LOC120568871


Basic Information

Item Value
gene id LOC120568871
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 11582904 ~ 11694250 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005640798.1
CTACCGTTGCCAAAGGAAACCAAGGCCCCAGGCCACTAAGCTAGCAGCAATGGAGGAAGGACTTCTGGAACTTCCCTAAGAACCAGCTGCTCAAAATGACTGACTGAGCATATAACTGatgtaagaagaagaagaggacggAGTTAGGACACCTGTGGACAGGAGAGACTTGACACTTCAGCTAGTCTAGATGCAGTTGTCAGATATGACGTTCTTCCTGAAAACGTTGCCACCATGAAGGACAGTGGACTTCAAATACATGGTCTGGGCCACGCTGGCAGGAGTCTAAGAAAGGCAGCGCAGATGTCTTTCTCCCCAGCCATGTCCTCCAGCTCTTTTTGGGCAGATGCCAGATGGGACGTATTTAACCCTATCAGTGTGTCTGTCCTGTGGTCTTCTCCCAGTTGGACAAACTCAGACAACCTCCAAAGGTAAGCTTCCGTGAGGCATCCTGATCAGATGCCTAAACCACATTAACTGGCTCTTTTCAACACGTCAGACCTACGGCCGCTACGGTAATGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005640798.1 True 523 lncRNA 0.50 3 11582904 11694250

Neighbor

gene id symbol gene type direction distance location
tmem53 tmem53,LOC102777675 coding upstream 42642 11538054 ~ 11540262 (+)
toe1 NA coding upstream 45717 11530838 ~ 11537187 (+)
urod urod coding upstream 206322 11365369 ~ 11376582 (+)
lyn lyn,LOC100711419,LOC102310923,LOC101477890 coding upstream 218208 11346445 ~ 11364696 (+)
LOC120567621 LOC103360515,LOC104929875 coding upstream 443020 11128019 ~ 11139884 (+)
rnf220a rnf220,LOC103363915,LOC101079104,LOC103396675,LOC102292039,LOC102777210 coding downstream 27867 11722117 ~ 11874494 (+)
klf17 klf2 coding downstream 269728 11963978 ~ 11966608 (+)
slc6a9 slc6a9,LOC102776426 coding downstream 286889 11981139 ~ 12062243 (+)
lrrc24 LOC103370491,LOC104954089,LOC102776146,LOC102302164 coding downstream 380726 12074976 ~ 12089561 (+)
prmt5 prmt5 coding downstream 861436 12555686 ~ 12562978 (+)
G113621 NA non-coding upstream 3434 11526011 ~ 11579470 (+)
G113620 NA non-coding upstream 57654 11524978 ~ 11525250 (+)
G113619 NA non-coding upstream 58136 11519300 ~ 11524768 (+)
LOC120567863 NA non-coding upstream 527098 11046556 ~ 11055806 (+)
G113498 LOC104957117 non-coding upstream 654661 10926456 ~ 10928243 (+)
G113681 NA non-coding downstream 14124 11708374 ~ 11722041 (+)
G113689 NA non-coding downstream 133153 11827403 ~ 11887669 (+)
LOC120568095 NA non-coding downstream 184463 11878713 ~ 11954877 (+)
G113696 NA non-coding downstream 249649 11943899 ~ 11944356 (+)
G113697 NA non-coding downstream 261036 11955286 ~ 11955546 (+)
pkia pkia,LOC102780447,LOC102205080 other upstream 236679 11332568 ~ 11346225 (+)
LOC120568835 NA other upstream 696426 10885595 ~ 10886478 (+)
G113130 NA other upstream 2580336 8944477 ~ 9002568 (+)
pdca LOC103370803,LOC104933924,LOC101478313,LOC102200750,LOC100699795,LOC102301525 other upstream 2680057 8895927 ~ 8902847 (+)
LOC120568881 mfsd12,LOC104931866 other upstream 2757093 8812897 ~ 8825811 (+)
abhd4 abhd4 other downstream 428419 12122669 ~ 12128022 (+)
LOC120568189 nop9 other downstream 463199 12157449 ~ 12166277 (+)
ap1g2 LOC106903824,LOC103138413,LOC106934762,LOC101486457,LOC103478890,LOC100694377 other downstream 888392 12582642 ~ 12599840 (+)
LOC120568152 LOC104963178 other downstream 1207289 12901539 ~ 12907243 (+)
LOC120567760 LOC103360284,LOC108238605,LOC104963178 other downstream 1217189 12911439 ~ 12919198 (+)

Expression


Co-expression Network