LOC120568801


Basic Information

Item Value
gene id LOC120568801
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 29508648 ~ 29510797 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005640787.1
ttgggtCACCCTACTGTGTGGGCTTGTgtagccagctagctaacgttagcaaacacATTAGCTAAGCTTACTCCTGCTAGCGCGAGTGGGTGGCTGTGTGCTTGTGTAGCCAGCTAgccagctaatgttagcaaacacaTTTGCTCCACTTACTCCTGCTGGCACCCAAGATTTGATAtattttgcgtgtgtgtgatgtgtgttgatCTTTTATTCGTGTAAGTCGAAAATCTATCAGTACTACCCACTAGCTAACTAGCCCCATTCACTCGCTCATTTTGTGTGTCAATACGCAGTATCTGTCTTTTTtggagagctagctagctagatagttACCTAATTTTAACAGAATTTAATCGTTTTTGTCCATTGCTAGGTTCCACTAGAGATAACGACACTACAGGCTGTTTGAAAGACAACACCGACTCAGATGTTGAAGCACAGATTTCCCTGCCTAGCACTCCGAGGCTAATCATGCTTGGAGGCAGCCACGTCCCTTGAATTTGTCCAACGcttttttgTCCAGATAAATCCAGAACGGAGTAAATGTGCTGCTAAATTCCAGACCAGCAAGAGCACGGGAAAGAAGGTTCAACGGAAAAATCAGTCCCTGAATCAACATGTCGCCGCTCTAATCCAGGACTTCATTGAATATGACTGGCAGAATACCTAGAGCAGGCCAGTAAAGAAGACGTCCACTCCACTCAGGCTCCATtttcatacacacagacacacacacacacacacacacacacacacacacacacacacacacacactgatagaTGCTGGGGTGAAGTTATTGTTCTTGTGGTAGGACTTCACTACAACATATGcgcacattctctctctctctctctctctctctctctctctctctatgtctctttctctctctctctctctcacacacacacacacacacacacacacacacacaaaccggtTGGGTTTTGTTTACAAACTACACATTgactctcttacacacactcaTGCGCACACATGTATTTGCCCACATGGATTCTCTATCCCTTCCTCTCTGACTAGCACATCACACATGTACACGCACAGAGacatggacacaaacacacacactactctgtcacacatgcatgttctctctctacctccctcGCACACACTTCTGTCTAACTACAACATGCTCCTCTCTCTCATATCTTTCCGATATGTTGGGTTTTACTGTTGGTTTTTACTAATACTAGTAGAGTATGATACATTGATAGACCATGCTTTTCATATATATGTCTATGTGTCATATCCTGTATATCTGAGAATGTGAACGCTTGGATGAAGTTTTACCGTTTGTTTTTATGAATTCTAATAGTTGAATAAAGTTTTTAAACCTCA
>XR_005640788.1
cggacgccccggacagtagGTTCCACTAGAGATAACGACACTACAGGCTGTTTGAAAGACAACACCGACTCAGATGTTGAAGCACAGATTTCCCTGCCTAGCACTCCGAGGCTAATCATGCTTGGAGGCAGCCACGTCCCTTGAATTTGTCCAACGcttttttgTCCAGATAAATCCAGAACGGAGTAAATGTGCTGCTAAATTCCAGACCAGCAAGAGCACGGGAAAGAAGGTTCAACGGAAAAATCAGTCCCTGAATCAACATGTCGCCGCTCTAATCCAGGACTTCATTGAATATGACTGGCAGAATACCTAGAGCAGGCCAGTAAAGAAGACGTCCACTCCACTCAGGCTCCATtttcatacacacagacacacacacacacacacacacacacacacacacacacacacacacacactgatagaTGCTGGGGTGAAGTTATTGTTCTTGTGGTAGGACTTCACTACAACATATGcgcacattctctctctctctctctctctctctctctctctctctatgtctctttctctctctctctctctcacacacacacacacacacacacacacacacacaaaccggtTGGGTTTTGTTTACAAACTACACATTgactctcttacacacactcaTGCGCACACATGTATTTGCCCACATGGATTCTCTATCCCTTCCTCTCTGACTAGCACATCACACATGTACACGCACAGAGacatggacacaaacacacacactactctgtcacacatgcatgttctctctctacctccctcGCACACACTTCTGTCTAACTACAACATGCTCCTCTCTCTCATATCTTTCCGATATGTTGGGTTTTACTGTTGGTTTTTACTAATACTAGTAGAGTATGATACATTGATAGACCATGCTTTTCATATATATGTCTATGTGTCATATCCTGTATATCTGAGAATGTGAACGCTTGGATGAAGTTTTACCGTTTGTTTTTATGAATTCTAATAGTTGAATAAAGTTTTTAAACCTCA
>XR_005640789.1
ttgggtCACCCTACTGTGTGGGCTTGTgtagccagctagctaacgttagcaaacacATTAGCTAAGCTTACTCCTGCTAGCGCGAGTGGGTGGCTGTGTGCTTGTGTAGCCAGCTAgccagctaatgttagcaaacacaTTTGCTCCACTTACTCCTGCTGGCACCCAAGATTTGATAtattttgcgtgtgtgtgatgtgtgttgatCTTTTATTCGTGTTCCACTAGAGATAACGACACTACAGGCTGTTTGAAAGACAACACCGACTCAGATGTTGAAGCACAGATTTCCCTGCCTAGCACTCCGAGGCTAATCATGCTTGGAGGCAGCCACGTCCCTTGAATTTGTCCAACGcttttttgTCCAGATAAATCCAGAACGGAGTAAATGTGCTGCTAAATTCCAGACCAGCAAGAGCACGGGAAAGAAGGTTCAACGGAAAAATCAGTCCCTGAATCAACATGTCGCCGCTCTAATCCAGGACTTCATTGAATATGACTGGCAGAATACCTAGAGCAGGCCAGTAAAGAAGACGTCCACTCCACTCAGGCTCCATtttcatacacacagacacacacacacacacacacacacacacacacacacacacacacacacactgatagaTGCTGGGGTGAAGTTATTGTTCTTGTGGTAGGACTTCACTACAACATATGcgcacattctctctctctctctctctctctctctctctctctctatgtctctttctctctctctctctctcacacacacacacacacacacacacacacacacaaaccggtTGGGTTTTGTTTACAAACTACACATTgactctcttacacacactcaTGCGCACACATGTATTTGCCCACATGGATTCTCTATCCCTTCCTCTCTGACTAGCACATCACACATGTACACGCACAGAGacatggacacaaacacacacactactctgtcacacatgcatgttctctctctacctccctcGCACACACTTCTGTCTAACTACAACATGCTCCTCTCTCTCATATCTTTCCGATATGTTGGGTTTTACTGTTGGTTTTTACTAATACTAGTAGAGTATGATACATTGATAGACCATGCTTTTCATATATATGTCTATGTGTCATATCCTGTATATCTGAGAATGTGAACGCTTGGATGAAGTTTTACCGTTTGTTTTTATGAATTCTAATAGTTGAATAAAGTTTTTAAACCTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005640787.1 True 1368 lncRNA 0.43 4 29508648 29510743
XR_005640788.1 False 1011 lncRNA 0.44 5 29508648 29510797
XR_005640789.1 False 1210 lncRNA 0.44 5 29508648 29510743

Neighbor

gene id symbol gene type direction distance location
LOC120568712 NA coding downstream 216008 29287276 ~ 29292640 (-)
LOC120568834 NA coding downstream 404855 29101010 ~ 29103793 (-)
LOC120568118 LOC104947936,LOC107372586,LOC107373506 coding downstream 632046 28874875 ~ 28876602 (-)
LOC120567913 NA coding downstream 847499 28659832 ~ 28661149 (-)
LOC120567677 NA coding downstream 861115 28637052 ~ 28647533 (-)
si:ch211-153l6.6 LOC102313061,LOC101473329 coding upstream 42662 29553459 ~ 29586063 (-)
LOC120567685 NA coding upstream 174253 29685050 ~ 29690335 (-)
LOC120567690 NA coding upstream 459293 29970090 ~ 29974289 (-)
LOC120568974 LOC101172692,LOC101069094,LOC103362177,LOC106599276 coding upstream 809155 30319952 ~ 30438652 (-)
LOC120568640 sdr16c5 coding upstream 971791 30482588 ~ 30524863 (-)
G118863 NA non-coding downstream 14741 29493304 ~ 29493907 (-)
G118851 NA non-coding downstream 101263 29407085 ~ 29407385 (-)
G118798 NA non-coding downstream 330890 29177482 ~ 29177758 (-)
G118795 NA non-coding downstream 332133 29175934 ~ 29176515 (-)
G118783 NA non-coding downstream 363367 29064681 ~ 29145281 (-)
G118905 NA non-coding upstream 115862 29626659 ~ 29626861 (-)
G118906 NA non-coding upstream 116595 29627392 ~ 29627720 (-)
G118933 NA non-coding upstream 241044 29751841 ~ 29752060 (-)
LOC120567751 NA non-coding upstream 271310 29782107 ~ 29796905 (-)
G118940 NA non-coding upstream 327414 29838211 ~ 29838620 (-)
G118856 NA other downstream 87996 29420379 ~ 29420652 (-)
G118764 NA other downstream 522329 28986091 ~ 28986319 (-)
metap1d metap1d,LOC102783095 other downstream 1355878 28146271 ~ 28152770 (-)
G118524 NA other downstream 1789889 27713467 ~ 27718759 (-)
LOC120568986 epha4,LOC100711706 other downstream 1833288 27643327 ~ 27675360 (-)
LOC120567741 NA other upstream 125306 29636103 ~ 29649792 (-)
LOC120568429 LOC106574020,LOC106613541,LOC103366013 other upstream 930092 30440889 ~ 30477185 (-)
LOC120568929 NA other upstream 1353449 30864246 ~ 30876111 (-)
G119177 NA other upstream 1615633 31126430 ~ 31174951 (-)
G119169 NA other upstream 1659125 31169922 ~ 31171610 (-)

Expression


Co-expression Network