prdx1 (prdx1,LOC103140020)


Basic Information

Item Value
gene id prdx1
gene name prdx1,LOC103140020
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 14679407 ~ 14683559 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817011.1
GTTGAGATTGGGGAACTGGACTGAAGTGGGCTGTAGTCACGTTCTGAACTTATCGCGAGAAGTACGCCGTGGTATAAATTCCTCAATCGAGACTGTCAGCTCGTGCACTCTCTTCTCCTGTTTCTGTCGGTGTGGACTGATCAAAGCTGAGTTAGACTGAAGATGGCTGCAGGCAAGGCTCAAATTGGAAAGCTGGCCCCGGACTTCACGGCTAAGGCGGTGATGCCAGACGGACAGTTCAACGACCTGAAGCTGTCCGACTACAGAGGGAAATATGTTATCTTTTTCTTCTATCCACTGGACTTCACCTTTGTGTGTCCAACTGAGATCATCGCTTTCAGCGATGCAGCCGAAGACTTCAGGAAGATCGGCTGCGAGATCATCGCCGCCTCTGTTGACTCACACTTCTCCCATTTCGCATGGACCAACACACCACGAAAGCAGGGCGGTCTGGGTGCCATGAAGATTCCCCTAGTATCTGACACACGGCGCACCATCTCCACAGATTATGGTGTCCTAAAGGAGGATGAGGGCATCGCCTACAGggGTCTGTTCATCATTGACGACAAGGGCATCCTGAGACAGATCACCATCAACGACCTCCCAGTTGGACGCTCTGTTGACGAGACTATGCGTTTGGTCCAAGCCTTTCAGTTCACTGACAAGCACGGAGAAGTCTGCCCAGCCGGCTGGAAACCAGGAAGTGACACCATCAAGCCTGACGTCCAGAAGAGCAAAGACTTCTTCTCCAAGCAGTAATAAACCCAAACCCAGAGTCTGCAGCCTGCTGTAGATTTCATTTAGAGATTACATTTCCAGAGAACAATATTTGTCAGCCACTGTGCCTGTGGAGGAGTGGTTAGGAGACAGTTTTTGTAGTCAACATGATATTTTGTCTGTAGAGTGAATAGTGCACTTATGACCAAAGTATATCATTGTGTAATTATGTTGTGGTAATGTATGCTATTTTCACTGTCGGACTGAGATAAATGTCTGTTTGTTCTTTCATGTCATATACCTTACTATTGTTAGATGCAAAGGactataaaaacatttttattgaaaagaA

Function

symbol description
prdx1 Predicted to enable thioredoxin peroxidase activity. Acts upstream of or within leukocyte activation. Part of protein-containing complex. Is expressed in several structures, including diencephalon; digestive system; epidermis; lateral line; and otic vesicle. Human ortholog(s) of this gene implicated in methylmalonic aciduria and homocystinuria type cblC. Orthologous to human PRDX1 (peroxiredoxin 1).

NR:

description
peroxiredoxin

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016209 antioxidant activity molecular_function
GO:0051920 peroxiredoxin activity molecular_function

KEGG:

id description
K13279 PRDX1; peroxiredoxin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817011.1 True 1069 mRNA 0.47 6 14679407 14683559

Neighbor

gene id symbol gene type direction distance location
zte38 LOC104949683 coding downstream 1463 14674417 ~ 14677944 (-)
uck2b LOC104935075,LOC103363741,LOC102787436,LOC100703739,LOC101481213 coding downstream 12202 14658872 ~ 14667205 (-)
czib LOC103363808,LOC100704007 coding downstream 21135 14653408 ~ 14658272 (-)
scp2a scp2 coding downstream 28031 14626167 ~ 14651376 (-)
LOC120567803 LOC104934906,LOC103364073,LOC103479012 coding downstream 114702 14561507 ~ 14564705 (-)
gpbp1l1 gpbp1l1 coding upstream 10890 14694449 ~ 14708330 (-)
LOC120567642 ipp coding upstream 26350 14709909 ~ 14715157 (-)
LOC120567646 pik3r3,LOC103362845,LOC104935068 coding upstream 36722 14720281 ~ 14727430 (-)
serbp1b serbp1,LOC108238257 coding upstream 114555 14798114 ~ 14809624 (-)
LOC120569101 LOC103362378,LOC100708654,LOC102196187 coding upstream 128103 14811662 ~ 14816596 (-)
G114544 NA non-coding downstream 161514 14517476 ~ 14517893 (-)
G114530 NA non-coding downstream 213159 14418851 ~ 14466248 (-)
G114538 LOC104949927,LOC103364340 non-coding downstream 231474 14440881 ~ 14447933 (-)
G114518 NA non-coding downstream 358644 14319343 ~ 14320763 (-)
LOC120568036 NA non-coding downstream 507933 14124703 ~ 14171474 (-)
G114633 NA non-coding upstream 5898 14689457 ~ 14690066 (-)
G114636 NA non-coding upstream 10073 14693632 ~ 14693957 (-)
G114661 NA non-coding upstream 67686 14751245 ~ 14751528 (-)
LOC120569096 NA non-coding upstream 96717 14780276 ~ 14782472 (-)
LOC120568695 NA non-coding upstream 271019 14954578 ~ 14958403 (-)
LOC120568687 NA other downstream 61183 14613613 ~ 14618224 (-)
tfr1a NA other downstream 710596 13949871 ~ 13968811 (-)
dis3l2 dis3l2 other downstream 1197182 13469531 ~ 13482225 (-)
G114152 NA other downstream 1590844 13084561 ~ 13088563 (-)
LOC120568578 wdr48 other downstream 1704079 12966466 ~ 12975328 (-)
G114680 NA other upstream 112359 14795918 ~ 14797044 (-)
mfsd8l2 LOC102304717,LOC102799006,LOC108238243,LOC103479065 other upstream 606523 15290082 ~ 15304610 (-)
G115164 btf3l4 other upstream 1460601 16144160 ~ 16148121 (-)
cc2d1b cc2d1b other upstream 1499095 16182654 ~ 16201698 (-)
mppe1 mppe1,LOC102781954 other upstream 1633859 16317418 ~ 16327426 (-)

Expression


Co-expression Network