Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC120568228 |
| gene name | NA |
| gene type | non-coding |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053122.1 |
| NCBI id | CM020919.1 |
| chromosome length | 39550354 |
| location | 25125831 ~ 25130929 (+) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| id | name | namespace |
|---|---|---|
| GO:0043292 | contractile fiber | cellular_component |
| GO:0044449 | obsolete contractile fiber part | cellular_component |
| GO:0036379 | myofilament | cellular_component |
| GO:0005861 | troponin complex | cellular_component |
| GO:0005865 | striated muscle thin filament | cellular_component |
| GO:0030016 | myofibril | cellular_component |
| GO:0030017 | sarcomere | cellular_component |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005640686.1 | True | 681 | lncRNA | 0.47 | 3 | 25125831 | 25130929 |
25,123,000
25,124,000
25,125,000
25,126,000
25,127,000
25,128,000
25,129,000
25,130,000
25,131,000
25,132,000
25,133,000
25,134,000
25,135,000
25,136,000
25,137,000
NC_053122.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC120568127 | NA | coding | upstream | 12029 | 25085974 ~ 25113802 (+) |
| extl2 | extl2 | coding | upstream | 129629 | 24992144 ~ 24996202 (+) |
| rc3h1b | rc3h1 | coding | upstream | 144951 | 24965665 ~ 24980880 (+) |
| LOC120568131 | otol1,LOC104951468 | coding | upstream | 185952 | 24936959 ~ 24939879 (+) |
| LOC120568308 | NA | coding | upstream | 214496 | 24907837 ~ 24911335 (+) |
| gpc5c | LOC103359185,LOC104919215 | coding | downstream | 9808 | 25140737 ~ 25262341 (+) |
| LOC120568394 | LOC103359187 | coding | downstream | 150375 | 25281304 ~ 25353783 (+) |
| LOC120568352 | ephb1,LOC103359190,LOC105935923,LOC107384019,LOC106599529,LOC106907045 | coding | downstream | 245256 | 25376185 ~ 25557632 (+) |
| LOC120568896 | NA | coding | downstream | 677092 | 25808021 ~ 25811280 (+) |
| acsl3b | LOC103356873,LOC102195906 | coding | downstream | 800612 | 25931541 ~ 25944450 (+) |
| G117704 | NA | non-coding | upstream | 7329 | 25118231 ~ 25118502 (+) |
| G117632 | NA | non-coding | upstream | 287602 | 24837956 ~ 24838229 (+) |
| G117547 | NA | non-coding | upstream | 569174 | 24556419 ~ 24556657 (+) |
| LOC120568139 | NA | non-coding | upstream | 786575 | 24337693 ~ 24339256 (+) |
| G117523 | NA | non-coding | upstream | 867000 | 24257554 ~ 24258831 (+) |
| LOC120568901 | NA | non-coding | downstream | 651246 | 25782175 ~ 25793191 (+) |
| LOC120568900 | NA | non-coding | downstream | 741400 | 25872329 ~ 25873402 (+) |
| LOC120568898 | NA | non-coding | downstream | 749575 | 25880504 ~ 25888841 (+) |
| G117845 | LOC103356872,LOC107087289 | non-coding | downstream | 773984 | 25904913 ~ 25905131 (+) |
| G117846 | NA | non-coding | downstream | 775186 | 25906115 ~ 25906316 (+) |
| fgf12a | fgf12,LOC100711708,LOC108245531,LOC107083782,LOC107384013,LOC103396031,LOC103365152,LOC103148287,LOC101467833,LOC106535044,LOC102236041,LOC105935916 | other | upstream | 81774 | 24987499 ~ 25044057 (+) |
| G117664 | NA | other | upstream | 171584 | 24950568 ~ 24954247 (+) |
| selenot1a | selenot,LOC103365166 | other | upstream | 255744 | 24862996 ~ 24870087 (+) |
| LOC120569045 | cacybp | other | upstream | 450077 | 24667879 ~ 24675754 (+) |
| LOC120568789 | kiaa0040,LOC102782613 | other | upstream | 547519 | 24569528 ~ 24578312 (+) |
| LOC120568894 | LOC102789372,LOC104966552 | other | downstream | 612398 | 25743327 ~ 25773468 (+) |
| LOC120568895 | NA | other | downstream | 642848 | 25773777 ~ 25793954 (+) |
| G117829 | NA | other | downstream | 698835 | 25829764 ~ 25830695 (+) |
| LOC120567655 | LOC103356880,LOC101482764,LOC104966182,LOC107087304 | other | downstream | 917860 | 26048789 ~ 26051099 (+) |
| LOC120568800 | NA | other | downstream | 1083503 | 26214432 ~ 26217041 (+) |
