ybey (ybey)


Basic Information

Item Value
gene id ybey
gene name ybey
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 5209102 ~ 5211902 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU164440
CGTTATGGCTATCCCCGCTACTGCCAACGTTGTGACCGATTCATTGGTCAAATAGGTTTTCCACAGGCGAGGAGCCATTTTCCGTAAACGTTAGAATATGTTTAATGTCTCTCAACTATGTTGTTATCTAGCTACACACCCCAGAGAAAGCGTACATAATCAGTTTCGGGGACGTAACGTTACATGTTGCTACTGCCGCCGGGACGTGTCACCTTGAATTCTGCCTGCCGCTCTTTGGCTAACGCAAAGCTGACCCACTCTTATCGTACCGCCACAGAAGTATTGCAACTGGCCGTGGTCGGTGGTTGGATAGTTTCAACGTTATCTATGTCTCAGGAATTGCCAAATAACCGTTTTCTCTTTTTACGCCGAATTTTAAAATGGGAGTAGTGCTGCGGAATCTCCAAAAGGTGGTGCCTCTTCGCCGCGCCAGACTGCGCAAGGATGTTGATACACTGAGGCACATACTGGGCATCCACAAATTTGACCTGGGCATCGTTTGCGTGGATAACAGCAGGATTCAgcaaattaataatatatacagaaagaaaaatgtGCCAACTGATGTCCTCTCATTTCCATTCTACGAGGGATGAGCTGAACCTTGGGGACATTTTCTTGGGTGTCGAGTTTGTGATGAAGCAGTGTAAGGAGGAAGCCCTAGATCTGCATGGAACCCTCACTGTTGTCACTGCACATGGTATCTGTCACCTGTTGGGCTACAGACATGAGACGGAGGAAGAGTGGACTGAGATGCTGCAGAGGGAACACTACATTTTAAGTGAGTACAACAGACTCACAGGGAGACATCTGGAGCCACTGATGAAGAGATGCAGTCAGGACAGGTGACAATGACTGTCAACCTGCCAGCTTTACACTCACACTATGGTGCTTGCTATTGTTTTTCACTACCTTTTTAACCAGGTGGACTACTGTTCTGAGTGTATTTACTGTCATGCTGTCTTCTCCACAATCTGCGACTACTGCTTTTAAGGACTTTAATCAACCGGCAGACGTACAGCGGTTTGATTGTGGATATCATCTTCAAACACTGGAT
>XM_039818829.1
CCGGTTCCGGTCCGACAATCTTTTAGGTCCCCGTTATGGCTATCCCCGCTACTGCCAACGTTGTGACCGATTCATTGGTCAAATAGGTTTTCCACAGGCGAGGAGCCATTTTCCGTAAACGTTAGAATATGTTTAATGTCTCTCAACTATGTTGTTATCTAGCTACACACCCCAGAGAAAGCGTACATAATCAGTTTCGGGGACGTAACGTTACATGTTGCTACTGCCGCCGGGACGTGTCACCTTGAATTCTGCCTGCCGCTCTTTGGCTAACGCAAAGCTGACCCACTCTTATCGTACCGCCACAGAAGTATTGCAACTGGCCGTGGTCGGTGGTTGGATAGTTTCAACGTTATCTATGTCTCAGGAATTGCCAAATAACCGTTTTCTCTTTTTACGCCGAATTTTAAAATGGGAGTAGTGCTGCGGAATCTCCAAAAGGTGGTGCCTCTTCGCCGCGCCAGACTGCGCAAGGATGTTGATACACTGAGGCACATACTGGGCATCCACAAATTTGACCTGGGCATCGTTTGCGTGGATAACAGCAGGATTCAgcaaattaataatatatacagaaagaaaaatgtGCCAACTGATGTCCTCTCATTTCCATTCTACGAGGACCTGAGGCCTGGTAAACTGCCTTCCCCCCTTCACAGGGATGAGCTGAACCTTGGGGACATTTTCTTGGGTGTCGAGTTTGTGATGAAGCAGTGTAAGGAGGAAGCCCTAGATCTGCATGGAACCCTCACTGTTGTCACTGCACATGGTATCTGTCACCTGTTGGGCTACAGACATGAGACGGAGGAAGAGTGGACTGAGATGCTGCAGAGGGAACACTACATTTTAAGTGAGTACAACAGACTCACAGGGAGACATCTGGAGCCACTGATGAAGAGATGCAGTCAGGACAGGTGACAATGACTGTCAACCTGCCAGCTTTACACTCACACTATGGTGCTTGCTATTGTTTTTCACTACCTTTTTAACCAGGTGGACTACTGTTCTGAGTGTATTTACTGTCATGCTGTCTTCTCCACAATCTGCGACTACTGCTTTTAAGGACTTTAATCAACCGGCAGACGTACAGCGGTTTGATTGTGGATATCATCTTCAAACACTGGATGTGAGTGTTGTTACAGAGTTTtaaacatcaaataaaaaaaaataagtctgTGCA

Function

symbol description
ybey Predicted to enable endonuclease activity; metal ion binding activity; and metalloendopeptidase activity. Predicted to act upstream of or within rRNA processing. Orthologous to human YBEY (ybeY metalloendoribonuclease).

NR:

description
putative ribonuclease isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU164440 False 1057 TUCP 0.46 4 5209133 5211848
XM_039818829.1 True 1180 mRNA 0.46 4 5209102 5211902

Neighbor

gene id symbol gene type direction distance location
LOC120569312 NA coding upstream 83715 5119138 ~ 5125387 (+)
LOC120570421 lss,LOC104947466 coding upstream 93397 5114326 ~ 5115705 (+)
pms1 pms1 coding upstream 177214 5001871 ~ 5031888 (+)
adat3 adat3 coding upstream 211165 4986533 ~ 4997937 (+)
cnot9 cnot9,LOC103372475,LOC106524050 coding downstream 20468 5232370 ~ 5242872 (+)
LOC120570455 plcd4,LOC103372476 coding downstream 32236 5244138 ~ 5265908 (+)
LOC120570203 LOC103368839,LOC101465291,LOC102206386 coding downstream 77181 5289083 ~ 5296603 (+)
tns1b tns1 coding downstream 92664 5304566 ~ 5552162 (+)
LOC120570043 NA coding downstream 355524 5567426 ~ 5570358 (+)
G122235 NA non-coding upstream 35871 5118038 ~ 5173231 (+)
G122224 NA non-coding upstream 55552 5095927 ~ 5153550 (+)
G122225 NA non-coding upstream 56219 5094624 ~ 5152883 (+)
LOC120569313 NA non-coding upstream 86442 5119223 ~ 5122660 (+)
G122148 NA non-coding upstream 235365 4972851 ~ 4973737 (+)
G122266 usp37 non-coding downstream 3898 5215800 ~ 5216949 (+)
G122317 NA non-coding downstream 75572 5287474 ~ 5288145 (+)
G122319 NA non-coding downstream 84752 5296654 ~ 5297055 (+)
G122320 NA non-coding downstream 85233 5297135 ~ 5298605 (+)
G122321 NA non-coding downstream 86972 5298874 ~ 5299221 (+)
G122226 NA other upstream 43204 5164233 ~ 5165898 (+)
LOC120569936 LOC102781033,LOC104920804 other upstream 138854 5060001 ~ 5070248 (+)
fkbp7 fkbp7,LOC102196462,LOC104949636 other upstream 226123 4974789 ~ 4982979 (+)
G122128 NA other upstream 313600 4894785 ~ 4895502 (+)
zgc:136439 LOC103367146,LOC106581848,LOC101483704 other upstream 390963 4816089 ~ 4818139 (+)
G122588 NA other downstream 1934723 7146625 ~ 7149039 (+)
hdac4 LOC103356262 other downstream 2958798 8170700 ~ 8316693 (+)
G122846 NA other downstream 3583551 8795453 ~ 8796746 (+)
umps umps other downstream 4708722 9920624 ~ 9928891 (+)
lrp1bb lrp1b,LOC102779748 other downstream 5124089 10335991 ~ 10618696 (+)

Expression


Co-expression Network