trnar-ucu_13


Basic Information

Item Value
gene id trnar-ucu_13
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 19516853 ~ 19516945 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>unassigned_transcript_559
GGCTCTGTGGCGCAATGGATAGCGCATTGGACTTCTAAttcaaaggttgtgggttcgagtcCCACCAGAGTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_559 True 73 tRNA 0.53 2 19516853 19516945

Neighbor

gene id symbol gene type direction distance location
myl12.2 LOC107098295,LOC102237517,LOC103361564,LOC101069867,LOC103135689,LOC103479826 coding upstream 3391 19510386 ~ 19513462 (+)
adcyap1b prp/pacap,LOC104943411,LOC108232947,LOC103135685 coding upstream 250583 19260195 ~ 19266270 (+)
clul1 LOC103361571 coding upstream 290290 19220205 ~ 19226563 (+)
LOC120568752 NA coding upstream 412412 19067450 ~ 19104441 (+)
LOC120568749 NA coding upstream 502856 18988689 ~ 19013997 (+)
rgs20 rgs20,LOC103361426,LOC100710193,LOC102795665,LOC101473767,LOC107098286,LOC104917737 coding downstream 62172 19579117 ~ 19592564 (+)
LOC120568599 LOC107383795 coding downstream 86699 19603644 ~ 19615854 (+)
LOC120568742 vim coding downstream 122563 19639508 ~ 19646524 (+)
pde1cb pde1c,LOC108232872,LOC103135697,LOC103479836,LOC102794047,LOC100712431,LOC103361422 coding downstream 131474 19648419 ~ 19751633 (+)
neurod6b neurod6,LOC102793566,LOC102311402,LOC101472195 coding downstream 252344 19769289 ~ 19772164 (+)
G116117 NA non-coding upstream 228 19515535 ~ 19516625 (+)
G116115 NA non-coding upstream 8712 19507899 ~ 19508141 (+)
G116114 LOC104962928 non-coding upstream 13020 19503129 ~ 19503833 (+)
G116113 NA non-coding upstream 15555 19500420 ~ 19501298 (+)
G116112 NA non-coding upstream 16778 19499876 ~ 19500075 (+)
G116128 atp6v1h non-coding downstream 37842 19554787 ~ 19568018 (+)
LOC120568776 NA non-coding downstream 102284 19619229 ~ 19624184 (+)
G116168 NA non-coding downstream 110309 19627254 ~ 19627619 (+)
G116174 NA non-coding downstream 120933 19637878 ~ 19638123 (+)
G116175 NA non-coding downstream 121225 19638170 ~ 19638412 (+)
emilin2a NA other upstream 51472 19447011 ~ 19465381 (+)
LOC120568770 NA other upstream 464611 19017039 ~ 19052242 (+)
LOC120568911 NA other upstream 791406 18720365 ~ 18725447 (+)
LOC120568691 NA other upstream 842713 18660429 ~ 18674140 (+)
skila skil,LOC102782637 other upstream 914590 18566633 ~ 18602263 (+)
LOC120567833 gbg5 other downstream 856282 20373227 ~ 20375633 (+)
LOC120568904 crhr2,LOC101476678,LOC102776588 other downstream 1365672 20882617 ~ 20915322 (+)
LOC120568354 NA other downstream 2354008 21870953 ~ 21897391 (+)
LOC120567968 NA other downstream 3091104 22608049 ~ 22620131 (+)
LOC120568311 LOC103368946,LOC103142996,LOC106925933,LOC104929332 other downstream 3124565 22641510 ~ 22681293 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnar-ucu-8 NA coding NC_048583.1 CM023237.2 22704704 ~ 22704795 (+)
striped catfish (Pangasianodon hypophthalmus) trnar-ucu_18 NA coding NC_047620.1 CM018566.1 13328052 ~ 13328143 (-)
tiger barb (Puntius tetrazona) trnar-ucu_73 NA coding NW_025048114.1 JAEQBD010000459.1 1411479 ~ 1411568 (+)
mexican tetra (Astyanax mexicanus) trnar-ucu_18 NA coding NW_019172695.1 APWO02002293.1 4274 ~ 4363 (-)
mexican tetra (Astyanax mexicanus) trnar-ucu_43 NA coding NW_019172899.1 APWO02000093.1 35722 ~ 35813 (+)