LOC120567799


Basic Information

Item Value
gene id LOC120567799
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 4074729 ~ 4082082 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005640614.1
GGTCGAGGAGAAACATCCTAAAGTGAGTGCCATCGCTGCACAGTGATCAACAACATACGTGGCTGAAGATGATTTTCACACTTACATCTGCCTGCAGAAGGAGTCCCTCAGGTGTTTCTTTGAAGTGTGCCATGTGTTGGCAACAGCAGCTGACGTTGAACAAACACTACAGCTTCCTGACTCTTCAAGACTAATTGTCTTAggtGAATTGCTCACAGCAAGCTTTTGGATGCTGAGCATCGAGGGTCAGGTGGTTTTGCCTCCACATCCCAACTTCTTGGCTGGAGTGGCAGCTTTGTTTTCTAGCTACTACAACTTCAATCTGGTGTACCAGGAGCAAGCATCTTGCAcactggaattcattcaaagATGCTTTTTGGACTGAACCCCTCCAGTGGGACCAAGACAACAAAGATGGTGAGCCAAAAAAGTGGGAAGGTacaggagaagaagagaaaccCTCACGTTTCCTCTCTACTCAAGCAGATGATGGATTTTGAATGGCTTCAATTGTAAGTCATATACAAACGACTTCCTCACTATTTGAACGGACATTGTTCTAATCttctaatgttttatttttgcctgTTGTCGAGGTTATGTTTTGAACAGTTATGGTAATCCAGGTCCTGATATAAAATTGGGTCTTTAAGCAATGCATATTGTGAATTTTAATATTGCTGGACCTCGTTGCAACTCTTAATTTGAATTCCATTGAATGTTTAATGAGCtg
>XR_005640615.1
GGTCGAGGAGAAACATCCTAAAGTGAGTGCCATCGCTGCACAGTGATCAACAACATACGTGGCTGAAGATGATTTTCACACTTACATCTGCCTGCAGAAGGAGTCCCTCAGGTGTTTCTTTGAAGTGTGCCATTCTTTTAGGTGTTGGCAACAGCAGCTGACGTTGAACAAACACTACAGCTTCCTGACTCTTCAAGACTAATTGTCTTAggtGAATTGCTCACAGCAAGCTTTTGGATGCTGAGCATCGAGGGTCAGGTGGTTTTGCCTCCACATCCCAACTTCTTGGCTGGAGTGGCAGCTTTGTTTTCTAGCTACTACAACTTCAATCTGGTGTACCAGGAGCAAGCATCTTGCAcactggaattcattcaaagATGCTTTTTGGACTGAACCCCTCCAGTGGGACCAAGACAACAAAGATGGTGAGCCAAAAAAGTGGGAAGGTacaggagaagaagagaaaccCTCACGTTTCCTCTCTACTCAAGCAGATGATGGATTTTGAATGGCTTCAATTGTAAGTCATATACAAACGACTTCCTCACTATTTGAACGGACATTGTTCTAATCttctaatgttttatttttgcctgTTGTCGAGGTTATGTTTTGAACAGTTATGGTAATCCAGGTCCTGATATAAAATTGGGTCTTTAAGCAATGCATATTGTGAATTTTAATATTGCTGGACCTCGTTGCAACTCTTAATTTGAATTCCATTGAATGTTTAATGAGCtg
>XR_005640616.1
GGTCGAGGAGAAACATCCTAAAGTGAGTGCCATCGCTGCACAGTGATCAACAACATACGTGGCTGAAGATGATTTTCACACTTACATCTGCCTGCAGAAGGAGTCCCTCAGGTGTTTCTTTGAAGTGTGCCATGTGTTGGCAACAGCAGCTGACGTTGAACAAACACTACAGCTTCCTGACTCTTCAAGACTAATTGTCTTAggtGAATTGCTCACAGCAAGCTTTTGGATGCTGAGCATCGAGGGTCAGGTGGTTTTGCCTCCACATCCCAACTTCTTGGCTGGAGTGGCAGCTTTGTTTTCTAGCTACTACAACTTCAATCTGGTGTACCAGGAGCAAGCATCTTGCAcactggaattcattcaaagATGCTTTTTGGACTGAACCCCTCCAGTGGGACCAAGACAACAAAGATGGTGAGCCAAAAAAGTGGGAAGGTacaggagaagaagagaaaccCTCACGTTTCCTCTCTACTCAAGCAGATGATGGATTTTGAATGGCTTCAATTgtggaggaggtggagatttgagaagcGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005640614.1 False 733 lncRNA 0.42 4 4079579 4082082
XR_005640615.1 True 741 lncRNA 0.42 4 4079579 4082082
XR_005640616.1 False 541 lncRNA 0.47 5 4074729 4082082

Neighbor

gene id symbol gene type direction distance location
cldn15la LOC104937175,LOC107383743,LOC108229378 coding downstream 47143 4021167 ~ 4027586 (-)
saga LOC100700585,LOC102198835,LOC102289605,LOC101471160,LOC103367699,LOC102794384 coding downstream 56467 4001441 ~ 4018262 (-)
proca NA coding downstream 90734 3972332 ~ 3983995 (-)
LOC120568530 NA coding downstream 184813 3883756 ~ 3889916 (-)
LOC120568324 NA coding downstream 202914 3861329 ~ 3871815 (-)
si:ch73-170d6.2 NA coding upstream 28664 4110746 ~ 4121351 (-)
slc39a6 slc39a6 coding upstream 63781 4145863 ~ 4168656 (-)
LOC120567835 LOC106949703,LOC103156008,LOC107087008 coding upstream 405246 4487328 ~ 4499789 (-)
LOC120567837 NA coding upstream 423640 4505722 ~ 4510614 (-)
si:dkey-7l6.3 NA coding upstream 437279 4519361 ~ 4527181 (-)
G112007 NA non-coding downstream 34532 4039884 ~ 4040197 (-)
G111997 NA non-coding downstream 105511 3967994 ~ 3969218 (-)
LOC120568335 NA non-coding downstream 253539 3800195 ~ 3821190 (-)
LOC120568342 NA non-coding downstream 353607 3718266 ~ 3721122 (-)
LOC120568339 NA non-coding downstream 382266 3691144 ~ 3692463 (-)
G112018 LOC102799398 non-coding upstream 8426 4090508 ~ 4138931 (-)
G112019 NA non-coding upstream 10483 4092565 ~ 4140920 (-)
G112009 NA non-coding upstream 18092 4100174 ~ 4100868 (-)
G112012 NA non-coding upstream 25361 4107443 ~ 4128372 (-)
G112048 NA non-coding upstream 205697 4287779 ~ 4288307 (-)
G111942 NA other downstream 37766 3504498 ~ 4036963 (-)
LOC120568325 NA other downstream 441330 3629565 ~ 3633399 (-)
LOC120568522 NA other downstream 489203 3564546 ~ 3585526 (-)
LOC120569104 NA other downstream 618195 3445400 ~ 3456534 (-)
LOC120568520 LOC101465856,LOC102211951,LOC102296991,LOC100703857,LOC103352978,LOC102799200 other downstream 702954 3314646 ~ 3371775 (-)
G112043 NA other upstream 156020 4238102 ~ 4238670 (-)
G112046 NA other upstream 185456 4267538 ~ 4284083 (-)
G112233 NA other upstream 1581922 5664004 ~ 5668687 (-)
LOC120568546 NA other upstream 1641651 5723733 ~ 5746081 (-)
G112328 NA other upstream 1711081 5793163 ~ 5852447 (-)

Expression


Co-expression Network