G122320


Basic Information

Item Value
gene id G122320
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 5297135 ~ 5298605 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU164534
gctAACCTccattttgtttgacaatacttaaacaagaagtgacatcacccaacatcgcttagagcagctttaaagtgcccatattatgaaaaaaaacactttttctggtatttggggtgttcttttgtgtctctggtgcttccacacacatacaaactttgaaaaaaatccatccatgctgttttgagtgagatacggtttctgaatgtgtcctgccttcagtctcctagtgagctgttcaaaatcggctcggactgtgacgtcacagtccgaaatgagctggctaaccgcaaccgttagctcgtagcgttagcattagaatgctaacgctaatgctaacactagcatggtacctcgttctcaatagcaaagcactgctacaacacacataagttcaccataatctacaaaagaactacttacatgtgcgccctcatttagaagtctcccagctaatcctgccttgtaactgactgaagttggagaaacagcctgtcttttacttctatggagctagctagctgacatgatctacatctgagctactgagcatgtgcgagtgcaatcaaagatagtacagaagaagaagatgaaaagaggtctcactctgtagctaaaacagaaaccaggtgaaaagaggatctacagcaggtagagagagctgtgcagtacaacaaaaatatggtgttttttgaaaattaaaccatgtaaacctattctggtacaaccttaaaatacaattatgaacctgaaaatgagtataatatgggcgctttaaagctccatcagtctgtgactggACCCAGGCGGGCCCTTTTGGCACCAACATTTGCCACCAgaggcccgtttcagaaagcaggtttagggaaaactctgagtttgttaaccctgagatgagggaatctctgggttttctgtttcagaaagagaggtaacttaacctcagagtcagttactatggtaactgagcctgtgaacctaacctgatcgggagcaggttttcttcaagaaacctcaagtttctctcagtctccccatggatgtattaagagaacgctcctccctctgacacagcgctctttcatttcctcattcagtctgtatccggtgcattttagcgcagtttgttatcggcatgaataaaaaaaattgtgttggtttattaaccgtGTTAGGCAGacttaaaacgttttttttttcttctaaaaacatggcatttccttttgttgacgatcccgttgatgaagaagctgctttacttcgcagggtgttttttatatatacagtacaggccaaaagtttggacacaccttctcattcaatgtgtttctttattttcatgactatttacattgtagattctcactgaaggcatcaaaactatgaatgaacacatatggaattatgtacttaacaaaaaagtgtgaaataactgaaaacatgtcttatattttagattcttcaaagtagc

Function

GO:

id name namespace
GO:0006936 muscle contraction biological_process
GO:0006941 striated muscle contraction biological_process
GO:0021872 forebrain generation of neurons biological_process
GO:0021879 forebrain neuron differentiation biological_process
GO:0021884 forebrain neuron development biological_process
GO:0021954 central nervous system neuron development biological_process
GO:0003012 muscle system process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0060048 cardiac muscle contraction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU164534 True 1471 lncRNA 0.40 1 5297135 5298605

Neighbor

gene id symbol gene type direction distance location
LOC120570203 LOC103368839,LOC101465291,LOC102206386 coding upstream 532 5289083 ~ 5296603 (+)
LOC120570455 plcd4,LOC103372476 coding upstream 31227 5244138 ~ 5265908 (+)
cnot9 cnot9,LOC103372475,LOC106524050 coding upstream 54263 5232370 ~ 5242872 (+)
LOC120569312 NA coding upstream 171748 5119138 ~ 5125387 (+)
LOC120570421 lss,LOC104947466 coding upstream 181430 5114326 ~ 5115705 (+)
tns1b tns1 coding downstream 5961 5304566 ~ 5552162 (+)
LOC120570043 NA coding downstream 268821 5567426 ~ 5570358 (+)
LOC120569854 LOC103364251,LOC104945362,LOC101061545 coding downstream 624089 5922694 ~ 5937121 (+)
LOC120569363 NA coding downstream 703236 6001841 ~ 6009742 (+)
col5a2a col5a2,LOC103365627 coding downstream 849967 6148572 ~ 6228385 (+)
G122319 NA non-coding upstream 80 5296654 ~ 5297055 (+)
G122317 NA non-coding upstream 8990 5287474 ~ 5288145 (+)
G122266 usp37 non-coding upstream 80186 5215800 ~ 5216949 (+)
G122235 NA non-coding upstream 123904 5118038 ~ 5173231 (+)
G122224 NA non-coding upstream 143585 5095927 ~ 5153550 (+)
G122321 NA non-coding downstream 269 5298874 ~ 5299221 (+)
G122349 NA non-coding downstream 262197 5560802 ~ 5561861 (+)
LOC120569309 NA non-coding downstream 266636 5565241 ~ 5566728 (+)
G122374 NA non-coding downstream 712027 6010632 ~ 6011905 (+)
G122390 NA non-coding downstream 764028 6062633 ~ 6062883 (+)
ybey ybey other upstream 85233 5209102 ~ 5211902 (+)
G122226 NA other upstream 131237 5164233 ~ 5165898 (+)
LOC120569936 LOC102781033,LOC104920804 other upstream 226887 5060001 ~ 5070248 (+)
fkbp7 fkbp7,LOC102196462,LOC104949636 other upstream 314156 4974789 ~ 4982979 (+)
G122128 NA other upstream 401633 4894785 ~ 4895502 (+)
G122588 NA other downstream 1848020 7146625 ~ 7149039 (+)
hdac4 LOC103356262 other downstream 2872095 8170700 ~ 8316693 (+)
G122846 NA other downstream 3496848 8795453 ~ 8796746 (+)
umps umps other downstream 4622019 9920624 ~ 9928891 (+)
lrp1bb lrp1b,LOC102779748 other downstream 5037386 10335991 ~ 10618696 (+)

Expression


Co-expression Network