trnal-caa


Basic Information

Item Value
gene id trnal-caa
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 36229053 ~ 36229135 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>unassigned_transcript_572
ACCAGgatggccgagtggttaaggcgttGCACTCAAGATGCAATGGACAGTTGTCCTCGTGGGTTCAAGTCCCACTCCTGGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_572 True 83 tRNA 0.54 1 36229053 36229135

Neighbor

gene id symbol gene type direction distance location
LOC120567707 LOC106910133,LOC107834262,LOC106939220,LOC107373952,LOC104944801 coding upstream 785240 35431679 ~ 35443813 (+)
LOC120567912 NA coding upstream 966151 35261558 ~ 35262902 (+)
LOC120569116 LOC107667722 coding upstream 1060337 35165658 ~ 35168716 (+)
LOC120568812 LOC102310619,LOC100692846,LOC108280567,LOC105903927,LOC106524909,LOC108427173 coding upstream 1404232 34809892 ~ 34824821 (+)
trnam-cau_26 NA coding upstream 1452904 34776078 ~ 34776149 (+)
pold3 pold3,LOC107703443 coding downstream 219902 36449037 ~ 36463662 (+)
LOC120567713 LOC107092464,LOC101065262 coding downstream 336626 36565761 ~ 36583870 (+)
LOC120568503 LOC100700741,LOC103361717,LOC101470268 coding downstream 359519 36588654 ~ 36620596 (+)
LOC120568504 LOC103361716 coding downstream 394942 36624077 ~ 36710812 (+)
LOC120568506 NA coding downstream 508013 36737148 ~ 36747668 (+)
trnal-uaa_4 NA non-coding upstream 516 36228455 ~ 36228537 (+)
trnal-uaa_3 NA non-coding upstream 1147 36227824 ~ 36227906 (+)
G120678 NA non-coding upstream 7283 36221419 ~ 36221770 (+)
LOC120568724 LOC107386814 non-coding upstream 22812 36204551 ~ 36206241 (+)
G120675 NA non-coding upstream 40495 36188333 ~ 36188558 (+)
trnal-uaa_5 NA non-coding downstream 5948 36235083 ~ 36235153 (+)
trnal-uaa_6 NA non-coding downstream 8632 36237767 ~ 36237849 (+)
trnal-caa_1 NA non-coding downstream 9084 36238219 ~ 36238301 (+)
trnal-uaa_7 NA non-coding downstream 9419 36238554 ~ 36238636 (+)
trnal-caa_2 NA non-coding downstream 12266 36241401 ~ 36241483 (+)
LOC120568940 NA other upstream 587020 35594878 ~ 35642033 (+)
pde4ca pde4c,LOC101063915,LOC100693394,LOC102791393,LOC102313416 other upstream 1537433 34624276 ~ 34691620 (+)
pik3r2 pik3r2,LOC102792547,LOC100693657 other upstream 1621297 34569394 ~ 34607756 (+)
G120249 rps15,rig,rs15 other upstream 1771442 34453722 ~ 34457611 (+)
rps28 NA other upstream 1825052 34400748 ~ 34404001 (+)
G120716 NA other downstream 176105 36405240 ~ 36405773 (+)
G120717 NA other downstream 176986 36406121 ~ 36406689 (+)
LOC120568208 LOC103361715,LOC100701557,LOC100700197,LOC101469035,LOC102215562,LOC102289753 other downstream 650783 36879918 ~ 37087443 (+)
G120914 LOC103396775 other downstream 1073759 37302894 ~ 37306014 (+)
LOC120568367 LOC103371210,LOC101487706,LOC100534480,LOC102208811,LOC102309261,LOC104937382,LOC106522909 other downstream 1760430 37989565 ~ 38019068 (+)

Expression


Co-expression Network