LOC120567720


Basic Information

Item Value
gene id LOC120567720
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 26064589 ~ 26086344 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005640605.1
TTCCTTCTTCGTGTGGTATATAAAGCATAGTGGGGAGAGCTGATCAAGACAAACAGAAGTAAGTAAAAAGATGAAGACCTCCGTGGCTGTGTTGACTTTATCCCTCTTCTACCTTAGTGTGGCTGAGGTGCAGCAGCTGGATGACCAAGCAGAACAGGGCTCCAGCATAGAGATTCCCAACGTCGAGCGAACATGTCCCTGTGCTGGTGACATAACAGGGAGCCAGATAAACCATTGGCACCTTTTTGACATCTTAAGAGACCTGGAGGCCAAACTGAAGAACACTGAAAAACAATTAGAGGATCTGAAGAGAGAGGTCTGAGGTAACGGTGTGGCATTTGGAGCATCTATCGGCAATGCTGGAAATATAGGACCTTATAATGTTGAGATCACACTGACCTAGTATAATGTGTTTTCAAACACAGGCGCATACAACCCTGCGACAGGTATTTTCACTGCTCCAGTCAAAGGAATCTATTACTTCAGCTTCTCTGGCCATAATTTATCATCTAGACTAATGGGGCTGCATCTGATGAAGAATGGAGTGCAGATGGTTCATGTGGCCAACCACCCAGCTGGAAACCGCCATGAGACCGCAACCAATGGCATGACTCTACAGCTTGAAGTGGGAGACCAGGTGTACATGAGACTGGTGTCAAACACCTGGATTTTTGATAATGGTAATAACCACAGCACCTTCATTGGTCATTTGTTATTCCCTCTGTAAGGGAAAGAGGAGAGTAGGTTGCTTTTTGACTTGATGAACGTGAGTCTAAATATCCCTTTCGTTTTAACTCTGAAATGGCCTGCAACAATTCTAGAGAAagatatctggctctttagcagcTAGATGCTCTTGACTGTGTTCACCAGCCACTCTGTTATCTTCTCTGTTAGCTGATTGGTGCTAAGCAGATAGCGTATAGTGGCTTTATCAGAGCTTTATTGTTACAAAATGGTCTCCTATACTGTAAGTGTTGATAATAGCAGCTCAGGAAATTTAAAtcaatgtaaatataaaaaataacgcAGGTTAAGAAGAATAC
>XR_005640606.1
GAAAAGTAAACAAGCACACTACAGTTGGGACACCTAGTAGTAGCTTAGTACAGTGGTATTGAAGCATTGGATGGGAAACTAAGGACTAGGCAACATGGTGATTCAGTGTGCATTTacaaattgtaaaaataaaccaaacagaTGGGCACCACAAAGTTTTCCACAAATGTCCATTGCGAGATCCAGAAAGGAGCCAACTGTGACTTCTTGCTGCTGGCTTGGACATCAAGACACCGGCCGAGACTCTACTCAAGTGTCGAACGTGTAGTGATCATTTCAGACCAGACGACTTTGAAAAACCCCCGCAATCTAAAGGACCACAAGTCACTGACAACGAATCCGGTTCCATCCGTCTTTCCAGATGCACCAACAGCTACTGATGAACAGTGTGGCTGAGGTGCAGCAGCTGGATGACCAAGCAGAACAGGGCTCCAGCATAGAGATTCCCAACGTCGAGCGAACATGTCCCTGTGCTGGTGACATAACAGGGAGCCAGATAAACCATTGGCACCTTTTTGACATCTTAAGAGACCTGGAGGCCAAACTGAAGAACACTGAAAAACAATTAGAGGATCTGAAGAGAGAGGTCTGAGGTAACGGTGTGGCATTTGGAGCATCTATCGGCAATGCTGGAAATATAGGACCTTATAATGTTGAGATCACACTGACCTAGTATAATGTGTTTTCAAACACAGGCGCATACAACCCTGCGACAGGTATTTTCACTGCTCCAGTCAAAGGAATCTATTACTTCAGCTTCTCTGGCCATAATTTATCATCTAGACTAATGGGGCTGCATCTGATGAAGAATGGAGTGCAGATGGTTCATGTGGCCAACCACCCAGCTGGAAACCGCCATGAGACCGCAACCAATGGCATGACTCTACAGCTTGAAGTGGGAGACCAGGTGTACATGAGACTGGTGTCAAACACCTGGATTTTTGATAATGGTAATAACCACAGCACCTTCATTGGTCATTTGTTATTCCCTCTGTAAGGGAAAGAGGAGAGTAGGTTGCTTTTTGACTTGATGAACGTGAGTCTAAATATCCCTTTCGTTTTAACTCTGAAATGGCCTGCAACAATTCTAGAGAAagatatctggctctttagcagcTAGATGCTCTTGACTGTGTTCACCAGCCACTCTGTTATCTTCTCTGTTAGCTGATTGGTGCTAAGCAGATAGCGTATAGTGGCTTTATCAGAGCTTTATTGTTACAAAATGGTCTCCTATACTGTAAGTGTTGATAATAGCAGCTCAGGAAATTTAAAtcaatgtaaatataaaaaataacgcAGGTTAAGAAGAATAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005640605.1 False 1046 lncRNA 0.43 3 26064589 26065894
XR_005640606.1 True 1316 lncRNA 0.44 4 26064589 26086344

Neighbor

gene id symbol gene type direction distance location
LOC120567824 LOC106676181,LOC105890570,LOC105912786,LOC106632393 coding downstream 6017 26052099 ~ 26058572 (-)
LOC120568966 LOC104919207,LOC103356876,LOC108245539 coding downstream 75642 25972731 ~ 25988947 (-)
LOC120568965 LOC104919208,LOC101171526,LOC104966176,LOC103396005,LOC101079252 coding downstream 96169 25963373 ~ 25968420 (-)
pax3a LOC103356872 coding downstream 146816 25895638 ~ 25917773 (-)
LOC120568225 LOC103359193 coding downstream 928630 25114378 ~ 25135959 (-)
map6d1 NA coding upstream 109499 26195843 ~ 26203560 (-)
mul1a mul1 coding upstream 239144 26325488 ~ 26330262 (-)
vwa5b2 vwa5b2,LOC104957800 coding upstream 248096 26334440 ~ 26348151 (-)
eif4e2 eif4e2,LOC102778094 coding upstream 306545 26392889 ~ 26400884 (-)
capn10 capn10 coding upstream 314638 26400982 ~ 26410408 (-)
G117899 LOC103356880,LOC101482764,LOC104966182,LOC107087304 non-coding downstream 13511 26048930 ~ 26051078 (-)
LOC120568967 NA non-coding downstream 72380 25989412 ~ 25992209 (-)
G117890 acsl3,LOC102195906,LOC108245538,LOC100696941,LOC102792450,LOC103356873 non-coding downstream 126079 25937605 ~ 25938510 (-)
G117875 NA non-coding downstream 192336 25871325 ~ 25872253 (-)
LOC120568899 NA non-coding downstream 234725 25828793 ~ 25829864 (-)
G117957 NA non-coding upstream 11249 26097593 ~ 26102089 (-)
G117993 NA non-coding upstream 106663 26193007 ~ 26194884 (-)
G117994 NA non-coding upstream 124005 26210349 ~ 26210668 (-)
G117995 NA non-coding upstream 125164 26211508 ~ 26211748 (-)
G118002 NA non-coding upstream 222443 26308787 ~ 26309326 (-)
G117732 NA other downstream 1141271 24922203 ~ 24923318 (-)
G117560 NA other downstream 1528093 24499380 ~ 24536496 (-)
LOC120568990 LOC101487892,LOC104941256 other downstream 2207968 23851073 ~ 23856621 (-)
LOC120568062 LOC108239646,LOC104957657,LOC101467149,LOC102793932,LOC103364894 other downstream 2572977 23468620 ~ 23491612 (-)
G117259 vps4b other downstream 2633597 23430366 ~ 23430992 (-)
camk2n1a camk2n2 other upstream 229426 26315770 ~ 26319595 (-)
G118175 NA other upstream 575277 26661621 ~ 26665952 (-)
cirbpa cirbp other upstream 733494 26819838 ~ 26824570 (-)
LOC120568986 epha4,LOC100711706 other upstream 1556983 27643327 ~ 27675360 (-)
G118524 NA other upstream 1627123 27713467 ~ 27718759 (-)

Expression


Co-expression Network