LOC120567786


Basic Information

Item Value
gene id LOC120567786
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 19836814 ~ 19840804 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005640610.1
TTCATGTGCATCTGCgtcacaatattttttatttcattggaAAACAGAATAGGGTGATAGTGCAGCTAGTCTGTCATCTtttattcatccattcatcctcTTCTCCTCACTTCTCACTCCTCGCCTCCGCACCAGGGAGCTTAGCATCTGACAACGTTCACTGAAAACCACCAGCTGGATAGAcaacaagaggagaggaaaagctAGGAAAtaagaaaagtgtgtgtgcgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtacgtaCGTGCATGCAGGAGGGACAGGAGGGCAGCAGGGGCACATTGTGATGACAGCAGCCCGGCCCTCAGAGCACAGCAGATGGTTAAGACAGGAATGGCTGTGGCTCTAGATCAAAACCTCAACTCTCCAAAGTAACAATCTTTGAATAAAATTaactttgtttttcatttttgtaatAAATGCATCTCTGTGCAAAGAGGAAAATACAAAGAAGTTATATTTTCTTCTGGCTCTCCACTACTCTGTGTCACTGAAAGCCTGGCCTGCTGAAATGATGAAGGCCAGTCGTGTCGGATATTTCTGGCCTTTTTCTGTCCCTCACACTCACACCcgcgcgcacaaacacacagagcttcAAGTTGCCATGGCAATCTGACGATAAGGAGTTATGATTGAATGGCTGAGGTAGAAATGTGCTTTGATTGCCACAGTGTGCTGCATAGACATTGATTTTGCCTTTCACCTCACAGACCTGCTGCAGTTATTATCATTTCTGGTGAGCTGAGCTGAAGTAATTTCAGGAAAATACAATTATGCAATGCATATtcatggcactgtgtacatttaaatagctgtgtgaacttgtttttgggtgacAAAAATGTCTTATTCAGCATTGGATGCACTATGCTTaccaagttagctagctagtgctaGCATTTGCTGGTAACccagcgtttagcttagcagtAGCTGCACCCTCTTGtacaaatatggtcacttctgctTCCAAAACAACAAGTTGGCGAAGGCCAAAATGCCAAACTCAAAGCATCCAAACGGTAGTCCACAAACCAAAGGGTGGCGTCCTGTTGTGTCACGGTGGCTACGTCCACTTCTTTTGTACATTCTGTAGTTGTAAATACTCTTTACAGCTTGAGTCTGTATCTGTCAGCCTCAACTGATAGCCCGTATTTATCAGCCTCTATCATCTGTCAATTGCTATAGGTGCTATAGGTAATATTTGTGTGCAGCGTGAATTTCCTTGTGCCATATTTGTGTATTGCCATAGAAGCCGAGGACTCATGGATGTGTTGTTGTGTGCGGTTTTGAGGTAGATAATTTGTCATAATTGTTTAAATCTACATACAGATGGAAATCAAGTTTCCTTTACATTTAAGCATACTCAGAAAAGTTATATACAAAGACCTGTTTTGTTTGATTGTTTAATAGACAAAGGAAAAGAAGGAGTTGCTCACACCtgcaaaatattcaaataaattgTGGATGGTGATGAGACAGCTACAGAAAAATCatagaaaacaaaaaACTCGGTGCCCGTCGCAGGCTGTTAACATTTCATGCTTGTTCGCATCATAAGCTTTGGAGTTGCACGGCATGCATGTCTTCTCTTCAACAATCCaaaacaaacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtttgtgtgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgtgtgtgtgtgtgtgtgggtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtatttgcgtgtATGTAAGGAACTTCTCATGTGTGCTGTGTAATAGTCTAATGGCTTTTGTTTGTGAAATAGGCTGATAAATTATGTAACTGTTTGTTGTAGCTATGTGCCAAATAAACAACTTTTTCCAGCAGCAA

Function

GO: NA

KEGG:

id description
ko04740 Olfactory transduction

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005640610.1 True 1930 lncRNA 0.43 2 19836814 19840804

Neighbor

gene id symbol gene type direction distance location
LOC120567771 NA coding upstream 9842 19802991 ~ 19826972 (+)
neurod6b neurod6,LOC102793566,LOC102311402,LOC101472195 coding upstream 64650 19769289 ~ 19772164 (+)
pde1cb pde1c,LOC108232872,LOC103135697,LOC103479836,LOC102794047,LOC100712431,LOC103361422 coding upstream 85181 19648419 ~ 19751633 (+)
LOC120568742 vim coding upstream 190290 19639508 ~ 19646524 (+)
LOC120568599 LOC107383795 coding upstream 220960 19603644 ~ 19615854 (+)
LOC120567775 adcyap1r1,LOC103396405,LOC102193585,LOC100710985,LOC104917732 coding downstream 14184 19854988 ~ 19882428 (+)
eef1da LOC106532782,LOC101466496,LOC102194655,LOC102290633,LOC103361414 coding downstream 80511 19921315 ~ 19947470 (+)
zgc:113531 LOC104917724,LOC100692768,LOC101464837,LOC104948902,LOC102196942 coding downstream 179544 20020348 ~ 20024640 (+)
kiss1ra gpr54,LOC102788056,LOC101463985,LOC104942405 coding downstream 396000 20236804 ~ 20252137 (+)
LOC120568950 atp5l,LOC108233819 coding downstream 493557 20334361 ~ 20336124 (+)
G116204 NA non-coding upstream 2441 19833123 ~ 19834373 (+)
G116200 NA non-coding upstream 82366 19752493 ~ 19754448 (+)
G116175 NA non-coding upstream 198402 19638170 ~ 19638412 (+)
G116174 NA non-coding upstream 198691 19637878 ~ 19638123 (+)
G116168 NA non-coding upstream 209195 19627254 ~ 19627619 (+)
G116214 NA non-coding downstream 31829 19872633 ~ 19873049 (+)
G116215 NA non-coding downstream 43791 19884595 ~ 19885699 (+)
G116216 NA non-coding downstream 61439 19902243 ~ 19902819 (+)
LOC120567788 NA non-coding downstream 361321 20202125 ~ 20203738 (+)
G116322 NA non-coding downstream 474084 20314888 ~ 20315271 (+)
emilin2a NA other upstream 371433 19447011 ~ 19465381 (+)
LOC120568770 NA other upstream 784572 19017039 ~ 19052242 (+)
LOC120568911 NA other upstream 1111367 18720365 ~ 18725447 (+)
LOC120568691 NA other upstream 1162674 18660429 ~ 18674140 (+)
skila skil,LOC102782637 other upstream 1234551 18566633 ~ 18602263 (+)
LOC120567833 gbg5 other downstream 532423 20373227 ~ 20375633 (+)
LOC120568904 crhr2,LOC101476678,LOC102776588 other downstream 1041813 20882617 ~ 20915322 (+)
LOC120568354 NA other downstream 2030149 21870953 ~ 21897391 (+)
LOC120567968 NA other downstream 2767245 22608049 ~ 22620131 (+)
LOC120568311 LOC103368946,LOC103142996,LOC106925933,LOC104929332 other downstream 2800706 22641510 ~ 22681293 (+)

Expression


Co-expression Network