XLOC_004744


Basic Information

Item Value
gene id XLOC_004744
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 26489353 ~ 26491973 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010940
aCCAGCATAACAAAACATGTTAAACAGgtttatttcaatgatttaaaATGTTTGCACTGTATATGTTTAGacaacattataaagtaccgtctaacgatttttaattaatcaaaaaaaacagaaatgtgtaggctttttatttaaagaaatgaatattttaatcaatATGTTTCCCCTCTAATTCAATCCACATAGTTTTTGTCAGTGCCGTACATTTTAGGAACACATATTTGGCCTACGATTTACACCAATTGCATCTTATCAATGCCTTAACCACATCTTACAAAATATAATCAAGGCAACCAGTTAAAACCATAATTGTCAGcaaaacatgtatatatatacactgtacaaTACTACGTTGGCTATACTTGACTTTCTTTCTACATCACTCAAAGCATCATCAGTCCGATATTAGCAACAACCGAGGACTCAAAGAACACTTCCCGAAATGATATTGGCAAAAAAGGTCCTGTGTTTGTTTTCTTCAGTGGTGGTTTCCTGCAGGTGTGTGTCAGTCGTCTCACCTGCCGCCTGCACTCTTACTTGCAAGTTCCTCCATTTGTTTCTGCCTTCTTTCCAGCACCTCCAGACGTTTGGCCTCATGACGGGATCTTTCCTGCTCTCTGAGATCTGACACATCCTCCATGAACAAAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010940 True 657 lncRNA 0.37 2 26489353 26491973

Neighbor

gene id symbol gene type direction distance location
XLOC_004743 ndel1a coding upstream 1990 26467847 ~ 26487363 (+)
XLOC_004742 itgb3b coding upstream 27609 26434478 ~ 26461744 (+)
XLOC_004741 mmrn2b coding upstream 540874 25945560 ~ 25948479 (+)
XLOC_004740 glud1b coding upstream 607409 25845494 ~ 25881944 (+)
XLOC_004739 epas1a coding upstream 659085 25775734 ~ 25830268 (+)
XLOC_004746 chad coding downstream 20596 26512569 ~ 26525699 (+)
XLOC_004747 faap100 coding downstream 46888 26538861 ~ 26547248 (+)
XLOC_004748 NA coding downstream 97671 26589644 ~ 26593298 (+)
XLOC_004749 si:dkey-148d16.5 coding downstream 116910 26608883 ~ 26611971 (+)
XLOC_004750 arhgap12b coding downstream 129933 26621906 ~ 26726048 (+)
XLOC_004738 CR932018.1 non-coding upstream 841110 25648127 ~ 25648243 (+)
XLOC_004735 NA non-coding upstream 984973 25502406 ~ 25504380 (+)
XLOC_004733 CR932077.1 non-coding upstream 1058982 25312018 ~ 25430371 (+)
XLOC_004731 CR848736.1 non-coding upstream 1274626 25201543 ~ 25214727 (+)
XLOC_004728 CR385067.1 non-coding upstream 1414233 25073305 ~ 25075120 (+)
XLOC_004751 NA non-coding downstream 199846 26691819 ~ 26692051 (+)
XLOC_004752 NA non-coding downstream 245458 26737431 ~ 26834192 (+)
XLOC_004754 BX469896.1 non-coding downstream 402348 26894321 ~ 26896616 (+)
XLOC_004762 dre-mir-10a non-coding downstream 642896 27134869 ~ 27134967 (+)

Expression


Co-expression Network