGTGGGAAGACGCAGATGAGGAAAACAGAGCGAGTGAATGACTGGGCTAGAGGGAGCAGAGAGGGGAGGAAACCAATTGTTTTCTAAGGCGTTTTCCACACTCTTGActtctttggacatgtacacAGAAGGTGCACAAACAACGGGACACCACCGATTTATTCAGCACATCAACACCACCAACCCCTGCTCCTGCCAGCACTGCGTCCACTATGAGCAGCCAGCGTACAGCCATCACGGTGGGCCGGGACACCAACCAGCATCAGCCAAACAGACAGACCACCCATCCCTGGACTGCAGGAGAGACACCCAGGCTCCTCGGGTTAAAGACGTAGGAGGGAGAGCTTTCATAGTGGACAGAGCTGAGAGAAGCGGTCATCGCAGCCCACAGAGGAGGCCTGTGTTCGCAGGGCCAGGCCTTTACAGCCAGTCAGATGACTTGAGCCAAGTTTACCCCTGGGAGTTGAACCCTGCCCAGTGGAGCTACCCGCTGGAGCCTGGGGTGAGACACTACCCGTCTGTCAGAGAACAGTGTGGCTGTGTGGTGCGCAGCGACACCAGGGCACACCTCTTTAGCGCCGGGATACCACATCCTCTCCCCCATCttcaggtcaaaggtcaagggTACAGGCACAGGAGGACGGTCAGGTATGTCTCcgtggatgaggaggaggaaagttGTAGATGCACCTCTGAGAACTATCATGCGGAGCAACACAATCCTCATCTGGGTCATTTACACATGCCAAATGGCCACTGTGGACCAAGGCCTGTGTTCTTTCAGGGAGGGGAGGAAAGAGATAGCCATCAGGACCGGGGAAGTCTGAAGGCTGGATCAGAGGAGGGCTGTAATGGACGCAGTGGCTCTCACAAAGGTTTCTTCTCTACTGAAGTCCCACAAAAACACTTGAACCAAAGCCGACAGAAGGGTGTCTGCTTCCCTCCATCTGGCATCACCAGTCCAGAGCCCTCAAAATCGACAACCAACAGCGACCACCAGCACCAGGGTTCAGAGGTGGTGAAGCAGAAGAGGAGGCAGGATTCGGTGAGGGATCAAATCAGACAAGTGGTGACAGATCTGGAGGATGTGTTGGGGGGTTTGAAGCAAGTTCACGTGGAGATGAAAGAGGTGGTCCAGCAGATTGATCGTCTCACAGCCACAATCGACCTCAGCGCGGAGGTGCCCTGCATCACTCAGGGCTCGTCCAGTAACTTTCATGGTTCAACTCATCCAGGTGACCTCAGGCTGGCACCGCTGCCCAATCACAAGCCTGCTCCAGTCCCGGCTTTGCAACACATCGACAAAGAACGCATCATCTTAAGAACTAACTCTCCCTCCCCTGTTCACTTGGCATCGGTCGTCAAAACCAGCCGCTTCACCCCACCCAGCCACAGTAAGGATATCAACCACGAAAGGCCAGGTATAAATGGCCACCCGCCTCACCTCTATCCCCCCAGAGACACCAACCACGTTGGCCAAACTCATCCCGAGCCCCACCCACAGAGCCTAGACCCTAAGGTCATTATTGGTAACAGCACCTCCAGTTCAAAGACTCAGAAGCCTCCTCTGTACCCTCAAAACGGACGCTGTGGGAAGGGCCCATACCCGCCTCCCAAGCCTGTGAGGACCTCTGCCTACCCGGGGAGAGGCTGCCAGAGCACCAGTATGGTGTGAAAGAGGGGGGTGGTCTGCCCCAGTGCCATGGGGGCCTGAAACATGAGACCCTGCTGCAGTAAGTGGAGGTCAGAGTGGGACCAGGCAGGGGAACAACTCATGGAGCTGATGACACAGAGACAAGCTGTCAGTTGGTGGAAACAGAATACGGCCTGAAGGTGGGGATATTTCCAAAGGGAAAACTATCCCCCAAGAGTCAACCTACAACTGTATGTCACGCGAGCACAGAAGCATGGCGGAGTGGCAGTCAAACCTCTCTGAGAATTTATTCTTTTACTGTTTCTGGTGAGGTAGTGGCAAATAATGATAAGGATAAACTGTGAACTGCTGCTCAACAACCATTAATAGAAAGGTATCTTTTAATGACagtgttaatttattttatactaTTTTATATTGCAAATAAAATCGATTTTCAGGCAGCTTACACCAGTCTGAATACTACCTAACCTGACAAAGCATGATTTCAGACTTTTACAAATCTGCATCATGATGTAGTTATTTTGGCAAATAAACAAATGATCCCAATATGA

Function

GO: NA

KEGG:

id description
ko04350 TGF-beta signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816977.1 True 2549 mRNA 0.52 3 18300412 18306617
XM_039816978.1 False 2546 mRNA 0.52 3 18300412 18306617

Neighbor

gene id symbol gene type direction distance location
LOC120568294 LOC104961359,LOC103353055,LOC100705071,LOC102788160 coding downstream 56154 18236790 ~ 18244258 (-)
LOC120568289 LOC102296215,LOC102788438,LOC102202758,LOC101476248,LOC100704618 coding downstream 125086 18171649 ~ 18175326 (-)
LOC120568287 LOC103353056 coding downstream 129923 18151116 ~ 18170489 (-)
LOC120568865 tpm4,LOC107383605,LOC102218802,LOC103146061,LOC103479776,LOC100703626,LOC102199996,LOC106537044,LOC101474423,LOC102789012,LOC106914771,LOC108232925,LOC106936184 coding downstream 229975 18060695 ~ 18070437 (-)
ranbp3b ranbp3 coding downstream 280516 17999900 ~ 18019896 (-)
phc3 NA coding upstream 201838 18508455 ~ 18521023 (-)
gpr160 NA coding upstream 296690 18603307 ~ 18604790 (-)
sec62 sec62,LOC102781860 coding upstream 322357 18628974 ~ 18646415 (-)
samd7 samd7,LOC102781561 coding upstream 340464 18647081 ~ 18655196 (-)
ackr4a LOC103360849 coding upstream 530055 18836672 ~ 18841174 (-)
G115722 NA non-coding downstream 4624 18295562 ~ 18295788 (-)
LOC120568297 LOC101477959,LOC103353052,LOC102786864,LOC103479784 non-coding downstream 14357 18270334 ~ 18286055 (-)
G115710 NA non-coding downstream 40128 18259924 ~ 18260284 (-)
G115691 NA non-coding downstream 65897 18232868 ~ 18234515 (-)
G115644 ap1m1,LOC107750937 non-coding downstream 216568 18081198 ~ 18083844 (-)
G115738 NA non-coding upstream 71783 18378400 ~ 18385959 (-)
G115782 NA non-coding upstream 147416 18454033 ~ 18456002 (-)
LOC120568822 NA non-coding upstream 228030 18534647 ~ 18535613 (-)
G115848 NA non-coding upstream 308184 18614801 ~ 18615272 (-)
G115851 LOC103353035 non-coding upstream 314216 18620833 ~ 18621220 (-)
LOC120568693 rab8a,LOC103479775,LOC101170877,LOC108232971,LOC106516875,LOC107687930,LOC102219409,LOC104931433,LOC104950312,LOC105022474 other downstream 242253 18052984 ~ 18058159 (-)
ly97.3 NA other downstream 1191508 17039800 ~ 17108904 (-)
G115406 crygn,LOC100699485,LOC103353965,LOC103146339,LOC103479740 other downstream 1255350 17043126 ~ 17045062 (-)
epb41l3b epb41l3,LOC102298622,LOC106534525 other downstream 1488494 16756331 ~ 16811918 (-)
G115312 ralbp1,LOC102778314 other downstream 1660600 16637108 ~ 16639812 (-)
sppl2 sppl2b other upstream 174053 18480670 ~ 18494488 (-)
LOC120568909 LOC103353029,LOC104955147,LOC101484702,LOC102780695 other upstream 396447 18703064 ~ 18720587 (-)
G115941 NA other upstream 538288 18844905 ~ 18846277 (-)
LOC120568972 LOC104949378,LOC103135673,LOC106524506,LOC103479814,LOC106906961,LOC102205181 other upstream 625357 18931974 ~ 18935491 (-)
G116084 LOC104943419,LOC103361571,LOC101479291 other upstream 915174 19221791 ~ 19222726 (-)

Expression


Co-expression Network