trnag-ucc_9


Basic Information

Item Value
gene id trnag-ucc_9
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 8872434 ~ 8872505 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>unassigned_transcript_538
GCGTTGGTGGTATAGTGGTTAGCATAGCTGCCTTCCAAGCAGTTgacccgggttcgattcccggcCAACGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_538 True 72 tRNA 0.57 1 8872434 8872505

Neighbor

gene id symbol gene type direction distance location
rab36 LOC104931869,LOC103370801 coding downstream 2640 8863071 ~ 8869794 (-)
depdc5 depdc5 coding downstream 10780 8830077 ~ 8861654 (-)
mrpl37 mrpl37,LOC102795257 coding downstream 93093 8765172 ~ 8779341 (-)
LOC120569082 NA coding downstream 108166 8736657 ~ 8764268 (-)
LOC120568830 NA coding downstream 233260 8629489 ~ 8639174 (-)
trnak-cuu_1 NA coding upstream 905 8873410 ~ 8873482 (-)
trnan-guu_6 NA coding upstream 19426 8891931 ~ 8892004 (-)
trnan-guu_8 NA coding upstream 22545 8895050 ~ 8895123 (-)
LOC120568870 LOC104957684 coding upstream 53305 8925810 ~ 8941447 (-)
dusp12 dusp12,LOC102780959 coding upstream 106163 8978668 ~ 8985335 (-)
G113118 NA non-coding downstream 1511 8870700 ~ 8870923 (-)
G113106 NA non-coding downstream 44990 8826367 ~ 8827444 (-)
G112988 NA non-coding downstream 335290 8510833 ~ 8537144 (-)
G112987 NA non-coding downstream 362057 8508598 ~ 8510377 (-)
G112986 NA non-coding downstream 364968 8507228 ~ 8507466 (-)
G113129 NA non-coding upstream 70980 8943485 ~ 8943752 (-)
G113168 NA non-coding upstream 99103 8971608 ~ 8973660 (-)
G113194 NA non-coding upstream 188390 9060895 ~ 9063239 (-)
G113356 NA non-coding upstream 496561 9369066 ~ 9419777 (-)
G113350 NA non-coding upstream 498470 9370975 ~ 9423396 (-)
G113070 NA other downstream 82392 8780452 ~ 8790042 (-)
trnak-uuu_16 NA other downstream 384895 8487467 ~ 8487539 (-)
cdh6 LOC103366829,LOC104926815 other downstream 1708764 7076609 ~ 7163670 (-)
si:ch211-267e7.3 LOC103370300 other downstream 1882312 6956440 ~ 6990122 (-)
zmynd11 zmynd11 other downstream 2135922 6695610 ~ 6736512 (-)
chd7 chd7,LOC103370133,LOC102782711 other upstream 241879 9114384 ~ 9194872 (-)
LOC120568397 NA other upstream 528282 9400787 ~ 9510497 (-)
brinp2 brinp2,LOC103369811 other upstream 1168181 10040686 ~ 10267078 (-)
LOC120567758 NA other upstream 2014502 10887007 ~ 10888952 (-)
G113805 NA other upstream 3345557 12218062 ~ 12218267 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) trnag-ucc_27 NA coding NC_047613.1 CM018559.1 21580884 ~ 21580955 (+)
striped catfish (Pangasianodon hypophthalmus) trnag-ucc_8 NA misc NC_047598.1 CM018544.1 2716030 ~ 2716101 (-)
tiger barb (Puntius tetrazona) trnag-ucc_27 NA coding NW_025047827.1 JAEQBD010000172.1 960407 ~ 960478 (+)
mexican tetra (Astyanax mexicanus) trnag-ucc_8 NA coding NC_035901.1 CM008304.1 24439179 ~ 24439250 (-)