umps (umps)


Basic Information

Item Value
gene id umps
gene name umps
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 9920624 ~ 9928891 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU165423
GAAGAAACCAGAGCGGAAgtgttgctgctgctgaggaAGCAAAGAGTAGAATGTGTACGAGATCTCCTGAACTGAATACAGACAAGATGGAAAACATCTCCATTGACAGTTTAATCCTGAAGCTCCACGATGTGAACGCGGTGAAATTTGGAGAATACAAGCTGAAGAGCGGCATGCTGACACCCATTTATATCGACCTGAGGGTTCTCGTGTCCTACCCCGCGCTCATGAACCAGGTGTCAAGTCTCATTTACCAGCGAGTGCAAGAAGAGGGACTGCAGTTTGACTCAGTGTGTGGGGTTCCATACACAGCCCTGCCTTTGGCCACAATCATCTGTTCTAGGCATGAATTGCCCATGCTCATCAGGCGAAAGGAGGCCAAGGACTATGGAACCAAGCGTCTGGTGGAGGGCTCGTTTCAGGAGGGGGACATATGCCTGATCATCGAGGACACCGTGACCAGTGGCAGCAGCATCCTGGAGACTGCTGAAGTGCTCAACAAAGGGGGACTAAAgGTGACGGATGCCGTGGTACTAATGGACCGAGAGCAAGGCGGTGTCGATATGTTGGCTTCTCAGGGAATCAAGCTCCATCCCATCATCTCCATGTTCAAGCTGCTCAACGTGCTGCTGGCAGCTGAACGCATCGACGCTCAAACTGCCCAGAATGTCCGCACGTTCATCCAGGACAACAACACGTTCAGGTACAGTCG
>TU165424
ataattccatatgtgttcattcatagttttcatgccttcagtgagaatctacaatgtaaatagtcatgaaaataaagaaacacattgaatgagaaggtgtgtccaaacttttggcgtgcgtgcatgcgtgcgtgtgtgtctgtttatgtatGCTATCGGTCTTTACAGCTGAAGATGGCAGAGGAGCAGTCGGACTTTGTGATCGGCTTCATCTGTGGCTCTAAGATCACCCAGAGGCCAGAGTTCATCCACATGACCCCCGGGGTGCAGATTCAGGCTGGAGGTGATGGGTTGGGCCAGCAGTACTCCACCCCAGAGGAAGTCCTCTACAACAAAGGCTCTGATGTCATCATCGTCGGTCGGGGTATCCTGGAGGCCCCTGATAGGCTGAAAGCTGTTGAATCATACAGAAAGTCCGGCTGGGAGGCTTACACAAAGAGACTGGGCCAGAGTGGCCAATAGGAGCTCAACAAAAGAGTTGCATCTGCATCATTACGTCTAATTTCAAATTTATCCCGCGACTCTAATAAAGGACCTCTGCGGATTACCTTAAAgtatttttctcttttacacCAGTGTGACCATGGTTGTTTACATAGAAACACGCAGACATTTGCAGCAGTGGGGAACCCGACACTTTACTGTTGAACATATGTAAATGCGCTCTTTTGATTCTGTCCTGTTTTTAATAAGCTGCATTAACTGTGTTCTTCTGATTCCCTCCTAATTAATAAACTGCACAACTTGACCTGAAGTGTATCTGCTAAGGTACTTTATGATCAGGTTTCAACATAATAAGAAGGTTTCAGTATTCCGTTAACTAAGATTTGATTCCTTCTGTCCATGTCTAACCATGGAGAGTTGGAGATGAAATGTGGATAACCTAGAATggctagttttatttttattttttattttttttatatatgattTGGCTAAACTCCGAAAGTCACCTgatgatttgtttttcaaagcAGAAGGTGTCATTGCCTTGACAAATACTACAGCTTCCAGTCAGcctgaagctttttttttgtcacaaataAGAGGGAATGGCTATTACTTCATGGATGTAGGTTATAATTCAGGGCATTTTCCAGTTTAGATCTTAAGCATCACTTTTTAACATGATCACAGACATAGTAATAACTGCAAGGCAGTCTCTTTAACTCCGAAACACGTGTGTGACACGTGTCATGTTGAGCTCCAGCTTCACAAAGTATGTACAGTTAGTTAATTTCATAGCAAATGGAACAGCATGGTCAGTTACA
>XM_039818281.1
TTTAAGACCTGACATTTTACTGGACATTGTAGTACAAATGTGTCGAAATACTCTCTAACATCCGAGTAGGGACGGCGCTTTTATTCTGAAGAAACCAGAGCGGAAgtgttgctgctgctgaggaAGCAAAGAGTAGAATGTGTACGAGATCTCCTGAACTGAATACAGACAAGATGGAAAACATCTCCATTGACAGTTTAATCCTGAAGCTCCACGATGTGAACGCGGTGAAATTTGGAGAATACAAGCTGAAGAGCGGCATGCTGACACCCATTTATATCGACCTGAGGGTTCTCGTGTCCTACCCCGCGCTCATGAACCAGGTGTCAAGTCTCATTTACCAGCGAGTGCAAGAAGAGGGACTGCAGTTTGACTCAGTGTGTGGGGTTCCATACACAGCCCTGCCTTTGGCCACAATCATCTGTTCTAGGCATGAATTGCCCATGCTCATCAGGCGAAAGGAGGCCAAGGACTATGGAACCAAGCGTCTGGTGGAGGGCTCGTTTCAGGAGGGGGACATATGCCTGATCATCGAGGACACCGTGACCAGTGGCAGCAGCATCCTGGAGACTGCTGAAGTGCTCAACAAAGGGGGACTAAAgGTGACGGATGCCGTGGTACTAATGGACCGAGAGCAAGGCGGTGTCGATATGTTGGCTTCTCAGGGAATCAAGCTCCATCCCATCATCTCCATGTTCAAGCTGCTCAACGTGCTGCTGGCAGCTGAACGCATCGACGCTCAAACTGCCCAGAATGTCCGCACGTTCATCCAGGACAACAACACGTTCAGGTACAGTCGCACAccaaacttttggcgtgcgtgcatgcgtgcgtgtgtgtctgtttatgtatGCTATCGGTCTTTACAGCTGAAGATGGCAGAGGAGCAGTCGGACTTTGTGATCGGCTTCATCTGTGGCTCTAAGATCACCCAGAGGCCAGAGTTCATCCACATGACCCCCGGGGTGCAGATTCAGGCTGGAGGTGATGGGTTGGGCCAGCAGTACTCCACCCCAGAGGAAGTCCTCTACAACAAAGGCTCTGATGTCATCATCGTCGGTCGGGGTATCCTGGAGGCCCCTGATAGGCTGAAAGCTGTTGAATCATACAGAAAGTCCGGCTGGGAGGCTTACACAAAGAGACTGGGCCAGAGTGGCCAATAGGAGCTCAACAAAAGAGTTGCATCTGCATCATTACGTCTAATTTCAAATTTATCCCGCGACTCTAATAAAGGACCTCTGCGGATTACCTTAAAgtatttttctcttttacacCAGTGTGACCATGGTTGTTTACATAGAAACACGCAGACATTTGCAGCAGTGGGGAACCCGACACTTTACTGTTGAACATATGTAAATGCGCTCTTTTGATTCTGTCCTGTTTTTAATAAGCTGCATTAACTGTGTTCTTCTGATTCCCTCCTAATTAATAAACTGCACAACTTGACCTGAA

Function

symbol description
umps Predicted to enable orotate phosphoribosyltransferase activity and orotidine-5'-phosphate decarboxylase activity. Predicted to be involved in UMP biosynthetic process and pyrimidine nucleobase biosynthetic process. Predicted to act upstream of or within 'de novo' UMP biosynthetic process; 'de novo' pyrimidine nucleobase biosynthetic process; and nucleoside metabolic process. Is expressed in several structures, including alar plate midbrain region; central nervous system; immature eye; mesoderm; and yolk syncytial layer. Human ortholog(s) of this gene implicated in orotic aciduria and purine-pyrimidine metabolic disorder. Orthologous to human UMPS (uridine monophosphate synthetase).

NR:

description
PREDICTED: uridine 5'-monophosphate synthase

GO: NA

KEGG:

id description
K13421 UMPS; uridine monophosphate synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
TU165423 False 712 TUCP 0.52 4 9920711 9924840
TU165424 False 1271 TUCP 0.41 2 9926817 9928891
XM_039818281.1 True 1455 mRNA 0.49 6 9920624 9928374

Neighbor

gene id symbol gene type direction distance location
fn1a LOC103365935 coding upstream 2998 9884821 ~ 9917626 (+)
LOC120569754 LOC102780892 coding upstream 72865 9842142 ~ 9847759 (+)
epb41l5 NA coding upstream 590148 9289444 ~ 9330476 (+)
ptpn4a NA coding upstream 636384 9203215 ~ 9284240 (+)
tmem177 tmem177,LOC102787076 coding upstream 719847 9196817 ~ 9200777 (+)
cryba2b cryba2,LOC106581834,LOC106586156 coding downstream 14621 9943512 ~ 9946701 (+)
fev fev,LOC102784253 coding downstream 20199 9949090 ~ 9954877 (+)
LOC120570306 NA coding downstream 171041 10099932 ~ 10104167 (+)
LOC120569327 LOC103358003,LOC100710305,LOC102781664,LOC101475894 coding downstream 282219 10211110 ~ 10217650 (+)
rabl3 rabl3,LOC102779363 coding downstream 1201166 11130057 ~ 11134144 (+)
G122980 NA non-coding upstream 206986 9693295 ~ 9713638 (+)
G122979 LOC103367214,LOC104965381 non-coding upstream 240870 9675190 ~ 9679754 (+)
G122975 NA non-coding upstream 252865 9641610 ~ 9667759 (+)
G122970 NA non-coding upstream 424414 9488953 ~ 9496210 (+)
G122910 NA non-coding upstream 736470 9183875 ~ 9184154 (+)
G123074 NA non-coding downstream 212456 10141347 ~ 10185084 (+)
G123078 NA non-coding downstream 218110 10147001 ~ 10152280 (+)
LOC120569328 NA non-coding downstream 280392 10209283 ~ 10281869 (+)
LOC120570334 NA non-coding downstream 321285 10250176 ~ 10321796 (+)
G123118 NA non-coding downstream 700654 10629545 ~ 10629939 (+)
G122846 NA other upstream 1123878 8795453 ~ 8796746 (+)
hdac4 LOC103356262 other upstream 1603931 8170700 ~ 8316693 (+)
G122588 NA other upstream 2771585 7146625 ~ 7149039 (+)
ybey ybey other upstream 4708722 5209102 ~ 5211902 (+)
G122226 NA other upstream 4754726 5164233 ~ 5165898 (+)
lrp1bb lrp1b,LOC102779748 other downstream 407100 10335991 ~ 10618696 (+)
LOC120570060 NA other downstream 1323026 11251917 ~ 11260642 (+)
serp2 NA other downstream 2078766 12007657 ~ 12013200 (+)
G123539 sept10,LOC102785043,LOC103375466 other downstream 3120867 13049758 ~ 13279866 (+)
G123633 NA other downstream 3424415 13353306 ~ 13354085 (+)

Expression


Co-expression Network