LOC120568180



Basic Information


Item Value
gene id LOC120568180
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 22025113 ~ 22036950 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>XR_005640667.1
AAAACTTCCTGTATTCTTTCTGGCAGGGAGCGACCACACAGAGCACAACACCGCTCGCACCGGACAATTGTTTACATCGATGCTGCAGAAAGTCAAGAACAATTATAACAGGGGTCTGGCAGAAATCCAGCTGACCCGGAGTGCTATTGGGCTGACCCAGCAAGATACATGGGCTGAGTCGAAGCAGGGTCTCTGCAGACTGGCCTTTAGCTCTTTTTCATTGAAAACAGACTCCCACTGGCCTGCTTTTGGCTTTGCAAATATGTTCCTTTATTTGCTTTGCCCCCCATACTACCACACCacaatactaataataatgacCCTGAATGAAAATCTCCACACTGGACCAATTTACAAACTCGCAAAGGAACATCTCAGTATGAGTTGGGTTATTGAGTTGCAAGAGATGATGTCTGCTGCTGATGCTTTATTATCCTCAGAAAATAATTTCTCAAGGCAATGCTTGTCAGTTCACAATAATAGCATGATGCCACCCACACAAATACAAAGCTAATCTGTCTGTAAGACCGATGCACCTTCCATATTTATTTAAGTGCATTAAACTGGGATGCAGCTACTGTATTGTTTTGAATCCAGCAGCGGCATGTAGGTAGCAGAGCAAAATTCAATCCGTGGCTCTCTCTACTAAGAACACCTGGTGAGGGGACAAGCATCACGCTGAGGGCCTGCGCAGACCCCCACCAGCAAGAGGCTGCAAATCAAAGCATCAGAGGTGTTTCATCTCTTCGCTGGAGTCTCAGTTTTTCATCCGGGGTTAAGACTGAAAGACTGACACTTAAACTTATGGCTCCTCACATCTACAGCCACGAGCAGATCCTCTCGCAGACGCACGAGGGAGAAACCTTGACGAGGCGCATGAGAGGAAAACCAGCACATTTGGGTATGTCTAAAACCTTCAAAGCATTCTCCGTCAGCCAGATCTTTTTAGTGATTCAGCCTATAGCACAGACTAGCACATGGAAAAAGATATCCTATATTTTTTGGCagcatgtgttttttgtgtttctctGGACCTTGAGGTTCATGGAGCCCCCGCAAAATGAAGTGAGAGCTTGCAGCAGCTGCCAGACGGCATGTAATATGGACATACTACCTCCTCTGATGAGGTCGAGAGGAAAGACAAATTTTCAAAAGGAGAACGGAAATAAGAGGATTAGggcttataatgtgtgtgcaaccTCCCACTAAGACAAGTGTGCCTTGTTGCAGAATACCTGTGACTCATGTAAGGGCTGTTTACAATGGATTCATAGACAGTCACAAGACAAAGGAggagcattttgattggttggtGCAGACTGTGTTGGTGGCAGATGTGACACTTAAAAAGCTGAAGGTCATTAACAGtacctttttaatgttttcctGAAGCacatatttttaataataaaaggcACATTCTGAATCCCACTGTCACTGAACCCCTTTACTTATTACTACCTAATTTGTTGTTATTCATTCTAAATTGTAATTAAATGTGCCGCAACACCTCGGCAGCAGATGGGCTCCTAAAGCGCacagaaaataattaaaagggGATTTTAATGACCTTAATAAATAACCTGTGATTGTGAGAAATGATCTAAGAAATGTCGTTTTGAAAGAAGACGTTGTGCATTGTTGGCCTATGTTAGTCACCATGTGCAAAGGATTTACTTGCAATCTAGTGTTTGGAGtactaaagcaaaaaaaaaggattacgTTAACTTGGTCCGAATTTTGAAATTGAAGTAATTAGTAAAGTAAGTGGAACACGTTTATTTGCTCAAAAACACCAGACAGAGTAGCCAAATGTAGTGGAAGCAATGCCAACAAAACACAACTGTTCCCACATTTGCCCTATTATCGTATCCAGGTTATAAAAGGTTTGATTGATGGAGGCGTTGGCAGAGCAGCGAAAATTGCTCTCTTGGCATATTTACATGTGGTATATCACTGCCTACAGAGTGAGTGACTTGGCATTTGTGCCATCCGCAAACATTAATAAgacataaataaatagaatGAGGGAAAGGTGATTATGTATGTCTGTTGGGATTTTGGAGCAGGATGCTTCTGACAAAAGAACAGGCTCCCTCGCCAAGCCTCTATCAGCTTCCTAAGTCATATCAGATGTTTGGGCTTTATTGGGACTTGAAATAGTTTTAAGCCTGAGCACCCGCCCTGCTGGATTTATCTCCTGCgaaataaagacacacacaataatgaGTACCACTTAGTGTGATATCTGTTTCTTCtacaaattttttttctttaaatctaAAACTACACCTTGAATTAtgacaggcaggtgaatggtagTTAATGTAACAGGCAATATATCTCTTGACAAGACTAGTATCCttgaaatttattttttacagagcCAGTCTTGTTACAACTGGACTGCTAAAATGTCTTCTTCAATGGATTAAAGAAAAACCTCCATCAAACAATGTACAACACAGCCACTGTGGCTCTGAATAAAAACCTCATTGCCGTGGAACAGTGTAGACGTTTTGCTCAGCCTGTACTGAAAACCTTCGGCAGCAGGGATTAGGAGAGAAGATGGAGCATTTATGTCGTCCACTGCATGTTTCCTAAATTACACTATGCGGGTCATTTCCATAGGGGGGAAAAAGTAGGCCTGCGGCGTATCTAATTTGTCTATAATACCAGCAGAAATAGAGAATCTTCTGCCAAGCAGCATCTCAACTTCTCCCTTTGTTTGACATCCCGTTGCCGGAATTGCAAAACTCTGCCAATCTCCTGCCGATATTCCATGAAATCAgccgaaaaaaacaaaacaagtcatGCACTGGAAAGATTGTTTTATAGATATCCAATGTGTTTTAATTTACAATTCCTGAAGTATTCAGTTGTTTAGTTTTTACTGCAAAAGTATTTCCAAAACACATTAAACATGAattatttttactatttttgTGCTATATTGATAATTGACAATTTACTAAAGTGGGTAAACgtagttttttttagctttttaaatCAACTGGACTAGCCAGTGTTATAATTCATAAAGGTATACTAAATCTGATTATAAACCTGGTCAGCAGTAGAGTGTAAATGGCTGTGGTTGTACAGGtttgaatgtgtaactgtataAAAGTGTACTGGGGacttgcatttattttattagacAACATAAAACTGTATTCACCCTAATTCCAAAC
>XR_005640668.1
AAAACTTCCTGTATTCTTTCTGGCAGGGAGCGACCACACAGAGCACAACACCGCTCGCACCGGACAATTGTTTACATCGATGCTGCAGAAAGTCAAGAACAATTATAACAGGGGTCTGGCAGAAATCCAGCTGACCCGGAGTGCTATTGGGCTGACCCAGCAAGATACATGGGCTGAGTCGAAGCAGGGTCTCTGCAGACTGGCCTTTAGCTCTTTTTCATTGAAAACAGACTCCCACTGGCCTGCTTTTGGCTTTGCAAATATGTTCCTTTATTTGCTTTGCCCCCCATACTACCACACCacaatactaataataatgacCCTGAATGAAAATCTCCACACTGGACCAATTTACAAACTCGCAAAGGAACATCTCAGTATGAGTTGGGTTATTGAGTTGCAAGAGATGATGTCTGCTGCTGATGCTTTATTATCCTCAGAAAATAATTTCTCAAGGCAATGCTTGTCAGTTCACAATAATAGCATGATGCCACCCACACAAATACAAAGCTAATCTGTCTGTAAGACCGATGCACCTTCCATATTTATTTAAGTGCATTAAACTGGGATGCAGCTACTGTATTGTTTTGAATCCAGCAGCGGCATGTAGGTAGCAGAGCAAAATTCAATCCGTGGCTCTCTCTACTAAGAACACCTGGTGAGGGGACAAGCATCACGCTGAGGGCCTGCGCAGACCCCCACCAGCAAGAGGCTGCAAATCAAAGCATCAGAGGTGTTTCATCTCTTCGCTGGAGTCTCAGTTTTTCATCCGGGGTTAAGACTGAAAGACTGACACTTAAACTTATGGCTCCTCACATCTACAGCCACGAGCAGATCCTCTCGCAGACGCACGAGGGAGAAACCTTGACGAGGCGCATGAGAGGAAAACCAGCACATTTGGGTTCATGGAGCCCCCGCAAAATGAAGTGAGAGCTTGCAGCAGCTGCCAGACGGCATGTAATATGGACATACTACCTCCTCTGATGAGGTCGAGAGGAAAGACAAATTTTCAAAAGGAGAACGGAAATAAGAGGATTAGggcttataatgtgtgtgcaaccTCCCACTAAGACAAGTGTGCCTTGTTGCAGAATACCTGTGACTCATGTAAGGGCTGTTTACAATGGATTCATAGACAGTCACAAGACAAAGGAggagcattttgattggttggtGCAGACTGTGTTGGTGGCAGATGTGACACTTAAAAAGCTGAAGGTCATTAACAGtacctttttaatgttttcctGAAGCacatatttttaataataaaaggcACATTCTGAATCCCACTGTCACTGAACCCCTTTACTTATTACTACCTAATTTGTTGTTATTCATTCTAAATTGTAATTAAATGTGCCGCAACACCTCGGCAGCAGATGGGCTCCTAAAGCGCacagaaaataattaaaagggGATTTTAATGACCTTAATAAATAACCTGTGATTGTGAGAAATGATCTAAGAAATGTCGTTTTGAAAGAAGACGTTGTGCATTGTTGGCCTATGTTAGTCACCATGTGCAAAGGATTTACTTGCAATCTAGTGTTTGGAGtactaaagcaaaaaaaaaggattacgTTAACTTGGTCCGAATTTTGAAATTGAAGTAATTAGTAAAGTAAGTGGAACACGTTTATTTGCTCAAAAACACCAGACAGAGTAGCCAAATGTAGTGGAAGCAATGCCAACAAAACACAACTGTTCCCACATTTGCCCTATTATCGTATCCAGGTTATAAAAGGTTTGATTGATGGAGGCGTTGGCAGAGCAGCGAAAATTGCTCTCTTGGCATATTTACATGTGGTATATCACTGCCTACAGAGTGAGTGACTTGGCATTTGTGCCATCCGCAAACATTAATAAgacataaataaatagaatGAGGGAAAGGTGATTATGTATGTCTGTTGGGATTTTGGAGCAGGATGCTTCTGACAAAAGAACAGGCTCCCTCGCCAAGCCTCTATCAGCTTCCTAAGTCATATCAGATGTTTGGGCTTTATTGGGACTTGAAATAGTTTTAAGCCTGAGCACCCGCCCTGCTGGATTTATCTCCTGCgaaataaagacacacacaataatgaGTACCACTTAGTGTGATATCTGTTTCTTCtacaaattttttttctttaaatctaAAACTACACCTTGAATTAtgacaggcaggtgaatggtagTTAATGTAACAGGCAATATATCTCTTGACAAGACTAGTATCCttgaaatttattttttacagagcCAGTCTTGTTACAACTGGACTGCTAAAATGTCTTCTTCAATGGATTAAAGAAAAACCTCCATCAAACAATGTACAACACAGCCACTGTGGCTCTGAATAAAAACCTCATTGCCGTGGAACAGTGTAGACGTTTTGCTCAGCCTGTACTGAAAACCTTCGGCAGCAGGGATTAGGAGAGAAGATGGAGCATTTATGTCGTCCACTGCATGTTTCCTAAATTACACTATGCGGGTCATTTCCATAGGGGGGAAAAAGTAGGCCTGCGGCGTATCTAATTTGTCTATAATACCAGCAGAAATAGAGAATCTTCTGCCAAGCAGCATCTCAACTTCTCCCTTTGTTTGACATCCCGTTGCCGGAATTGCAAAACTCTGCCAATCTCCTGCCGATATTCCATGAAATCAgccgaaaaaaacaaaacaagtcatGCACTGGAAAGATTGTTTTATAGATATCCAATGTGTTTTAATTTACAATTCCTGAAGTATTCAGTTGTTTAGTTTTTACTGCAAAAGTATTTCCAAAACACATTAAACATGAattatttttactatttttgTGCTATATTGATAATTGACAATTTACTAAAGTGGGTAAACgtagttttttttagctttttaaatCAACTGGACTAGCCAGTGTTATAATTCATAAAGGTATACTAAATCTGATTATAAACCTGGTCAGCAGTAGAGTGTAAATGGCTGTGGTTGTACAGGtttgaatgtgtaactgtataAAAGTGTACTGGGGacttgcatttattttattagacAACATAAAACTGTATTCACCCTAATTCCAAAC
>XR_005640669.1
AAAACTTCCTGTATTCTTTCTGGCAGGGAGCGACCACACAGAGCACAACACCGCTCGCACCGGACAATTGTTTACATCGATGCTGCAGAAAGTCAAGAACAATTATAACAGGGGTCTGGCAGAAATCCAGCTGACCCGGAGTGCTATTGGGCTGACCCAGCAAGATACATGGGCTGAGTCGAAGCAGGGTCTCTGCAGACTGGCCTTTAGCTCTTTTTCATTGAAAACAGACTCCCACTGGCCTGCTTTTGGCTTTGCAAATATGTTCCTTTATTTGCTTTGCCCCCCATACTACCACACCacaatactaataataatgacCCTGAATGAAAATCTCCACACTGGACCAATTTACAAACTCGCAAAGGAACATCTCAGTATGAGTTGGGTTATTGAGTTGCAAGAGATGATGTCTGCTGCTGATGCTTTATTATCCTCAGAAAATAATTTCTCAAGGCAATGCTTGTCAGTTCACAATAATAGCATGATGCCACCCACACAAATACAAAGCTAATCTGTCTGTAAGACCGATGCACCTTCCATATTTATTTAAGTGCATTAAACTGGGATGCAGCTACTGTATTGTTTTGAATCCAGCAGCGGCATGTAGGTAGCAGAGCAAAATTCAATCCGTGGCTCTCTCTACTAAGAACACCTGGTGAGGGGACAAGCATCACGCTGAGGGCCTGCGCAGACCCCCACCAGCAAGAGGCTGCAAATCAAAGCATCAGAGGTGTTTCATCTCTTCGCTGGAGTCTCAGTTTTTCATCCGGGGTTAAGACTGAAAGACTGACACTTAAACTTATGGCTCCTCACATCTACAGCCACGAGCAGATCCTCTCGCAGACGCACGAGGGAGAAACCTTGACGAGGCGCATGAGAGGAAAACCAGCACATTTGGTTGTTGTAATGCCTAAGAACAAATACAAGAAACCTTGGACTCCATGGAAATCCCGTTAATTGGCAACAATAAAGAGAAAGACGTTTTCTTCTCAGGAggggaaataataataataataaaaaaaacactcattCTTCTGAATGGTCAGAAATGAACAGTCATGCTGATTCAATTTAACACTGCTACAGGAGTGTAAAAATATTACTCAATAAGTACAGTGCAGTGTTAAGCCTGAATTTGTGTTTAAGAAATACGATCACTGCTGCTACTGATGCTATCACTGTTTCTGTCCTGTGAGTGCAAAGGGACAATAAACCTTGGCAAAGGTTTCTCAAATTGCAGTCGAGGCAAACTGCGCTAAGAAGCGTTTACCATTCAGGTGATGGTCAGAGGTTTGGATGTGCTTGACTATTTCAAATTGATTACAGGGTGATGGGTATCCATTAGACCTAAATTCAGGAACGCTTTCACAAGTGAGATCTGagattttatacttttttttcataaaggcTACAGTCAGACTGCTCCCTTTGCTCAGGGTTACGAGCTGCTTCTCTACTTATGTTCAAAGTTAGGCACAGAGCACAGATCATACgtaacacacactgacagggaAGCCAAAATACTATCAGGCTTTTGAGTTTTGTAATTTTCTAGGGACGTTATACATCTAATTGTCTGTTCTTTGATTATCAGTGATGGTGCATATTTCTGCTGTAACCTCCTTTTAGCCACAGATGAAGGTTAACCTCTGCTTGAtgagaaagaaaataagaagACGGTACATTTTTTCTTCTGTGCCTGCTTCCTTTGTGTCCTAGTTAATATGTCTATTatagataaaaataaaaccttccAAAAATAGACAAAATAACCTTTTGTTCTAACAggtaaaacagttaaacactT

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XR_005640667.1 True 3194 lncRNA 0.40 3 22025113 22035741
XR_005640668.1 False 3055 lncRNA 0.41 4 22025113 22035741
XR_005640669.1 False 1810 lncRNA 0.42 4 22025113 22036950

Neighbor


gene id symbol gene type direction distance location
znf830 znf830 coding upstream 7806 22015922 ~ 22017307 (+)
LOC120568175 LOC104935914,LOC104955993,LOC103364110,LOC100699175,LOC102214823 coding upstream 22249 21995600 ~ 22002864 (+)
LOC120568173 LOC103396305,LOC101065160,LOC103364109,LOC100698908,LOC104955975 coding upstream 37631 21983014 ~ 21987482 (+)
cacna1eb NA coding upstream 43067 21921651 ~ 21982046 (+)
klhl14 klhl14,LOC102797134 coding upstream 108216 21899568 ~ 21916897 (+)
LOC120568357 LOC103364114 coding downstream 29064 22066014 ~ 22151613 (+)
prkacbb LOC102779523,LOC103396312,LOC107383895,LOC108239664,LOC105935432,LOC104931534,LOC100699977,LOC101066292 coding downstream 152217 22189167 ~ 22200648 (+)
exosc4 exosc4 coding downstream 164602 22201552 ~ 22204193 (+)
gpaa1 NA coding downstream 167545 22204495 ~ 22210738 (+)
LOC120568851 NA coding downstream 183758 22220708 ~ 22226126 (+)
G116857 NA non-coding upstream 4835 21935519 ~ 22020278 (+)
G116794 mapre2 non-coding upstream 186361 21834466 ~ 21838752 (+)
G116746 NA non-coding upstream 362643 21614100 ~ 21662470 (+)
G116723 NA non-coding upstream 524719 21454330 ~ 21500394 (+)
G116657 NA non-coding upstream 698850 21270751 ~ 21326263 (+)
LOC120568856 NA non-coding downstream 197869 22234819 ~ 22238505 (+)
LOC120568744 NA non-coding downstream 270817 22307767 ~ 22314947 (+)
G116978 NA non-coding downstream 428385 22465335 ~ 22472840 (+)
G117077 NA non-coding downstream 710170 22747120 ~ 22747732 (+)
G117082 dsp non-coding downstream 715302 22752252 ~ 22754490 (+)
LOC120568354 NA other upstream 127722 21870953 ~ 21897391 (+)
LOC120568904 crhr2,LOC101476678,LOC102776588 other upstream 1109791 20882617 ~ 20915322 (+)
LOC120567833 gbg5 other upstream 1649480 20373227 ~ 20375633 (+)
emilin2a NA other upstream 2559732 19447011 ~ 19465381 (+)
LOC120568770 NA other upstream 2972871 19017039 ~ 19052242 (+)
LOC120567968 NA other downstream 571099 22608049 ~ 22620131 (+)
LOC120568311 LOC103368946,LOC103142996,LOC106925933,LOC104929332 other downstream 604560 22641510 ~ 22681293 (+)
kdsr kdsr,LOC102792240 other downstream 1396675 23433625 ~ 23440843 (+)
LOC120567964 dpp6,LOC100710983 other downstream 1555782 23592732 ~ 23685804 (+)
G117319 LOC101487892,LOC104941256 other downstream 1813929 23850879 ~ 23855157 (+)

Expression



Co-expression Network