LOC120569132 (LOC104948641,LOC103362219,LOC104938220,LOC103396234)


Basic Information

Item Value
gene id LOC120569132
gene name LOC104948641,LOC103362219,LOC104938220,LOC103396234
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 13163839 ~ 13166831 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817024.1
ACGTGGATGCAGTGTAAATAAGTCTCAACTTCACTCCGTTGAGAAAGGAGAAAGACTGCCTCCGTCATGTCGTACTATGAGCATATCTTCTTCGACTATGACTTCAACGACaccggctcaggttctggttctggtgACCTGGGAGGGGATCTGGAGGAGCCCTGTGACGTGGAGCATGTGATGACTGCTAACATTCAGCAGGTCTTCTTGCCTGTTGTATATGCCCTCATCTTCACACTGGGCATCACTGGAAACGGCCTGGTTGTCATAGTCCTGGGCTGCCAACGCAGGTCAAAGTGTAGCCTCACAGACCGATATCGCCTGCATCTCTCAGCTGCTGATCTCCTCTTTGTTCTGGCTCTGCCGTTCTGGGCCGTGGACTCAGCCTTGGCCGACTGGCGTTTCGGAGCGGCCACCTGCGTTGGTGTGCACGTTATCTACACGGTCAACCTGTACGGCAGCGTGCTCATCCTGGCATTCATCAGCCTGGACCGCTACCTGGCAGTGGTCCGagccacagacacaaacactggTGGGCTGAGGCAACTGCTGGCACACAAACTGGTTTATGTGGGTGCCTGGCTGCCTGCCGGCCTCCTGGCAGTGCCTGACTTGATATTTGCTCGGACTCAGGAAGGAGGCGAGGGGGCCACTCTGTGCCAGCGATTCTACCCAGAAGACAACGCTCCTCTCTGGGTTGCAGTCTTCCACCTCCAGCTGGTCCTGGTGGGTCTGGTGATCCCAGGCTTGGTCCTCCTGGTGTGTTACTGCGTCATTGTCACCAGGCTGACCCGGGGCCCGCTTGGGGGCCAGAGGCAGAAGCGGCGAGCGGTCAGGACCACCATCGCGTTGGTTCTCTGCTTCTTCGTCTGCTGGCTGCCATACGGAGTGGGCATCTTTGTGGACGCTCTGCTGCGCCTGGAGGTCCTGCCCcgtggctgcagcctggaggcCGTCCTGGGCGTGTGGCTGGGGGTGGCTGAGCCCATGGCATTTGCACACTGCTGCCTGAACCCGCTGCTGTACGCCTTCCTGGGGGCAGGGTTCAAGAGTTCGGCCCGAAGAGCCCTCACTCTGAGCCGAGCCTCCAGTTTGAAGATTTTACCACGAAGACGCCCGGGGGCCTCCACGACCACAGAGTCAGAGTCCTCCAGTTTACATTCCAGCTAGTGTTTGCTAatgctgtatatatgtatattgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttaaggtgTCTGAGAAAGTAAGGAGCAGTCTGCTGGCCCACGACTTGTCTTCTCCCTCACTGTCAGGTTTCTCCTGTAAATACTGTTATTATATTTGTTTTCAGGGCTGCTGTGCTTGATGTGTACTGTTGTAGATGtttgtaataaaatataaaaaata

Function

NR:

description
PREDICTED: C-X-C chemokine receptor type 4-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0042119 neutrophil activation biological_process
GO:0006935 chemotaxis biological_process
GO:0070098 chemokine-mediated signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016494 C-X-C chemokine receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817024.1 True 1453 mRNA 0.55 5 13163839 13166831

Neighbor

gene id symbol gene type direction distance location
si:ch211-227n13.3 NA coding upstream 321 13159016 ~ 13163518 (+)
pecr pecr coding upstream 41166 13118569 ~ 13122673 (+)
orc2 LOC102787487 coding upstream 51575 13106699 ~ 13112264 (+)
zgc:162816 LOC103362211,LOC102298354,LOC107097021 coding upstream 58038 13101402 ~ 13105801 (+)
col6a2 col6a2 coding upstream 67423 13081743 ~ 13096416 (+)
mcm6 mcm6,LOC106569474 coding downstream 9994 13176825 ~ 13183207 (+)
LOC120568679 NA coding downstream 46485 13213316 ~ 13223854 (+)
trnae-cuc_17 NA coding downstream 51308 13218139 ~ 13218210 (+)
LOC120568782 pcdh8 coding downstream 107331 13274162 ~ 13278429 (+)
LOC120568688 lect1 coding downstream 112245 13279076 ~ 13286178 (+)
G114008 LOC104953400 non-coding upstream 10245 13152099 ~ 13153594 (+)
G114000 NA non-coding upstream 135669 13027079 ~ 13028170 (+)
G113956 NA non-coding upstream 289529 12861625 ~ 12874310 (+)
G113938 NA non-coding upstream 384441 12778340 ~ 12779398 (+)
G113852 NA non-coding upstream 536320 12626079 ~ 12627519 (+)
G114033 NA non-coding downstream 29430 13196261 ~ 13198734 (+)
G114035 NA non-coding downstream 32937 13199768 ~ 13200746 (+)
G114037 NA non-coding downstream 37994 13204825 ~ 13207023 (+)
LOC120568783 NA non-coding downstream 83920 13250751 ~ 13254585 (+)
G114055 NA non-coding downstream 119819 13286650 ~ 13287219 (+)
ndufb3 ndufb3 other upstream 38376 13123030 ~ 13125463 (+)
rpl37a rpl37a,RPL37A other upstream 46483 13114596 ~ 13117356 (+)
col6a1 col6a1 other upstream 89245 13010575 ~ 13074594 (+)
G113979 LOC104959684 other upstream 188202 12929215 ~ 12975637 (+)
si:ch73-71c20.5 NA other downstream 16453 13183284 ~ 13186364 (+)
LOC120568245 LOC103365337,LOC101481118,LOC102206401,LOC102290843 other downstream 1120319 14287150 ~ 14295993 (+)
rgs18 rgs18,LOC106918816,LOC103139989,LOC103479038 other downstream 1818946 14985777 ~ 14993083 (+)
ro60 trove2 other downstream 1846912 15013743 ~ 15026208 (+)
G114789 NA other downstream 1984965 15151796 ~ 15157199 (+)

Expression


Co-expression Network