LOC120568747


Basic Information

Item Value
gene id LOC120568747
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 20580520 ~ 20585677 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005640772.1
GCAGCCTGGTTAATGATGACGTATTTACGGCACCTTGctgaataacaaaaacaaactgtcacCTCGTACGCTTCTGTCAGCGGTGCTTGTTGGAGGATGCGACGGCGGGCAAAAAGACGCTATAAAACCGGATAATAGAAAGCGTAAAAACGGCGCTGAAAAGGCGACAATTAAAAAAGGAAAGCTCTAGAAAGTGACGTGGCCAGATGTGCTAAACTGAGCAACTTTTTCATTAAAACCAGTCAGAGTGaaacgccaaatgaagacgATGAGACCGCAGCAGCTAATTGTCCAGTTGGCTGCTAACAGTGAAAATGAAGAGCCAGTACCAAGCACCCGCCGTGAGCTCAGGACTCCAGAGTGGGCAGGGCTCAAGATAGCAGCATAGCCACACAGTGATGACCAGGGAGGAATTGCAGGATGCAGCAGCCTGACAGAAGAGCCCAGTTACCCTCCTCTCCTGCCTGCTGATTGGGCGTCTCTCCGCTGAGACCTCTTACGAACGCTCCTGATAACCAAATGAGCATCTAAAGTAAATAACAGGCTGACACACGGCAGGCTCCCAAACAGAACATACAGCTGCTCATTAAAATCTCCCCAGCCGTTGCCATACATTTGATACAGGTTGTAGCGAGAGTCTCCCCACTGGTTACAGGTTACACTTGTGCACACTCACGGTTTTCCTGTGCAATGAGGGATGATTAGCATCATTTTAGGCACGCACACTTTTTACCACCTTATTAGTTTAACCTTCTACAAGCTTGTTTTCACCCTGTATGATTGTCTGACTGGTCATTCCAAGATGTCAGCAAATACTTTTAACTGATGGCCGGATCGACAAAAATATAACCCAAGTTGTAGTTTTCCTTTCAAAAACATCCCCTGTAGCATAGACTGTATTAAGTCTTATGTGAACCCATTGACTGAGCACAACAACAGAGCTGCTTCCTCATGCTCCCCTGACCAGGCAGACCCTTTGGCTGAGGCGACCAATTAATTATAGACGTGACTTTAAAACTTCCTGTTTTTCCCTCCTTAATTAAGCCAATCTGCCCTGCTGCTCTAAAGAGAGGAAATACCTCAAAATAGTTCCCAATTTCAGCACATTCAATTATTTTGTGCCCAGTAGCAGATTGCATCGGCCGTGTTAATGTACGGACCAACGATGTTTGATCACAGGGAAATTATGTCTGTCATTTCTTCCTGCTTCGCCCCCGATTAATGTGGGAATTGTGAGGCGAGTTGGTGCCCAACGTGGGCACAGCCCGCGCACGGATTACTAACTACGTGCCCTCAGTCAGGCCCATCCAACATCAATCTCTGCCTGAGATGTTTATTATTACACTCATGCAGTCACTTAttctgaagagagagagaaaaaaatcccTGATTTATGCCTCCACTGTTACCCTTTCCTGTCCTCATTTATGAAAACAAAATTCCAGTGAATTCCTGCAGTATTAACACTAAGCAGTTACGAGGTCAAGCTTTCACTTACACTGCACAATTCAACTGGCCGGGCACAGTCCACTCACAGATATTGTGTTGTTTGCTGCAGCTTCACTGTGGCTTTGTTATGCCACGTAAGCCGAGTAAAGGAGTCTGAACACAAACTTACAAACTGACCTTGACACCAGACACGCTTCATATCTCTCtccgcctttttttttttttttacacttacaCTAAATCTACAGCCAGTGTTCAAGAGCACCAAGGCAACTTGAGTGTTATCATAAATGCACCACACTTGTTCAACACCTGCCAGTGTTTTTCAGTGGTGCCCTTTTCAACTTTGAACTGAAACTCACCTCCAGGCCTCACCCTCTGTGTTTTTCACTGGGAAACAGGAAAAAGGAGGAGAAAGTGAAGACCTACGTGGAATGAAAAACCAGGGCTGGAACATTTTAAAAGGGTACTTAATGTGAAGTGttcctttattattttattagtcATATCAGGTGAATACCATCTATTGTTCTCTGCTGTGGTATCTGTGTGTCAGATGTCAGTGAGGTTGTGGGTGTGTACCATCAGAGAGTATTGTATATTTCATGATACCCCCGTTTTACCTCATTAAATACATATTCGTAATATGGACAGTATATTAGTATTTCAATAGTTTAttttatctgtatttattttgggTAAAGGCTTCTCTGCGACACCTTTTCAATTATGATTTTGAAATAGAGGCCCTGAACTAAATAAGGGCGGGTGACAGAGAAGGTGAATTTTATTTTAGCTTTTTATCTCTTAAgaacatttttatgatgtaccGTATGGTAATGTGGGTAATAAATTACGCACCAGTAACACATACAAGTAAACTCCttataattttacattttaaatgaaaatc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005640772.1 True 2362 lncRNA 0.43 3 20580520 20585677

Neighbor

gene id symbol gene type direction distance location
cables1 cables1 coding downstream 22223 20533111 ~ 20558297 (-)
mmp16b LOC103369336 coding downstream 124642 20438467 ~ 20455878 (-)
pter pter coding downstream 164586 20409135 ~ 20415934 (-)
LOC120567661 NA coding downstream 229289 20348509 ~ 20351231 (-)
ift22 ift22,LOC102787459 coding downstream 241127 20336698 ~ 20339393 (-)
gata6 gata6 coding upstream 3107 20588784 ~ 20595162 (-)
mib1 mib1 coding upstream 34611 20620288 ~ 20675826 (-)
greb1l NA coding upstream 107690 20693367 ~ 20740029 (-)
thoc1 thoc1 coding upstream 207067 20792744 ~ 20799545 (-)
LOC120569019 aqp1,LOC103358082,LOC101079855,LOC104917699 coding upstream 229972 20815649 ~ 20818164 (-)
G116368 LOC101078271 non-coding downstream 188800 20390357 ~ 20391720 (-)
G116366 NA non-coding downstream 192458 20387498 ~ 20388062 (-)
G116328 NA non-coding downstream 254646 20325649 ~ 20325874 (-)
G116292 LOC107655868,LOC106532782,LOC108241678 non-coding downstream 643107 19924212 ~ 19937413 (-)
G116293 NA non-coding downstream 698111 19879905 ~ 19882409 (-)
G116484 rock1 non-coding upstream 182958 20768635 ~ 20771028 (-)
G116499 NA non-coding upstream 220476 20806153 ~ 20806691 (-)
G116508 NA non-coding upstream 241835 20827512 ~ 20827711 (-)
G116525 NA non-coding upstream 333292 20918969 ~ 20919716 (-)
G116580 NA non-coding upstream 472915 21058592 ~ 21061240 (-)
xcr1b.1 NA other downstream 784761 19793342 ~ 19795759 (-)
G116138 NA other downstream 1115140 19464700 ~ 19465380 (-)
G116084 LOC104943419,LOC103361571,LOC101479291 other downstream 1357794 19221791 ~ 19222726 (-)
LOC120568972 LOC104949378,LOC103135673,LOC106524506,LOC103479814,LOC106906961,LOC102205181 other downstream 1645029 18931974 ~ 18935491 (-)
G115941 NA other downstream 1734243 18844905 ~ 18846277 (-)
tmie tmie,LOC102776014 other upstream 399124 20984801 ~ 20995567 (-)
higd1a higd1a other upstream 422371 21008048 ~ 21010576 (-)
G116969 NA other upstream 1676321 22261998 ~ 22268559 (-)
LOC120569135 ttc39c,LOC102790819 other upstream 2760041 23345718 ~ 23361580 (-)
G117259 vps4b other upstream 2844689 23430366 ~ 23430992 (-)

Expression


Co-expression Network