prtfdc1b (LOC103364899,LOC104918289,LOC107083373)


Basic Information

Item Value
gene id prtfdc1b
gene name LOC103364899,LOC104918289,LOC107083373
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 23725487 ~ 23734384 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817010.1
TGCTGCCCCTGGTGGCAGCAGTACGTATAACACAACACAGAGGGATGTAGAGGGAAAGAGGGAACATGATGCTCCTCCTCTCTCCGCACGTTGCCAAATCCTTCTGAAGGCTTGCTCTAACACTTACCCGAAACAAGAGCCTTTTTTGTGTTTCGGCAGGAAAACAACATGGCAGACGTTGCCGTCCAATCCGACGGAAGAAGCGGCGGAATTGTGATTAAGGATGACTGGCCAGGCTACAGTTTAGACCTCTTCAGCTATCCAGCTCACTACTCTGGGGATATAGACTGTGTCATCATTCCGCATGGCGTGATTATGGACAGGACAGAACGTCTGGCTCGAAACATCATGGATGACCTGGGGGACCATGACATCGTGGTGCTGTGTGTGCTGAAAGGAGGCTACCAGTTCTGTGCAGACCTGGTGGAAAGGATCAAGGCTCTCAGCCGCAACTCCAATCGCACAATCCCCATGAGAGTCCACTTCATCCGGCTCAAGAGCTACCTGAATGACCAGTCGACAGAGGATCTTCACATACTCGGAGCAGAGGATTTGTCTTTTTTAGCTGGAAAGAACGTACTGATTGTGGAGGCCATTGTAGGCACCGGAAAGACAATGAAAGCTCTCCTGAAGCATGTTGAAGCCTTCAGGCCCAAAATGATCAAAGTAGCAGGATTGCTGGTGAAGAGAGTGCCACATAACTCAGCATGTCTTCCTGACTATGTCGGCTTTGAGATACCCGATCGGTTTGTGGTTGGATATGCCTTAGACTACAATGAGTATTTTAGAGACTTAAATCATATCTGTGTGATCAGCGAAAGTGGGAAGATGAAatacaagatttaaaaaaaggacgGCAAAAGGAGGCGACTGTCACACAGATGTCATCTGCAAGCCTGAACATTTTCCCTGAGATTCCATTCATTTACAGCTGCTATCGTGACATTTGATCTCAAGCATCCCCTGTTTTGTTATAACATTCCTTCTGTGAAACGTTAATCCGTTTAACAATAGACACTGACATTTAACTGGTAATTTTAGCAAAGCATGTGCATGCTTTACCATGTTTTTCTAAGTTGCAACTTCATTCTTCATGTTTACAGAAGTAATTCATTCAGTAGATGTTTATGCTAGGGTACTACTACTGTTTGCCTTTGTTAGTTTGACTAACAAATGACATCTCAATTTTACTTCTTTGTGTATGCAATGTAAATAACTTCATAATCATTACCTGTatgaatgtgattttttttaagtcagtGTGTGATGAGGTAACAAAGGAAACTGCTTATTTTAACATGAAAGGGAGTTGTTTTATTAGGAAAGTAGTGATATACTGTAGTTTTACATTTTCTACACCTGTACATTGCCTTTTTGATGTTTCATTAGGTAGTTCTCCTGCTGTCACCTTTAATGCTCAGGGGCAAACAAAGTAGTTTTGTAAAAACTAAGTGCACTAACTACATTACACAAACTACTACCAACTATGTACcccttattgtttttttaagtatttgagGTGTAGTGGGGTACTTTTgtcatttctgcattttcttttataatTTAACATACAGTAAAGTATTTTTTAGCATTTCAGTGTTATCGACCACTGTATTATTCTCACATTCTCTGTTGCCTTACGAAATGCATTTTCAGATGTTGATAAAAAATTAGTTTAATGTGG

Function

NR:

description
PREDICTED: hypoxanthine-guanine phosphoribosyltransferase-like

GO:

id name namespace
GO:0006166 purine ribonucleoside salvage biological_process
GO:0005737 cytoplasm cellular_component
GO:0004422 hypoxanthine phosphoribosyltransferase activity molecular_function

KEGG:

id description
K24196 PRTFDC1; phosphoribosyltransferase domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817010.1 True 1684 mRNA 0.41 9 23725487 23734384

Neighbor

gene id symbol gene type direction distance location
arhgap21b NA coding downstream 1456 23682735 ~ 23724031 (-)
kmt2cb NA coding downstream 154124 23492963 ~ 23571363 (-)
LOC120568611 lama3 coding downstream 303710 23363029 ~ 23421777 (-)
LOC120568995 hrh3,hrh4,LOC103143019,LOC103479572,LOC102223873,LOC108239625 coding downstream 407797 23313367 ~ 23317690 (-)
psma8 psma8,LOC102789190,LOC101062730 coding downstream 548365 23172058 ~ 23177122 (-)
LOC120568659 LOC104941252,LOC103479586,LOC107083372,LOC104918287,LOC103143038,LOC100704482,LOC107383950,LOC101069707,LOC103396165,LOC106929027,LOC101464457 coding upstream 2594 23736978 ~ 23786041 (-)
kncn kncn coding upstream 126787 23861171 ~ 23865766 (-)
trnai-aau_23 NA coding upstream 133568 23867952 ~ 23868025 (-)
trnap-agg_8 NA coding upstream 134771 23869155 ~ 23869226 (-)
itm2cb itm2c,LOC103366712 coding upstream 171462 23905846 ~ 23912764 (-)
G117265 NA non-coding downstream 263191 23446358 ~ 23462296 (-)
G117206 LOC101469337 non-coding downstream 383564 23341354 ~ 23341923 (-)
G117205 osbpl1a,LOC100709115,LOC102786734 non-coding downstream 384172 23339536 ~ 23341315 (-)
G117203 LOC103364864 non-coding downstream 387869 23331379 ~ 23337618 (-)
G117158 NA non-coding downstream 559731 23165465 ~ 23165756 (-)
G117302 NA non-coding upstream 51706 23786090 ~ 23786473 (-)
G117311 LOC103366706,LOC100534445,LOC107383951 non-coding upstream 81507 23815891 ~ 23819966 (-)
G117324 NA non-coding upstream 107862 23842246 ~ 23843595 (-)
LOC120568991 NA non-coding upstream 109447 23843831 ~ 23849958 (-)
G117337 NA non-coding upstream 152080 23886464 ~ 23888799 (-)
LOC120568062 LOC108239646,LOC104957657,LOC101467149,LOC102793932,LOC103364894 other downstream 233875 23468620 ~ 23491612 (-)
G117259 vps4b other downstream 294495 23430366 ~ 23430992 (-)
LOC120569135 ttc39c,LOC102790819 other downstream 363907 23345718 ~ 23361580 (-)
G116969 NA other downstream 1456928 22261998 ~ 22268559 (-)
higd1a higd1a other downstream 2714911 21008048 ~ 21010576 (-)
LOC120568990 LOC101487892,LOC104941256 other upstream 116689 23851073 ~ 23856621 (-)
G117560 NA other upstream 764996 24499380 ~ 24536496 (-)
G117732 NA other upstream 1187819 24922203 ~ 24923318 (-)
camk2n1a camk2n2 other upstream 2581386 26315770 ~ 26319595 (-)
G118175 NA other upstream 2927237 26661621 ~ 26665952 (-)

Expression


Co-expression Network