tmeff2a (tmeff2)


Basic Information

Item Value
gene id tmeff2a
gene name tmeff2
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 7181931 ~ 7317632 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU164950
AGCAAAGCTACAAAGTAAACCGGAGGGACCGCTGCGCTCGTGCAGGAGAGCTGCTCGTCTCACCCGTGGATACTATCACACAACCGCCGTCATCTCCAAACCCTGTCCGTGGgatacctacctacctacctaatcTGGCTACATCCTCTTGAGTTTTACAGTTGTAttacctcctttttttttatcacctcccccccccccccttttttttcctcttctcatcttttcttctccctctcctcatctTTGAGCATCATCCCCTTCTGGCAAGTCGTCTTTGCCTGCCTGGCTAACTTTTCCAGCCTGACTCCATCccacacaacaacaaccaccaccacctcctccatcgCTCACCAACCCCTCGGCAGTTTCCCACCCTCCAGTCCTCCCTCTTATCGCAGCAGCCTCCCTCCCCTGGATCGGGCGGAACCCATTCGGTCAGTCTACACCGGGGGGGGCACtgctacatggggcgcacggtCTCGCACGGAAAATGGTCTGCAGTCGGTATCTAGGCGCCCCGCTGAACCTGCAGGGACTGGAGTTGTCGGAACGGAGTGTCTGCGTCTCTTCCCCGCGTCGCGTGTGCTGTCGTGGCCAGTGAGATATGGGTCTCTCCGCGGCGGCGCAGGCACCGCTCGAGGAGCCCCGGCGGCTGCGCCAGTGGAGCGGGACGGCGGGAGGCTGGCTCCGGATCACGCTCGTCTCGTTTCTCGCCACTTTACCTGTGGAGCAGCTGCGCgccttcccttcctccctcagCGACTGCCAGACGCCGACCGGCTGGAACTGCTCCGGTTTTGATGACCGGGACACGGACCTGTTCTTGTGCGACACCAACGCCTGCAAGTTCGATGGGGAGTGTCTAAGAATTGGAAACATGGTGAAGTGCATTTGTGACTTTAAGtGCAACAATGACTATACCCCAGTGTGCGGCTCCAACAATCAGAACTACCAGAACGAGTGTTTCCTGCGCAGGGATGCCTGCAAGCAGCAGTCTGAAGTACTCATAATGTCAGAAGGAAACGTCCACCTGTGATATTTGCCAGTTTGGTGCTGAATGCGATGTGGACGCGGAGGATGTTTGCTTCAACCCGGTGTGTGCCTCAGACGGTCGTTCCTATGACAACCCCTGCCAGGTGAAGGAGGCGTCCTGTCAGAAGCAGGAACGCATCGAGGTCAAGTACCTGGGCCACTGCCAAGGCGACATCAAAGGCGGAGATGGACACTTTGCACGGACCGACCTCACAGAGGAAAAAGAGGATCCGAGGAACGAGCTGGCCCGCGGCCTGTACATCCCCTGTCCAGACCACTACAAAAACTACTGCGTCCACGGAGAGTGTCAGTTCCCCAGTATTCTGGCCCAGCCCTCCtgcagCTGTCACTCGGGTTTCAGAGGCCCCCAGTGTGACATCAAAGAGTACAACGTGCTCTATGTGGTGCCAGGCTCTGGCAAACTGCACTATGTCCTCATCGCCTCTATCATTGGAGCACTCCAGGTGGTCATCATCTGCGTGGTGGTGCTCTGCATTACCAGGAAGTGCCCGCGGACCAACCGGATCAACCGGCAGAAGCAGAACAATGTCCATTTCAGTACGGAGAACACCATGCGCGCCTCCACCCGGCTTATCTGAGCCcagacacccccaccccccggACAGAGTCCCCTCTCCACTTTATGGAGCGCTG
>XM_039818566.1
gagaccaactCGCTGCGACTCTGAACGCTCCGCACATAGCAAAGCTACAAAGTAAACCGGAGGGACCGCTGCGCTCGTGCAGGAGAGCTGCTCGTCTCACCCGTGGATACTATCACACAACCGCCGTCATCTCCAAACCCTGTCCGTGGgatacctacctacctacctaatcTGGCTACATCCTCTTGAGTTTTACAGTTGTAttacctcctttttttttatcacctcccccccccccccttttttttcctcttctcatcttttcttctccctctcctcatctTTGAGCATCATCCCCTTCTGGCAAGTCGTCTTTGCCTGCCTGGCTAACTTTTCCAGCCTGACTCCATCccacacaacaacaaccaccaccacctcctccatcgCTCACCAACCCCTCGGCAGTTTCCCACCCTCCAGTCCTCCCTCTTATCGCAGCAGCCTCCCTCCCCTGGATCGGGCGGAACCCATTCGGTCAGTCTACACCGGGGGGGGCACtgctacatggggcgcacggtCTCGCACGGAAAATGGTCTGCAGTCGGTATCTAGGCGCCCCGCTGAACCTGCAGGGACTGGAGTTGTCGGAACGGAGTGTCTGCGTCTCTTCCCCGCGTCGCGTGTGCTGTCGTGGCCAGTGAGATATGGGTCTCTCCGCGGCGGCGCAGGCACCGCTCGAGGAGCCCCGGCGGCTGCGCCAGTGGAGCGGGACGGCGGGAGGCTGGCTCCGGATCACGCTCGTCTCGTTTCTCGCCACTTTACCTGTGGAGCAGCTGCGCgccttcccttcctccctcagCGACTGCCAGACGCCGACCGGCTGGAACTGCTCCGGTTTTGATGACCGGGACACGGACCTGTTCTTGTGCGACACCAACGCCTGCAAGTTCGATGGGGAGTGTCTAAGAATTGGAAACATGGTGAAGTGCATTTGTGACTTTAAGtGCAACAATGACTATACCCCAGTGTGCGGCTCCAACAATCAGAACTACCAGAACGAGTGTTTCCTGCGCAGGGATGCCTGCAAGCAGCAGTCTGAAGTACTCATAATGTCAGAAGGTGCCTGCCCTGCTGATGCAGGCTCAGGATCAGGAGACGACGGAGGAGAGGGCTCCGCCGAGGCAGGGCAGAAGGAAACGTCCACCTGTGATATTTGCCAGTTTGGTGCTGAATGCGATGTGGACGCGGAGGATGTTTGGTGCGTTTGCAACATCGACTGTTCCCACATCAGCTTCAACCCGGTGTGTGCCTCAGACGGTCGTTCCTATGACAACCCCTGCCAGGTGAAGGAGGCGTCCTGTCAGAAGCAGGAACGCATCGAGGTCAAGTACCTGGGCCACTGCCAAGGCGACATCAAAGGCGGAGATGGACACTTTGCACGGACCGACCTCACAGTAGAGGAAAAAGAGGATCCGAGGAACGAGCTGGCCCGCGGCCTGTACATCCCCTGTCCAGACCACTACAAAAACTACTGCGTCCACGGAGAGTGTCAGTTCCCCAGTATTCTGGCCCAGCCCTCCtgcagCTGTCACTCGGGTTTCAGAGGCCCCCAGTGTGACATCAAAGAGTACAACGTGCTCTATGTGGTGCCAGGCTCTGGCAAACTGCACTATGTCCTCATCGCCTCTATCATTGGAGCACTCCAGGTGGTCATCATCTGCGTGGTGGTGCTCTGCATTACCAGGAAGTGCCCGCGGACCAACCGGATCAACCGGCAGAAGCAGAACAATGTCCATTTCAGTACGGAGAACACCATGCGCGCCTCCACCCGGCTTATCTGAGCCcagacacccccaccccccggACAGAGTCCCCTCTCCACTTTATGGAGCGCTGTGGCGTCAGATGTT
>XM_039818567.1
agagaccaactCGCTGCGACTCTGAACGCTCCGCACATAGCAAAGCTACAAAGTAAACCGGAGGGACCGCTGCGCTCGTGCAGGAGAGCTGCTCGTCTCACCCGTGGATACTATCACACAACCGCCGTCATCTCCAAACCCTGTCCGTGGgatacctacctacctacctaatcTGGCTACATCCTCTTGAGTTTTACAGTTGTAttacctcctttttttttatcacctcccccccccccccttttttttcctcttctcatcttttcttctccctctcctcatctTTGAGCATCATCCCCTTCTGGCAAGTCGTCTTTGCCTGCCTGGCTAACTTTTCCAGCCTGACTCCATCccacacaacaacaaccaccaccacctcctccatcgCTCACCAACCCCTCGGCAGTTTCCCACCCTCCAGTCCTCCCTCTTATCGCAGCAGCCTCCCTCCCCTGGATCGGGCGGAACCCATTCGGTCAGTCTACACCGGGGGGGGCACtgctacatggggcgcacggtCTCGCACGGAAAATGGTCTGCAGTCGGTATCTAGGCGCCCCGCTGAACCTGCAGGGACTGGAGTTGTCGGAACGGAGTGTCTGCGTCTCTTCCCCGCGTCGCGTGTGCTGTCGTGGCCAGTGAGATATGGGTCTCTCCGCGGCGGCGCAGGCACCGCTCGAGGAGCCCCGGCGGCTGCGCCAGTGGAGCGGGACGGCGGGAGGCTGGCTCCGGATCACGCTCGTCTCGTTTCTCGCCACTTTACCTGTGGAGCAGCTGCGCgccttcccttcctccctcagCGACTGCCAGACGCCGACCGGCTGGAACTGCTCCGGTTTTGATGACCGGGACACGGACCTGTTCTTGTGCGACACCAACGCCTGCAAGTTCGATGGGGAGTGTCTAAGAATTGGAAACATGGTGAAGTGCATTTGTGACTTTAAGtGCAACAATGACTATACCCCAGTGTGCGGCTCCAACAATCAGAACTACCAGAACGAGTGTTTCCTGCGCAGGGATGCCTGCAAGCAGCAGTCTGAAGTACTCATAATGTCAGAAGGTGCCTGCCCTGCTGATGCAGGCTCAGGATCAGGAGACGACGGAGGAGAGGGCTCCGCCGAGGCAGGGCAGAAGGAAACGTCCACCTGTGATATTTGCCAGTTTGGTGCTGAATGCGATGTGGACGCGGAGGATGTTTGGTGCGTTTGCAACATCGACTGTTCCCACATCAGCTTCAACCCGGTGTGTGCCTCAGACGGTCGTTCCTATGACAACCCCTGCCAGGTGAAGGAGGCGTCCTGTCAGAAGCAGGAACGCATCGAGGTCAAGTACCTGGGCCACTGCCAAGGCGACATCAAAGGCGGAGATGGACACTTTGCACGGACCGACCTCACAGAGGAAAAAGAGGATCCGAGGAACGAGCTGGCCCGCGGCCTGTACATCCCCTGTCCAGACCACTACAAAAACTACTGCGTCCACGGAGAGTGTCAGTTCCCCAGTATTCTGGCCCAGCCCTCCtgcagCTGTCACTCGGGTTTCAGAGGCCCCCAGTGTGACATCAAAGAGTACAACGTGCTCTATGTGGTGCCAGGCTCTGGCAAACTGCACTATGTCCTCATCGCCTCTATCATTGGAGCACTCCAGGTGGTCATCATCTGCGTGGTGGTGCTCTGCATTACCAGGAAGTGCCCGCGGACCAACCGGATCAACCGGCAGAAGCAGAACAATGTCCATTTCAGTACGGAGAACACCATGCGCGCCTCCACCCGGCTTATCTGAGCCcagacacccccaccccccggACAGAGTCCCCTCTCCACTTTATGGAGCGCTGTGGCGTCAGATGTT
>XM_039818568.1
gagagaccaactCGCTGCGACTCTGAACGCTCCGCACATAGCAAAGCTACAAAGTAAACCGGAGGGACCGCTGCGCTCGTGCAGGAGAGCTGCTCGTCTCACCCGTGGATACTATCACACAACCGCCGTCATCTCCAAACCCTGTCCGTGGgatacctacctacctacctaatcTGGCTACATCCTCTTGAGTTTTACAGTTGTAttacctcctttttttttatcacctcccccccccccccttttttttcctcttctcatcttttcttctccctctcctcatctTTGAGCATCATCCCCTTCTGGCAAGTCGTCTTTGCCTGCCTGGCTAACTTTTCCAGCCTGACTCCATCccacacaacaacaaccaccaccacctcctccatcgCTCACCAACCCCTCGGCAGTTTCCCACCCTCCAGTCCTCCCTCTTATCGCAGCAGCCTCCCTCCCCTGGATCGGGCGGAACCCATTCGGTCAGTCTACACCGGGGGGGGCACtgctacatggggcgcacggtCTCGCACGGAAAATGGTCTGCAGTCGGTATCTAGGCGCCCCGCTGAACCTGCAGGGACTGGAGTTGTCGGAACGGAGTGTCTGCGTCTCTTCCCCGCGTCGCGTGTGCTGTCGTGGCCAGTGAGATATGGGTCTCTCCGCGGCGGCGCAGGCACCGCTCGAGGAGCCCCGGCGGCTGCGCCAGTGGAGCGGGACGGCGGGAGGCTGGCTCCGGATCACGCTCGTCTCGTTTCTCGCCACTTTACCTGTGGAGCAGCTGCGCgccttcccttcctccctcagCGACTGCCAGACGCCGACCGGCTGGAACTGCTCCGGTTTTGATGACCGGGACACGGACCTGTTCTTGTGCGACACCAACGCCTGCAAGTTCGATGGGGAGTGTCTAAGAATTGGAAACATGGTGAAGTGCATTTGTGACTTTAAGtGCAACAATGACTATACCCCAGTGTGCGGCTCCAACAATCAGAACTACCAGAACGAGTGTTTCCTGCGCAGGGATGCCTGCAAGCAGCAGTCTGAAGTACTCATAATGTCAGAAGGTGCCTGCCCTGCTGATGCAGGCTCAGGATCAGGAGACGACGGAGGAGAGGGCTCCGCCGAGGCAGGGCAGAAGGAAACGTCCACCTGTGATATTTGCCAGTTTGGTGCTGAATGCGATGTGGACGCGGAGGATGTTTGGTGCGTTTGCAACATCGACTGTTCCCACATCAGCTTCAACCCGGTGTGTGCCTCAGACGGTCGTTCCTATGACAACCCCTGCCAGGTGAAGGAGGCGTCCTGTCAGAAGCAGGAACGCATCGAGGTCAAGTACCTGGGCCACTGCCAAGTAGAGGAAAAAGAGGATCCGAGGAACGAGCTGGCCCGCGGCCTGTACATCCCCTGTCCAGACCACTACAAAAACTACTGCGTCCACGGAGAGTGTCAGTTCCCCAGTATTCTGGCCCAGCCCTCCtgcagCTGTCACTCGGGTTTCAGAGGCCCCCAGTGTGACATCAAAGAGTACAACGTGCTCTATGTGGTGCCAGGCTCTGGCAAACTGCACTATGTCCTCATCGCCTCTATCATTGGAGCACTCCAGGTGGTCATCATCTGCGTGGTGGTGCTCTGCATTACCAGGAAGTGCCCGCGGACCAACCGGATCAACCGGCAGAAGCAGAACAATGTCCATTTCAGTACGGAGAACACCATGCGCGCCTCCACCCGGCTTATCTGAGCCcagacacccccaccccccggACAGAGTCCCCTCTCCACTTTATGGAGCGCTGTGGCGTCAGATGTT

Function

symbol description
tmeff2 Acts upstream of or within negative regulation of cell migration; negative regulation of cellular component organization; and wound healing, spreading of cells. Predicted to be located in extracellular region. Predicted to be active in basement membrane and plasma membrane. Implicated in prostate cancer and urinary bladder cancer. Biomarker of prostate cancer.

NR:

description
PREDICTED: tomoregulin-2

GO: NA

KEGG:

id description
K23608 TMEFF2; tomoregulin-2

RNA

RNA id representative length rna type GC content exon number start site end site
TU164950 False 1689 TUCP 0.58 9 7181945 7317593
XM_039818566.1 True 1850 mRNA 0.58 10 7181931 7317630
XM_039818567.1 False 1848 mRNA 0.58 10 7181931 7317631
XM_039818568.1 False 1804 mRNA 0.58 9 7181931 7317632

Neighbor

gene id symbol gene type direction distance location
trnas-aga_9 NA coding downstream 2773 7179077 ~ 7179158 (-)
cavin2a LOC104959898 coding downstream 14449 7149302 ~ 7167482 (-)
trnas-cga_8 NA coding downstream 37723 7144127 ~ 7144208 (-)
nabp1a nabp1,LOC107092718,LOC105938019 coding downstream 38336 7139032 ~ 7143595 (-)
LOC120569903 NA coding downstream 48289 7131034 ~ 7133642 (-)
dnah7 dnah7 coding upstream 615546 7933178 ~ 8030649 (-)
esyt3 NA coding upstream 714056 8031688 ~ 8053164 (-)
parp14rs1 NA coding upstream 736683 8054315 ~ 8070677 (-)
faima faim,LOC104925879,LOC101481285,LOC102793570 coding upstream 760280 8077912 ~ 8084836 (-)
cxcr2 NA coding upstream 770939 8088571 ~ 8092226 (-)
G122644 NA non-coding downstream 45203 7136478 ~ 7136728 (-)
LOC120569626 NA non-coding downstream 146654 7014183 ~ 7035277 (-)
G122604 NA non-coding downstream 454221 6726720 ~ 6727710 (-)
G122508 NA non-coding downstream 496496 6685226 ~ 6685435 (-)
G122498 calcrl,LOC103374150,LOC102798836 non-coding downstream 552176 6563994 ~ 6629755 (-)
G122656 NA non-coding upstream 247582 7565214 ~ 7565430 (-)
G122660 NA non-coding upstream 305790 7623422 ~ 7624043 (-)
G122677 NA non-coding upstream 511300 7828932 ~ 7913318 (-)
G122802 NA non-coding upstream 874292 8191924 ~ 8192187 (-)
G122814 NA non-coding upstream 996390 8314022 ~ 8316726 (-)
pcbp3 pcbp3,LOC100710924,LOC107660579,LOC103138153 other downstream 310719 6782446 ~ 6871212 (-)
LOC120569614 NA other downstream 499937 6640881 ~ 6681994 (-)
G122404 NA other downstream 1167736 6012040 ~ 6014195 (-)
glsb gls,LOC100711430,LOC102197968,LOC101482051 other downstream 2209320 4917659 ~ 4972611 (-)
col6a3 col6a3 other downstream 3021792 4107999 ~ 4160139 (-)
traf3ip1 traf3ip1 other upstream 1081953 8399585 ~ 8448430 (-)
ccnt2a ccnt2,ccnt2a,LOC104923135,LOC102200362 other upstream 1475989 8793621 ~ 8803104 (-)
G122878 NA other upstream 1681830 8999462 ~ 9000123 (-)
stxbp5l stxbp5l other upstream 3622421 10940053 ~ 11094619 (-)
thsd7ba NA other upstream 3962978 11280610 ~ 11467939 (-)

Expression


Co-expression Network