tmem53 (tmem53,LOC102777675)


Basic Information

Item Value
gene id tmem53
gene name tmem53,LOC102777675
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 11538054 ~ 11540262 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817009.1
CAACCACATAAGAAGAAGAAGCGGGagtatgtgtatgtaatagTGCAGTGACCTGACAGCCCATCGACCTGTCTGCAGTGTGTAACGTATTTGCCACAATCTGGCGTTGCTAATTAAAGCGCTCTAGCTTCTCTATAACCCTTTTTTCCAACAGCCAAATGAACCGAACGTTAACGTTGGAGAACGACAGTTGATACTCTCGCGCACAGAAATGGCAGACGATGAAATAGACTACAATATCGTGTTTCCAGATGCGGGGACATCGGAGAGACACTGGCAGGGGACAAAGGAGCCAGTTGTGATTCTGTTGGGCTGGGCTGGTTGCAAAGACAAACACCTCTCCAAATACAGCTCCATCTACAATGAACAGGGATGTGTCACCATCCGCTACACCGCTCCCTTGAAGACAGTCTTCATCTCAGAGTCGTTTGGCTACAAGGAGCTGAGCAGTACGGCCCTTAAGTTGCTGGAGATTCTCTATGACTATGAGGTGGAGAACAGTCCTATTTTCTTTCACATATTCAGCAATGGTGGCTTCATGCTGTACCGTTACATTGCAGATTTGTTGCACAATGATAAACAGTTCAGTTCCTTGTGTGTGATTGGGGCCTTAGTGGACAGTGCCCCAGGTAGTGGGAACGTCCGCGGGGCCCTGCGTGCACTGGCGGCCACCCTGGGGCCCAAAATAACTCCTGTTTTAAGGTACGTCCTCTTGGCGCTATTCGCAGTGACTGTTTTCCTGTTGCGAGTCGTGCTGTACCCCTTGACCAAGTACATCCACAAGAACCACTATGACGCCGTGCAGGAGCGTCCGCCCGCCTGGCCTCATTTCTACCTGTACTCCCGAGCTGACCAGGTGATCAGGCACACAGACATCAAGGTCTTTGTGGAGACCCTGAAGCAGAAAGGCGTCCCGGTGGAcagttttgattttgtttccaGTCCCCACGTTGGTCATTTCCGGGACTTTCCTGAGCAGTATGCTCTGAAGTGCCGCAGTTTCCTGGTTGCTTGCATGAAGGACTTGGAAGGGAACGAGACAAAGAAGAGACAGAGGGTTCCGAATCAATGAAACGCGGAGAGAAGCTCACACGATTTTGCTAACCCTCTGTTAAGCTGTCTTGCGAAGAAAATCAGACCAAATCAGACCAACTTGGTTTTTCTCAGTGGTCTGAAAAATCAGTTAGAAAATGAGGCTGACATTTTTTTGCAGGACTGCTGGAATTTGAGCTGAACTAGTACAAGATCTCAATGCTTTTCTGTCCCAGTGCACATAATGGCAAAGTTCCACACATGTGGTCTAGGTGTACTAATCCATGTCTAGAAAACCAGCCATATGAAATACTGTAATTCATATACCCCTGAAGTGTGTGGCCTAACCCTGCCAACTCCAATGTTTTTGCAACAGTCATATACTATAtgtaaaaataacaatacaaacaacattggaaaataaatcctttaggataatttaaatatttaatattgaTGTGAAATGTGATGCATTGTACATTAGTAGTAGTGATTCTAAATCTGAGGCTGTATTGGATAATCATTTATATCTtctatttattacatttacaatgtATAGTTTTAATCTAACAATTTGTCATTAATATTAGATCACAAGGGCACTTAAAATAAAGGCGACAAAATTCAAAAaggaattaaaaaagaaatctcaaTTGTTGCCTtaatcagacttttttttttttggggggggggggtccataAATTGTAGAACACCCAGCCCTAATATGTGATACACAATTGATTTAGTTCAAGGAAAATGTGATTGACAATGAATGTATATGTCCAGAACAACTattgtgttctttttttacTGATGTGCCTTCAATAAAGTAGAATGCTCATA

Function

symbol description
tmem53 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM53 (transmembrane protein 53).

NR:

description
transmembrane protein 53 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817009.1 True 1876 mRNA 0.43 3 11538054 11540262

Neighbor

gene id symbol gene type direction distance location
toe1 NA coding upstream 867 11530838 ~ 11537187 (+)
urod urod coding upstream 161472 11365369 ~ 11376582 (+)
lyn lyn,LOC100711419,LOC102310923,LOC101477890 coding upstream 173358 11346445 ~ 11364696 (+)
LOC120567621 LOC103360515,LOC104929875 coding upstream 398170 11128019 ~ 11139884 (+)
LOC120567856 LOC104929871,LOC103355149,LOC100690953,LOC102207159 coding upstream 414579 11100278 ~ 11123475 (+)
rnf220a rnf220,LOC103363915,LOC101079104,LOC103396675,LOC102292039,LOC102777210 coding downstream 181855 11722117 ~ 11874494 (+)
klf17 klf2 coding downstream 423716 11963978 ~ 11966608 (+)
slc6a9 slc6a9,LOC102776426 coding downstream 440877 11981139 ~ 12062243 (+)
lrrc24 LOC103370491,LOC104954089,LOC102776146,LOC102302164 coding downstream 534714 12074976 ~ 12089561 (+)
prmt5 prmt5 coding downstream 1015424 12555686 ~ 12562978 (+)
G113620 NA non-coding upstream 12804 11524978 ~ 11525250 (+)
G113619 NA non-coding upstream 13286 11519300 ~ 11524768 (+)
LOC120567863 NA non-coding upstream 482248 11046556 ~ 11055806 (+)
G113498 LOC104957117 non-coding upstream 609811 10926456 ~ 10928243 (+)
G113492 NA non-coding upstream 650387 10886992 ~ 10887667 (+)
LOC120568871 NA non-coding downstream 42642 11582904 ~ 11694250 (+)
G113682 NA non-coding downstream 44174 11584436 ~ 11584636 (+)
G113681 NA non-coding downstream 168112 11708374 ~ 11722041 (+)
G113689 NA non-coding downstream 287141 11827403 ~ 11887669 (+)
LOC120568095 NA non-coding downstream 338451 11878713 ~ 11954877 (+)
pkia pkia,LOC102780447,LOC102205080 other upstream 191829 11332568 ~ 11346225 (+)
LOC120568835 NA other upstream 651576 10885595 ~ 10886478 (+)
G113130 NA other upstream 2535486 8944477 ~ 9002568 (+)
pdca LOC103370803,LOC104933924,LOC101478313,LOC102200750,LOC100699795,LOC102301525 other upstream 2635207 8895927 ~ 8902847 (+)
LOC120568881 mfsd12,LOC104931866 other upstream 2712243 8812897 ~ 8825811 (+)
abhd4 abhd4 other downstream 582407 12122669 ~ 12128022 (+)
LOC120568189 nop9 other downstream 617187 12157449 ~ 12166277 (+)
ap1g2 LOC106903824,LOC103138413,LOC106934762,LOC101486457,LOC103478890,LOC100694377 other downstream 1042380 12582642 ~ 12599840 (+)
LOC120568152 LOC104963178 other downstream 1361277 12901539 ~ 12907243 (+)
LOC120567760 LOC103360284,LOC108238605,LOC104963178 other downstream 1371177 12911439 ~ 12919198 (+)

Expression


Co-expression Network