G123036 (cryba2,LOC106581834,LOC106586156)


Basic Information

Item Value
gene id G123036
gene name cryba2,LOC106581834,LOC106586156
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 9943488 ~ 9946584 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU165472
TCCATCTACTGTTCTGTGACAGCGGTGTGTCCGGGGGTTCAAGTTGAGGAAGGGGTTTCGGGGagagtttttttgtttcagGTTAGGTCAGGCAGGCAGAATGAAGGCTTAGTGCTGGATCCTACGAATGGACTGCACCTGGTTGGTGTGAGCCTGGGTGCTGTACTCGTTGTAGTGTCTGTACTCGCCTtggtgtctgtctctctccaggaTGTACTGGTAGCCACGGTAACCAGGGAACTGGTAGGCAACccagGCTCCTGAGTTGACTTTGATGGAGGGAACCTCCTTGCTGCACCAGCCCATGGCCTGTAGGGAGGGGTAGTCATCGCACATCTCAAACTTACGGCCCTGGAAGTCCTCACACTCGTACAGGGTCACCTTGCTGTCACTGTGGTTAGCGCACTTGATGGGTCTGAAGGAAAGCATGTGCTCGGttctgtagctgctgtttcCACTCCAGGCCTCGTAGCGAGGGTAGTCTCCCTTCTCCAGGATAAACTGCTGTCCCTGGAACTCTGGGTACTCATAACCCACCCAAGGCCCATTCTCGACCTTGATGGAGCGGATCTTGTTGAAGCCCCTCTCCATGATGTTCTGGCACTCCAGCATGAACTCACAGCGCTTTCCCTGGAAGTTCTCCTCCTCCCAGACTGTGATCTTGAACTGGCCCATCTGCTCCATCTGTTGAGTGTTCATGGCTGCTGTTTCTCCCTTAGGGGTTACTAGACGGTACTGAGGTGGGACAGATCCAGTGTAATCAATGTCGGGGGAGAGACCCTCGCCTGTGTTTTTATAGGGCCAGGCCCCCTGGACCTACGCCACTC

Function

symbol description
cryba2 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Implicated in cataract 42.

NR:

description
beta-crystallin A2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU165472 True 827 lncRNA 0.55 5 9943488 9946584

Neighbor

gene id symbol gene type direction distance location
LOC120569366 LOC104944296 coding downstream 101918 9837041 ~ 9841570 (-)
pard3bb NA coding downstream 170105 9524741 ~ 9773383 (-)
LOC120569925 LOC103368088,LOC100695821 coding downstream 468649 9376529 ~ 9474839 (-)
mrasa mras coding downstream 767940 9146592 ~ 9175548 (-)
pth2ra pth2r coding downstream 821161 9033912 ~ 9122327 (-)
cdk5r2b cdk5r2 coding upstream 21640 9968224 ~ 9971233 (-)
wnt10a wnt10a coding upstream 70229 10016813 ~ 10043389 (-)
wnt6b wnt6 coding upstream 111749 10058333 ~ 10084220 (-)
cfap65 NA coding upstream 158066 10104650 ~ 10118761 (-)
LOC120570308 LOC104919611,LOC104963617 coding upstream 172548 10119132 ~ 10122616 (-)
G123029 LOC103365935,LOC103392484 non-coding downstream 32491 9910460 ~ 9910997 (-)
G122990 NA non-coding downstream 111298 9829431 ~ 9832190 (-)
G122986 NA non-coding downstream 119302 9823917 ~ 9824186 (-)
G122985 NA non-coding downstream 119894 9823184 ~ 9823594 (-)
G122983 NA non-coding downstream 301712 9633504 ~ 9641776 (-)
G123096 LOC103358003,LOC101475894,LOC100710305,LOC104963614,LOC102781664,LOC101175694 non-coding upstream 267471 10214055 ~ 10217650 (-)
G123107 NA non-coding upstream 534931 10481515 ~ 10488786 (-)
G123127 NA non-coding upstream 719673 10666257 ~ 10666555 (-)
G123128 NA non-coding upstream 720646 10667230 ~ 10668174 (-)
G123130 NA non-coding upstream 721763 10668347 ~ 10668634 (-)
G122878 NA other downstream 943365 8999462 ~ 9000123 (-)
ccnt2a ccnt2,ccnt2a,LOC104923135,LOC102200362 other downstream 1140384 8793621 ~ 8803104 (-)
traf3ip1 traf3ip1 other downstream 1495058 8399585 ~ 8448430 (-)
tmeff2a tmeff2 other downstream 2625856 7181931 ~ 7317632 (-)
pcbp3 pcbp3,LOC100710924,LOC107660579,LOC103138153 other downstream 3072276 6782446 ~ 6871212 (-)
stxbp5l stxbp5l other upstream 993469 10940053 ~ 11094619 (-)
thsd7ba NA other upstream 1334026 11280610 ~ 11467939 (-)
LOC120570668 LOC103354235,LOC105936145,LOC100692075,LOC108240393,LOC104918665 other upstream 2285836 12232420 ~ 12245005 (-)
G123481 LOC106675207,LOC106674584,LOC106676400,LOC106674915,LOC106675345,LOC106676354,LOC106674636 other upstream 2672769 12619353 ~ 12619815 (-)
ikzf2 ikzf2 other upstream 4229230 14175814 ~ 14201729 (-)

Expression


Co-expression Network