LOC120568095


Basic Information

Item Value
gene id LOC120568095
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 11878713 ~ 11954877 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005640659.1
ttgacagctgtgattgactctCAATTGGTCGggccagagtgatagagaaagattTCTCTCTGGCTAACCGCCCGATCACAACTGCTCAGACTGTCCATGGATATTTacctttatatactgtctatgatatTAACGAGACTGGCTCCAAAAATACAAGATGGCAGCGCACGTAccgggatattttggcttcactatTGTACAGCAGGAGGAAGTGGAGAGGCGTCATCCATCTTTATGTATTCTcGCTGCAAGGTCAAAAGGACATGCTGTTTtcggacacacacagagccctCTTCACTCATCTTCCAGCCCCCAACAATCACTGCAGCTACCTGGGAAAGcCTTCCGTCCAGGCTAAAACTGCATTTTTCTCCACCCAAAAAGAAGCTTTTCCGAAACGATGATGTAACTCAGACCAATGAGGGCCCATTGCTGTGTGCCACATTGCTAGTAAAGTCAATAAGACAACGTTTAGATGCCTCTAACTTTTTCTGTGACCGTTCACTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005640659.1 True 509 lncRNA 0.46 3 11878713 11954877

Neighbor

gene id symbol gene type direction distance location
rnf220a rnf220,LOC103363915,LOC101079104,LOC103396675,LOC102292039,LOC102777210 coding upstream 4219 11722117 ~ 11874494 (+)
tmem53 tmem53,LOC102777675 coding upstream 338451 11538054 ~ 11540262 (+)
toe1 NA coding upstream 341526 11530838 ~ 11537187 (+)
urod urod coding upstream 502131 11365369 ~ 11376582 (+)
lyn lyn,LOC100711419,LOC102310923,LOC101477890 coding upstream 514017 11346445 ~ 11364696 (+)
klf17 klf2 coding downstream 9101 11963978 ~ 11966608 (+)
slc6a9 slc6a9,LOC102776426 coding downstream 26262 11981139 ~ 12062243 (+)
lrrc24 LOC103370491,LOC104954089,LOC102776146,LOC102302164 coding downstream 120099 12074976 ~ 12089561 (+)
prmt5 prmt5 coding downstream 600809 12555686 ~ 12562978 (+)
slc7a8b slc7a8 coding downstream 611117 12565994 ~ 12581212 (+)
G113681 NA non-coding upstream 156672 11708374 ~ 11722041 (+)
LOC120568871 NA non-coding upstream 184463 11582904 ~ 11694250 (+)
G113682 NA non-coding upstream 294077 11584436 ~ 11584636 (+)
G113621 NA non-coding upstream 299243 11526011 ~ 11579470 (+)
G113620 NA non-coding upstream 353463 11524978 ~ 11525250 (+)
G113697 NA non-coding downstream 409 11955286 ~ 11955546 (+)
G113763 NA non-coding downstream 189691 12144568 ~ 12152157 (+)
G113773 NA non-coding downstream 222982 12177859 ~ 12200219 (+)
G113776 NA non-coding downstream 252849 12207726 ~ 12208026 (+)
G113777 NA non-coding downstream 253227 12208104 ~ 12208318 (+)
pkia pkia,LOC102780447,LOC102205080 other upstream 532488 11332568 ~ 11346225 (+)
LOC120568835 NA other upstream 992235 10885595 ~ 10886478 (+)
G113130 NA other upstream 2876145 8944477 ~ 9002568 (+)
pdca LOC103370803,LOC104933924,LOC101478313,LOC102200750,LOC100699795,LOC102301525 other upstream 2975866 8895927 ~ 8902847 (+)
LOC120568881 mfsd12,LOC104931866 other upstream 3052902 8812897 ~ 8825811 (+)
abhd4 abhd4 other downstream 167792 12122669 ~ 12128022 (+)
LOC120568189 nop9 other downstream 202572 12157449 ~ 12166277 (+)
ap1g2 LOC106903824,LOC103138413,LOC106934762,LOC101486457,LOC103478890,LOC100694377 other downstream 627765 12582642 ~ 12599840 (+)
LOC120568152 LOC104963178 other downstream 946662 12901539 ~ 12907243 (+)
LOC120567760 LOC103360284,LOC108238605,LOC104963178 other downstream 956562 12911439 ~ 12919198 (+)

Expression


Co-expression Network