trnal-caa_1


Basic Information

Item Value
gene id trnal-caa_1
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 36238219 ~ 36238301 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>unassigned_transcript_575
ACCAGGATGGCCGAGTGTTTAAGGCGTTGCACTCAAGATGCAATGGACGTTTGTCCTCGTGGGTTCAAGTCCCACTCCTGGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_575 True 83 tRNA 0.53 1 36238219 36238301

Neighbor

gene id symbol gene type direction distance location
LOC120567707 LOC106910133,LOC107834262,LOC106939220,LOC107373952,LOC104944801 coding upstream 794406 35431679 ~ 35443813 (+)
LOC120567912 NA coding upstream 975317 35261558 ~ 35262902 (+)
LOC120569116 LOC107667722 coding upstream 1069503 35165658 ~ 35168716 (+)
LOC120568812 LOC102310619,LOC100692846,LOC108280567,LOC105903927,LOC106524909,LOC108427173 coding upstream 1413398 34809892 ~ 34824821 (+)
trnam-cau_26 NA coding upstream 1462070 34776078 ~ 34776149 (+)
pold3 pold3,LOC107703443 coding downstream 210736 36449037 ~ 36463662 (+)
LOC120567713 LOC107092464,LOC101065262 coding downstream 327460 36565761 ~ 36583870 (+)
LOC120568503 LOC100700741,LOC103361717,LOC101470268 coding downstream 350353 36588654 ~ 36620596 (+)
LOC120568504 LOC103361716 coding downstream 385776 36624077 ~ 36710812 (+)
LOC120568506 NA coding downstream 498847 36737148 ~ 36747668 (+)
trnal-uaa_6 NA non-coding upstream 370 36237767 ~ 36237849 (+)
trnal-uaa_5 NA non-coding upstream 3066 36235083 ~ 36235153 (+)
trnal-caa NA non-coding upstream 9084 36229053 ~ 36229135 (+)
trnal-uaa_4 NA non-coding upstream 9682 36228455 ~ 36228537 (+)
trnal-uaa_3 NA non-coding upstream 10313 36227824 ~ 36227906 (+)
trnal-uaa_7 NA non-coding downstream 253 36238554 ~ 36238636 (+)
trnal-caa_2 NA non-coding downstream 3100 36241401 ~ 36241483 (+)
trnal-uaa_8 NA non-coding downstream 3435 36241736 ~ 36241818 (+)
trnal-caa_3 NA non-coding downstream 3886 36242187 ~ 36242269 (+)
trnal-uaa_9 NA non-coding downstream 4221 36242522 ~ 36242604 (+)
LOC120568940 NA other upstream 596186 35594878 ~ 35642033 (+)
pde4ca pde4c,LOC101063915,LOC100693394,LOC102791393,LOC102313416 other upstream 1546599 34624276 ~ 34691620 (+)
pik3r2 pik3r2,LOC102792547,LOC100693657 other upstream 1630463 34569394 ~ 34607756 (+)
G120249 rps15,rig,rs15 other upstream 1780608 34453722 ~ 34457611 (+)
rps28 NA other upstream 1834218 34400748 ~ 34404001 (+)
G120716 NA other downstream 166939 36405240 ~ 36405773 (+)
G120717 NA other downstream 167820 36406121 ~ 36406689 (+)
LOC120568208 LOC103361715,LOC100701557,LOC100700197,LOC101469035,LOC102215562,LOC102289753 other downstream 641617 36879918 ~ 37087443 (+)
G120914 LOC103396775 other downstream 1064593 37302894 ~ 37306014 (+)
LOC120568367 LOC103371210,LOC101487706,LOC100534480,LOC102208811,LOC102309261,LOC104937382,LOC106522909 other downstream 1751264 37989565 ~ 38019068 (+)

Expression


Co-expression Network