LOC120568206


Basic Information

Item Value
gene id LOC120568206
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 1177298 ~ 1178632 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005640680.1
gttatatacattataccaCACCAGGTACTCTCTCGCAGTAgttatatacattataccaCACCAGGTACTCTCTCGCAGTAgttatatacattataccaCACCAGGTACTCTCTCGCAGTAgttatatacattataccaCACCAGGTACTCTCTCGCAGTAgttatatacattataccacaccaggtactctcttgcagtagttatatatattataccacACCAGGTACTCTCTAGCAGTAgttatatacattataccacaccaggtactctcttgcagtagttatatatattataccacACCAGGTACTCTCTCGCAGTAgttatatacattataccaCACCAGGTACTCTCTCGCAGTAgttatatacattataccaCACCAGGTACTCTCTCGCATTAgttatatacattataccaCACCAAGTACTCTCTCGCAgtagttatatatattataccacACCAGGTACTCTCTCGCAGTAgttatatacattataccacaccagGTACTCTCTCGCAGTAgttatatacattataccaCACCAGGTACTCTCTTGCAGTAgttatatacattataccacaccaggtactctcttgcagtagttatatatattataccacaccaggtactctcttgcagtagttatatatatattataccacACCAGGTACTCTCTAGCAGTAgttatatacattataccacaccaggtactctcttgcagtagttatatatattataccacACCAGGTACTCTCTCGCAGTAgttatatacattataccacaccaggtactctcttgcagtagttatatatattataccacaccaggtactctcttgcagtagttatatatattataccacaccaggtactctcttgcagtagttatatatattataccacACCAGGTACTCTCTCGCAGTAgttatatacattataccacaccaggtactctcttgcagtagttatatatatta
>XR_005640681.1
tatacattataccaCACCAGGTACTCTCTCGCAGTAgttatatacattataccaCACCAGGTACTCTCTCGCAGTAgttatatacattataccaCACCAGGTACTCTCTCGCAGTAgttatatacattataccaCACCAGGTACTCTCTCGCAGTAgttatatacattataccacaccaggtactctcttgcagtagttatatatattataccacACCAGGTACTCTCTAGCAGTAgttatatacattataccacaccaggtactctcttgcagtagttatatatattataccacACCAGGTACTCTCTCGCAGTAgttatatacattataccaCACCAGGTACTCTCTCGCAGTAgttatatacattataccaCACCAGGTACTCTCTCGCATTAgttatatacattataccaCACCAAGTACTCTCTCGCAgtagttatatatattataccacACCAGGTACTCTCTCGCAGTAgttatatacattataccacaccagGTACTCTCTCGCAGTAgttatatacattataccaCACCAGGTACTCTCTTGCAGTAgttatatacattataccacaccaggtactctcttgcagtagttatatatattataccacaccaggtactctcttgcagtagttatatatatattataccacACCAGGTACTCTCTAGCAGTAgttatatacattataccacaccaggtactctcttgcagtagttatatatattataccacACCAGGTACTCTCTCGCAGTAgttatatacattataccacaccaggtactctcttgcagtagttatatatattataccacaccaggtactctcttgcagtagttatatatattataccacaccaggtactctcttgcagtagttatatatattataccacACCAGGTACTCTCTCGCAGTAgttatatacattataccacaccaggtactctcttgcagtagttatatatatta
>XR_005640682.1
gttatatacattataccaCACCAGGTACTCTCTCGCAGTAgttatatacattataccaCACCAGGTACTCTCTCGCAGTAgttatatacattataccaCACCAGGTACTCTCTCGCAGTAgttatatacattataccaCACCAGGTACTCTCTCGCAGTAgttatatacattataccacaccaggtactctcttgcagtagttatatatattataccacACCAGGTACTCTCTAGCAGTAgttatatacattataccacaccaggtactctcttgcagtagttatatatattataccacACCAGGTACTCTCTCGCAGTAgttatatacattataccaCACCAGGTACTCTCTCGCAGTAgttatatacattataccaCACCAGGTACTCTCTCGCATTAgttatatacattataccaCACCAAGTACTCTCTCGCAgtagttatatatattataccacACCAGGTACTCTCTCGCAGTAgttatatacattataccacaccaggtactctctcgcagtagttatatatattataccacACCAGGTACTCTCTCGCAGTAgttatatacattataccaCACCAGGTACTCTCTTGCAGTAgttatatacattataccacaccaggtactctcttgcagtagttatatatattataccacaccaggtactctcttgcagtagttatatatatattataccacACCAGGTACTCTCTAGCAGTAgttatatacattataccacaccaggtactctcttgcagtagttatatatattataccacACCAGGTACTCTCTCGCAGTAgttatatacattataccacaccaggtactctcttgcagtagttatatatattataccacaccaggtactctcttgcagtagttatatatattataccacaccaggtactctcttgcagtagttatatatattataccacACCAGGTACTCTCTCGCAGTAgttatatacattataccacaccaggtactctcttgcagtagttatatatatta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005640680.1 False 975 lncRNA 0.37 3 1177298 1178632
XR_005640681.1 False 971 lncRNA 0.37 3 1177459 1178632
XR_005640682.1 True 1015 lncRNA 0.37 3 1177298 1178632

Neighbor

gene id symbol gene type direction distance location
LOC120568483 NA coding upstream 113899 1040826 ~ 1063399 (+)
LOC120567933 LOC106676760 coding upstream 137990 1035370 ~ 1039308 (+)
LOC120567938 NA coding upstream 150474 1023627 ~ 1026824 (+)
LOC120567936 NA coding upstream 179083 993359 ~ 998215 (+)
LOC120567931 NA coding upstream 242118 917128 ~ 935180 (+)
si:ch1073-184j22.2 LOC101068556,LOC108228226,LOC105923021 coding downstream 29536 1208168 ~ 1214476 (+)
pex5lb LOC102798103,LOC101487249 coding downstream 47418 1226050 ~ 1287799 (+)
LOC120567879 NA coding downstream 265531 1444163 ~ 1444665 (+)
LOC120567883 NA coding downstream 271757 1450389 ~ 1459918 (+)
LOC120567882 NA coding downstream 285470 1464102 ~ 1464596 (+)
G111012 NA non-coding upstream 116551 1060314 ~ 1060747 (+)
G111041 NA non-coding upstream 126936 1049919 ~ 1050362 (+)
G111040 NA non-coding upstream 133136 1043518 ~ 1044162 (+)
G111034 NA non-coding upstream 144922 1031000 ~ 1032376 (+)
G111030 NA non-coding upstream 152796 1024074 ~ 1024502 (+)
LOC120568205 NA non-coding downstream 4961 1183593 ~ 1185428 (+)
G111060 NA non-coding downstream 27157 1205789 ~ 1206506 (+)
G111074 NA non-coding downstream 52177 1230809 ~ 1231575 (+)
G111092 NA non-coding downstream 205308 1383940 ~ 1384169 (+)
G111093 NA non-coding downstream 206572 1385204 ~ 1385497 (+)
cdyl cdyl other upstream 84535 1020863 ~ 1092763 (+)
si:dkey-154p10.3 NA other upstream 174744 982515 ~ 1002554 (+)
dnajc1 dnajc1,LOC106533614 other upstream 420800 737805 ~ 756498 (+)
G110789 NA other upstream 561302 612113 ~ 615996 (+)
G110768 NA other upstream 652147 523450 ~ 525151 (+)
G111076 NA other downstream 64017 1242649 ~ 1336191 (+)
si:ch1073-184j22.1 LOC103374727,LOC102078966,LOC107100356,LOC101466520,LOC102199261 other downstream 143582 1322214 ~ 1342351 (+)
G111106 NA other downstream 262021 1440653 ~ 1441147 (+)
LOC120568494 NA other downstream 273242 1451874 ~ 1683286 (+)
G111112 NA other downstream 325977 1504609 ~ 1505015 (+)

Expression


Co-expression Network