XLOC_004743 (ndel1a)


Basic Information

Item Value
gene id XLOC_004743
gene name ndel1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 26467847 ~ 26487363 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009390
CGTCACTGAAGCGAGAGAGAGGATGCTGAAACACTGAGGCTGTGCCAGGACCACAGTCAGTCTACTATCAGCGTTCAAGATCCTGGAAATGTGCAGGTTTATCTGTCATGGATGCAAATATGATACCAAAATTCACCACTAAAGAGGAGGAAATTGACTTCTGGAAGGCTCTTTCACTCAAGTACAAAAAAAGTTATAAGGAGGCACAGGAGGAGTTGCTGGAGTTTCAAGAGGGCAGCAGAGAGCTGGAAACCGAGCTGGAGACACAACTGGGCCAAGCGGAGCATCGAATCAGAGACTTGCAGGCAGACAATCAGAGACTGCAGCATGAGCTCGACTCGCTCAAGGAGAAGCTGGAATATCAGTATGCTCAGAGCTATAAACAGATCTCTGTGCTGGAGGACGACCTCAGCCAGACTCGAGGCATCAAGGAACAGCTGCATAAATATGTCCGAGAGTTAGAACAGGCCAATGACGACCTGGAGAGAGCTAAGAGagccaccataACATCTCTGGAGGACTTTGAGCAGAGGCTGAACCAGGCCATCGAGAGGAACGCTTTTCTGGAGAGTGAACTGGATGAGAAAGAATCTCTCCTTGTGTCTGTGCAGAGACTAAAAGATGAAGCCAGAGACTTGCGGCAAGAGCTTGCAGTGCGAGACACCAGGTCAGAGGTGACGAGAATGTCAGCTCCCAGCTCTCCGACTCCGGATAACGACAAAACAGACTCTGCGGTCCAGGCATCCCTTTCTCTGCCTGCTACACCTCTTAGCAAGAATCTGGACAATGCTTTCACCAGTCAGACAGTTCTGGCCAACGGCTCCACTAACGCAGCCCTCACACCATCTGCTAGAATATCAGCGCTCAATATTGTGGGCGATTTACTGCGCAAAGTTGGGGCTTTGGAGTCTAAGCTCGCAGCTTGTCGAAATTTTGCAAAGGACCAGGCAGCCAGAAAGAACTATGTTACCAACGTCAACGGCAATCTGATTAATGGCGACATTTCAAATTACTCTCATTCGCTCCACACATCCTACTTCGACAAAGCCAGGACGGTGAACGGTTTGGACCCCGGTGACGCGACACACATCACAGCCCCACCGCGATCCAACTCTCCATCTGGCCTGGTCCTCAGCGTATAAAACACACTCAGACTCCATTTATATCCACTATACAGCAATATAATACACTACTGAAGCTGAGTCCACCCTACAGTGGGGTTTACAACAAGGTTGGTAATGGGAGCCCTTCTGTAGCAGCACCTCATAACTCGGTTATAGTCTCGGTTCGCAATATACTACATGAAGTACTTGTTAATAGTTGTTAAAGATGTACAGTATATACCCTGACCTAATATATTTATGGTTACCGTTCATTTAGCATTCATGTACATATTTACGTTGTTTTCTgtttgttatggatgtgatgtCTTCTAACACAatccaaaaaatgtatttattgctATAGTGTTGGATCGCAACGTATGTGAAACCTGAAAACAAAGggaatttataatattaatgtatGTTGTGCGATAACTGCACCTGTTTGTGTAAGAAAGTAGACCTGatatataatgatatactgtataattGATGGAAAAAGGATGGCTATCTAGACTTACATGTGCACTTATATGTCATTTTTATCCccagttatacattttttttattattaagtgctAATGTGTGCCTCAGATGGTTGAACTTACTGTATTTCTGTGGCCTGGTGTGAAGCGTCTTTGGAGTTGCACATGAAGGATTGGTTTTGGCTTCAGCAGGTTTGTATTGGAACACTGGTTTTAGTCATTCTGACAATCGACTGCTGTAGTAATACTGTATAATACATTTGCTATCGAGTCTCAGGTTGGTTTCCCAGCCTCATAGTGTTTGTATTGATTTTCATACCTTATTTGTCTCCTTGAATGAGATATCTTACTCGTTTTGCTTTGTATAGTGCAATGTGTTCCCAAAAGCACCTTTTGTTACTTTATTTGTTGCTCAAATAAACTGTTGAGTTCTGA
>TCONS_00009391
AGGTTTATCTGTCATGGATGCAAATATGATACCAAAATTCACCACTAAAGAGGAGGAAATTGACTTCTGGAAGGCTCTTTCACTCAAGTACAAAAAAAGTTATAAGGAGGCACAGGAGGAGTTGCTGGAGTTTCAAGAGGGCAGCAGAGAGCTGGAAACCGAGCTGGAGACACAACTGGGCCAAGCGGAGCATCGAATCAGAGACTTGCAGGCAGACAATCAGAGACTGCAGCATGAGCTCGACTCGCTCAAGGAGAAGCTGGAATATCAGTATGCTCAGAGCTATAAACAGATCTCTGTGCTGGAGGACGACCTCAGCCAGACTCGAGGCATCAAGGAACAGCTGCATAAATATGTCCGAGAGTTAGAACAGGCCAATGACGACCTGGAGAGAGCTAAGAGagccaccataACATCTCTGGAGGACTTTGAGCAGAGGCTGAACCAGGCCATCGAGAGGAACGCTTTTCTGGAGAGTGAACTGGATGAGAAAGAATCTCTCCTTGTGTCTGTGCAGAGACTAAAAGATGAAGCCAGAGACTTGCGGCAAGAGCTTGCAGTGCGAGACACCAGGTCAGAGGTGACGAGAATGTCAGCTCCCAGCTCTCCGACTCCGGATAACGACAAAACAGACTCTGCGGTCCAGGCATCCCTTTCTCTGCCTGCTACACCTCTTAGCAAGAATCTGGACAATGCTTTCACCAGTCAGACAGTTCTGGCCAACGGCTCCACTAACGCAGCCCTCACACCATCTGCTAGAATATCAGCGCTCAATATTGTGGGCGATTTACTGCGCAAAGTTGGGGCTTTGGAGTCTAAGCTCGCAGCTTGTCGAAATTTTGCAAAGGACCAGGCAGCCAGAAAGAACTATGTTACCAACGTCAACGGCAATCTGATTAATGGCGACATTTCAAATTACTCTCATTCGCTCCACACATCCTACTTCGACAAAGCCAGGACGGTGAACGGTTTGGACCCCGGTGACGCGACACACATCACAGCCCCACCGCGATCCAACTCTCCATCTGGCCTGGTCCTCAGCGTATAA

Function

symbol description
ndel1a Predicted to enable microtubule binding activity. Predicted to be involved in several processes, including centrosome localization; microtubule cytoskeleton organization; and vesicle transport along microtubule. Predicted to act upstream of or within nervous system development and neurofilament cytoskeleton organization. Predicted to be located in cytoplasm; microtubule; and spindle. Predicted to be part of kinesin complex. Predicted to be active in centrosome and kinetochore. Is expressed in immature eye; nervous system; and trigeminal placode. Orthologous to human NDEL1 (nudE neurodevelopment protein 1 like 1).

GO:

id name namespace
GO:0016477 cell migration biological_process
GO:0010975 regulation of neuron projection development biological_process
GO:0000132 establishment of mitotic spindle orientation biological_process
GO:0007020 microtubule nucleation biological_process
GO:0007059 chromosome segregation biological_process
GO:0047496 vesicle transport along microtubule biological_process
GO:2000574 regulation of microtubule motor activity biological_process
GO:0051303 establishment of chromosome localization biological_process
GO:0007100 mitotic centrosome separation biological_process
GO:0007399 nervous system development biological_process
GO:0051642 centrosome localization biological_process
GO:0060052 neurofilament cytoskeleton organization biological_process
GO:0000776 kinetochore cellular_component
GO:0005813 centrosome cellular_component
GO:0005819 spindle cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005871 kinesin complex cellular_component
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040115-2 Predicted to enable microtubule binding activity. Predicted to be involved in several processes, including centrosome localization; microtubule cytoskeleton organization; and vesicle transport along microtubule. Predicted to act upstream of or within nervous system development and neurofilament cytoskeleton organization. Predicted to be located in cytoplasm; microtubule; and spindle. Predicted to be part of kinesin complex. Predicted to be active in centrosome and kinetochore. Is expressed in immature eye; nervous system; and trigeminal placode. Orthologous to human NDEL1 (nudE neurodevelopment protein 1 like 1).

Ensembl:

ensembl_id ENSDARG00000010953

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009390 False 2023 mRNA 0.44 9 26467847 26487363
TCONS_00009391 True 1048 mRNA 0.50 8 26471712 26486482

Neighbor

gene id symbol gene type direction distance location
XLOC_004742 itgb3b coding upstream 6103 26434478 ~ 26461744 (+)
XLOC_004741 mmrn2b coding upstream 519368 25945560 ~ 25948479 (+)
XLOC_004740 glud1b coding upstream 585903 25845494 ~ 25881944 (+)
XLOC_004739 epas1a coding upstream 637579 25775734 ~ 25830268 (+)
XLOC_004737 prkcea coding upstream 697615 25640480 ~ 25770232 (+)
XLOC_004744 NA coding downstream 1990 26489353 ~ 26491973 (+)
XLOC_004745 armc7 coding downstream 4274 26491637 ~ 26494851 (+)
XLOC_004746 chad coding downstream 25206 26512569 ~ 26525699 (+)
XLOC_004747 faap100 coding downstream 51498 26538861 ~ 26547248 (+)
XLOC_004748 NA coding downstream 102281 26589644 ~ 26593298 (+)
XLOC_004738 CR932018.1 non-coding upstream 819604 25648127 ~ 25648243 (+)
XLOC_004735 NA non-coding upstream 963467 25502406 ~ 25504380 (+)
XLOC_004733 CR932077.1 non-coding upstream 1037476 25312018 ~ 25430371 (+)
XLOC_004731 CR848736.1 non-coding upstream 1253120 25201543 ~ 25214727 (+)
XLOC_004728 CR385067.1 non-coding upstream 1392727 25073305 ~ 25075120 (+)
XLOC_004751 NA non-coding downstream 204456 26691819 ~ 26692051 (+)
XLOC_004752 NA non-coding downstream 250068 26737431 ~ 26834192 (+)
XLOC_004754 BX469896.1 non-coding downstream 406958 26894321 ~ 26896616 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_05946534_05948489 NDEL1A, NDEL1B, NDEL1 coding CI01000063 null 5946534 ~ 5948532 (+)